Array 1 82140-82607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000004.1 Actinomyces bowdenii strain DSM 15435 Scaffold4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 82140 37 100.0 34 ..................................... GTAGCCGCCCTTTGTGATGATGATGGAGCTGTCG 82211 37 100.0 37 ..................................... TGAGCTCAAGCTCATCCTTCGTCAGTTGGAGTACCAA 82285 37 100.0 33 ..................................... GTCAACCCCAGGCTGTCGAGAATCTTCTCGATC 82355 37 100.0 35 ..................................... ACCATCGATGATGTCTGAGTAGCATCCCTCACCGA 82427 37 100.0 34 ..................................... CTCTATTCCCCGCCCTCCGTGCGGGCAACCGTTA 82498 37 100.0 36 ..................................... GATCATGACCCATCCTTTCTCTAAGAGCCTGCCCCG 82571 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 35 GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Left flank : TCCCGGCTCAAGCCGCGCAAGTAGTCCATGAGGAAGAACTTTAGTAGCGCGGTGGCACCGCGGTAGCACTGGCGTCCTGAGGCCTTTGCGCGGGGCATGTGGTCTTCTCTGGCAGGCCGGCCCGGCGGGATTCCGGTGGGCCCGACTCGGGGGCTGAATCGCCCGGGCTGTGACGCCGATGAATGAGCCTTTCCCGGGTGATGGCGGGAGGTCCCGGGAGGGGCTCTGGAGGGAGTGCGAGGGCACTAGCGGAGGAGCTTATGGGACTTGAGTCCTGGGTATCGGATGTCTGATGTTGGTGGGGGAGGGGGGCTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCTCTGGAGGGGTGTCGCTGGCGCTGTGGTGCTGACCTGCGCCGATGTGGTACAAAGGGGTCTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCACAGGGGGTGATTCGAGGGGTGG # Right flank : CGCGCAGGCATACAGGGTTTCAACTGCCGTACTCGGGTCAGAAGGCACCCCGCGTGGGTCGGTTCTCTGCCGGGTCGGTCGTTTTCTGCTGGGTGACTTGCATTCTGCCCGTTGAGATCCGCCTATCTGGGCCAGCGGGATGCGGGTGACCCAGCGAGATGCGGGAGACCCCGCGGCATAGCGTGTGCGCCCCTCATAGCCGGAGTGACCGGGAGGGCCTCGACGGGTCTCTAGCAGTGCGCCTCGCATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGGGTCAGGAGGTGCCCCGCGTGGGTCGGTTCTCTGCCGGGTTGGTCGTTTTCTGCTGGGTGACTTGCGTTCTGCCCGTTGAGATCTGCCTATCTGGGTCAGCGGGATGCGGGTGACCCAGCGAGATGCGGGAGACCCCGCGGCATAGCGTGTGCGCCCCTCATAGCCGGAGTGACCGGGAGGGGCGAGAGGCGGGCGCGCGGCGGCGCCTCGGAACTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 29195-29734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000005.1 Actinomyces bowdenii strain DSM 15435 Scaffold5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 29195 36 100.0 35 .................................... CGGGTGGCTGTTTTGATCCCCGCCCCGGTCATGCA 29266 36 100.0 36 .................................... CGCGCAGCGGGCGGGGTTCCGCACCTGGGGGTACGG 29338 36 100.0 36 .................................... GGCCTCCTTGTGCCCGAAGGCGCCGTTCTGGAGGTC 29410 36 97.2 37 ......................A............. GACTATGCTCCGCCGTATCGGCGGGGATTCCGCACTC 29483 36 100.0 34 .................................... CCACCTTTGGGATGACCGTACGCGAGACGCCCAT 29553 36 100.0 38 .................................... TTCACTATCCGCCCCGCTACTGCCCATAGCGCGGTGAT 29627 36 100.0 36 .................................... ACCGCCCACTTTCGAGGGTTCCCTGGATGTCTTCCG 29699 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.7 36 GCTTCAATGAAGTGCAGTTCCCGGAGGAACTGCAAC # Left flank : CACCCTCAGCGGGGCTTCGGAGTGGTCGCTGACCAGTGCGATCTCCGCCGCCGATATCACGGTCCTGGGCCTGGAGGAGGGCAGGGAGTACACGGTGTCCTCCACGTCCGGCGGCTCTGCTACCGCGACCGCCTCCGCCCTGTCCGCCGGGATGGGCGGGCCCATGGCTGGTGGCCAGGCCCCTGGTGGTGCGGGCGGTCCTGGTGGCCGGAGTGGCCAGGAGCCTGGCGGGCAGGCACCTGAGGGGCAGGGCGACCAGGGCTCATCCGCTCAGGGTTGAGGCCCCGGCGCGGGGCCGCTTGCCAGGGCCCGCAACGGGGGCGGGCGACTCCTGGACTGCCCTGCCCATCACGGGGTCGACCCCACCGCGCATCTCCGAGTACTGGGGGTGGGAGCCGCAAGATTCTGCGGCTCCCACCCCCAGTACTGTCATGTGGGCATCGCGGTTCCCGGAGGAACCGCAACCTGAGAGGGGCGGACCTGGGGCAGAGATTCATGCT # Right flank : CAGCACCCTCAGAATAGCCCGGCCTGCCGGGGATCCGAGGGGGTTCTGCGAGCGCTGCGGCCAGCAAGCCGGCCGGCGCCCTCCGCGTCGCTCAAGGCTAGCGCACGATGCCCGCAGTCTCAACGATTCCCGCCCGCGAGCGCTCCGCGGGGATCCCAGAGCACCGGAGCGCTCGCATCAGGCGATGAGCGGCCCCTCCGGTGTGATGGTCCGGGTCAGGCCCACATAGGAGAAGCGCCGCTCGTCGATGGAGGACAGCAGGCCCACATCGCATAGGAGCACGGAATCCTCCTCGGCGTCGATGATCCCGTCCAGTTCGCCGCGCATCCGCAGGAGCTTGGCCGGGGAGGCATCCACGACGAACACCGAGTACTGGATGCGGTCGCCGTAGGTCAGCAGTTTCTTCGCCACCCGGTTCCAGCGCCGGTCCGACGGGACATCGTAGGCCACAAGGACGCGTCTGACGTCGTCACGCATCAGCGCACCGTCACTCCCCGGTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAAGTGCAGTTCCCGGAGGAACTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2901-270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000011.1 Actinomyces bowdenii strain DSM 15435 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2900 29 100.0 32 ............................. TGTGGCGGCACGAAGGCAGCGGGATGCACTCG 2839 29 96.6 32 ............................T TTCGAGGTCAACCGCCGCGTGGTGTTTGTCAA 2778 29 100.0 32 ............................. CCATGCACGGCCGTGCCTATCGAAAATGCGGT 2717 29 96.6 32 ............................G CTGGAGACCGAGGTGCTCGCGCCTCAGGCGAA 2656 29 96.6 32 ............................T CTCACAGAGGCCGTGAACTGGTTCTCCGCCCT 2595 29 96.6 32 ............................G TGGAACGCGGCGGTCAACGACCAGGGCTACGC 2534 29 96.6 32 ............................G TGGAACGCGGCGGTCAACGACCAGGGCTACGC 2473 29 96.6 32 ............................G GGTGCGGGCGATTCCACCCAGGAGGCCGGTGA 2412 29 100.0 32 ............................. GCGGCGGCCGCGTAGGACTTCCCCGACTTCTC 2351 29 96.6 32 ............................A TCCACCAGCCTGCATGATTTCCGAAATCTCTT 2290 29 96.6 32 ............................G GCGCGCGCAATCTCGCCCACCTCCTCCATGAG 2229 29 96.6 32 ............................T CTCCTTCGGGTTGCAGGTCCCACGGCCCGTGT 2168 29 100.0 32 ............................. GGGTCCCGGGTGAAGATCGGGACGTAGCCGGA 2107 29 96.6 33 ............................T CCCTGCCCTGGCGGTATGCGTTGCATATGTAGA 2045 29 100.0 32 ............................. ACCGAGGGCTACGACGGCCTCGCGTCCTTCTC 1984 29 100.0 32 ............................. CTGTTCATGCTGGTGCTGGGTCAGACCACGCA 1923 29 96.6 32 ............................G TTGTTTGTCGTGGACGTGCCGTAGGCGACTCC 1862 29 96.6 32 ............................G ATCGGGACGTAGCCGGCCGAGGATGGGAGCAC 1801 29 100.0 32 ............................. TGGCTCTGCCCAGGGGCCTGAACGAGCTGGCA 1740 29 96.6 32 ............................G TTTGCACGGCCCGGCGTACACGGTGACAGGCG 1679 29 100.0 32 ............................. CAGGCCCAGCCCAGCGTGTGCTCGGGTAGCGA 1618 29 96.6 32 ............................T CGCCCTCAGGGGCCGTGGGAGCGCCCTCAGGG 1557 29 100.0 32 ............................. GACGCGGTCCCCGACGCCTGATCCGCATCCAC 1496 29 96.6 32 ............................G CGCACCGCCACCCGCGACAAGATCTACAACAG 1435 29 100.0 32 ............................. ATCGGCTCCGCCGGCTCCTCCACCGTCTCCGA 1374 29 96.6 32 ............................G TTCGGTGAGGTTGAAGCCCATCTCCGTCAGGG 1313 29 100.0 32 ............................. CTGAAGGACCTCAACAGCGCCTTCCACGAGAC 1252 29 100.0 32 ............................. GTTTCCGCGTTTCCGCCGGCGACCGCGTTGAG 1191 29 96.6 32 ............................A GCCCACAGGGCCCTCAGCGCCGGGGCGATGAT 1130 29 96.6 32 ............................G AAGACTCCGTACTCGGCAGGGACGGCCTTGAC 1069 29 96.6 32 ............................G TCGGAGTAAGACATGGGGGACGTCAGGAGGAA 1008 29 96.6 32 ............................G AGGTCGTTCACCGCGTTGTCGTTGACCTGGGC 947 29 100.0 32 ............................. GCCGAGCAGTACGTCGTCAGCGTGACCCCCTC 886 29 96.6 32 ............................G CATTAGCGCGTTCTGCGACTACCCAGAATGCA 825 29 96.6 32 ............................G TCCTCGCTGCGGGCGTTGGTGAGCATGCCGAG 764 29 100.0 32 ............................. AGTACGGGCACAGGCCTTCATTTCTGGCCTGG 703 29 96.6 32 ............................G GCATCCGCGCCGCCCTCGCCGATGACCTCGGC 642 29 100.0 32 ............................. CTGTCCCGGCTGCGGGACATCGTTGGGGGCAT 581 29 100.0 32 ............................. TCCTGTGCGCTGCGCCCCCGCCAACGGAACCC 520 29 96.6 32 ............................T CCCGCGACCCGTATTTCGTCAACCCAAGGAAG 459 29 96.6 32 ............................G TAGTGGTGTTGGTGCGAGGGTTCCTCAGTAGC 398 29 100.0 32 ............................. AGCATGGGCCAGACCATGCCCGATAGCGAGAT 337 29 86.2 12 .......................TCC..T CCCATGACCTGC Deletion [297] 296 27 93.1 0 ....................--....... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 97.6 32 GTATTCCCCGCCCACGCGGGGATGAGCCC # Left flank : TGCTTACCTGAATAGTTGGCCTTCTCGACCTGCCTGCCCGCTGCGGGCCTGTTGCCAGTGGGGATCGGGGTGCCATCCACGAGCAGGAGGCTGCCCTGGGCCACGGCCTGGGCCAGGCAGATCCCAGTCATGGCCAGCACATGAGTCAGCAGGGGCACCATGCGCCTGCCGACCCTGGAGACAGTGGGCTGAGAAATACCGTACATCTCGGCGGCCAGGGCTTGGGAGATGTTATGACGCGCCAAAACTAAGGTCAGCTCCACCTGCTGCCTGAGCCCCAGGCGGTAGCCCAGCAGGCTCTGGCCCCGCGATTCGAGCACCTGACCGATACGCCGGACAAGCTCATCGACATCCTCATCGCACAGCCCCGTGGTAGACTGATAACGCATCGGCCGTCTCCCCATGAGAATCGAGTGTGGTAACCCAATTCTCTCCCGAGACGGCCGATGCACCCACTAACGACACGAACAAACCCCCATGAATAACACCCTCAGGCAGTG # Right flank : CAAGGTCTGCCGCGACATGGGCGCCGGTGCGGTACACTTGAGTCAGAAGAGGGGGAATCTCGTGCAAGCTCTGAGATAACGGGCCGTCGGAACGCGCGAGCCTACCCCGCTTCTTCACGCCCCAGCAGTGTTCCCCCACCCACGGGTGCGTCTCGTAGTGTGGTGGCAATTCCTGCGGGCCTGGCCGGCGAGGGTGGCTGGGGTGGGCATCGTGGGAGCCCAGCTGTTCGACCAAGAATCACTAGGAGTGTCCCACGATGCCCAAGAACC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCCCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13021-3841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000011.1 Actinomyces bowdenii strain DSM 15435 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 13020 29 96.6 32 ............................C CCCAGGAGCTCGTAGGTCACTTCGCTGGTCGG 12959 29 96.6 32 ............................C ACGACGTCCGCGGTGAACGTGCCGGTCACCGA 12898 29 96.6 32 ............................C CTATCCGAAAGGAGTTGATCATGAAGATGATC 12837 29 96.6 32 ............................T GTGAGCAGGGTAGGCGTAGCCCCATGTCTTGA 12776 29 100.0 32 ............................. CAATCCCTCAACTACTCCGCGGGCAGGCCGGC 12715 29 100.0 32 ............................. AGCCCCGGAGCATCGTGCTCCGGGGCTCTTCT 12654 29 100.0 32 ............................. TTCTCGTCATTCGTCGTGCCCCAGACGCTGAA 12593 29 100.0 32 ............................. CCTGCCCGCTCCAGGCGCGAGTGCACGTGACG 12532 29 100.0 32 ............................. GACATCGTGGTCACGAAGGTGGCTGCCTGACC 12471 29 100.0 32 ............................. AGGCCGGAGCCCAGGAAGCGGCCCTGCTTGTC 12410 29 100.0 32 ............................. TTCTCGGTCAGGCGCCCGCCGAAAGTCTCAAC 12349 29 96.6 32 ............................T CCGGGGGAATCTGGGGTTCGAGAACAACTGGT 12288 29 100.0 32 ............................. ATGAGTTCTGGCGCGCTAACATCCTCAGCGTC 12227 29 96.6 32 ............................T GCGGACAGATCATTCTTCGCGGAGACTGGGTA 12166 29 100.0 32 ............................. AGCCGAAGGCCGATGAGCCGAAGGCCGATGAT 12105 29 100.0 32 ............................. GCCGAGCCCGTTGTCGGCCCGGCCCGCGACTA 12044 29 100.0 32 ............................. AGCCCCGGCCGATTCGTGCGCATTCTTGTGAG 11983 29 100.0 32 ............................. GCCTTGTGGTTGTCGCCGTCGGACATGTCCCA 11922 29 100.0 32 ............................. CTCGAGGACCAGAGCGTCGTCGATTGCTTCTA 11861 29 96.6 32 ............................T GGCCATAACGCGCGTCACAGCGCCGGTGAAGG 11800 29 96.6 32 ............................C TGCCCGCATGGCCTTCCCGGCCGCCCCGGAGG 11739 29 96.6 32 ............................C ATGCGGCGCCCGACCATAACCGGGTCGGGCTT 11678 29 96.6 32 ............................C ATCGCGCTCGTCGCGCTGAAGACGAAGCCCAC 11617 29 100.0 32 ............................. TTCAAGGATGGGCTTGCCGATATCGACGCCGC 11556 29 96.6 34 ............................A GACTATGCTCCAGAAGCTCCAGAACCCAAGCAAG 11493 29 96.6 32 ............................T GCTCCGCTGACGCGGGAGGCGGCCCCCGAGGT 11432 29 96.6 32 ............................C GCGCAGAAGTTGGAGGATCAGTCGGTGGTCGA 11371 29 100.0 32 ............................. CCGGACCCGTCGGGCGCCGAGGACGCACCGCT 11310 29 96.6 32 ............................T CCACCTCGGAGCCATGGCCAGCGCCAGGGGCA 11249 29 96.6 32 ............................C TCGATGTCCGCGCGGTTCTGGCGGTTGGTGGG 11188 29 96.6 32 ............................C AGCTTCCCCGTGTTGCAGTACAGCTCGACCTT 11127 29 100.0 32 ............................. CCGACAGCGGCCAGCGATAGCCCTTGTATGGC 11066 29 100.0 32 ............................. ACAGCGATGGTGGCCTCGCCCTTCACGCCGTC 11005 29 96.6 32 ............................C GCCGAGGAGGGGCTGGAGCGGATCAGGGCCCT 10944 29 96.6 32 ............................A CCACGAGACGGGCTGCCTCGGACGCGGCCGGG 10883 29 100.0 32 ............................. ACTCATATGCCCTAGTATAGGGCTCGGCCCCC 10822 29 96.6 32 ............................C TTGCGATCCTCTGCGATCACCTCGGGCTGTCC 10761 29 96.6 32 ............................C GCCCTTGTTGAGCTCGGCGGCAGTGGGCTTCC 10700 29 100.0 32 ............................. GGGCGGCTACCTGGACAGCCTCGGTGTTCACT 10639 29 96.6 32 ............................C GCCTCAACGTACGGCAGAACCCACTCGATCGC 10578 29 100.0 32 ............................. CAGATTGGTGCAATTCCCGAACTGGCGCTTAC 10517 29 96.6 32 ............................C GCTTTGGGGCGCCCCCTCATTCGAAGGGCGCC 10456 29 96.6 32 ............................T ATGGGTTGCGGGATTTGATCGGCTCCATCACC 10395 29 100.0 32 ............................. TACCTTCTCAGCATCGAGGGACTGTGCTCCAT 10334 29 100.0 32 ............................. CCCGACCTCGACAAACTCGCAAGAGCCATTAG 10273 29 100.0 32 ............................. GCCAGGCCAGCAGCAGCATAGCCAGTAGCAGC 10212 29 100.0 32 ............................. GACTCCGCCGGCCCCTCGCTCATTCGCCGCTT 10151 29 96.6 32 ............................C CATCTTCAGCGCCGCCTCGGCCTTGGCCCCCG 10090 29 100.0 32 ............................. ATCGTCTCTAACGAGACCCGCCTTACCATCGA 10029 29 96.6 32 ............................C GGTCTCGGCGCCACCGGAGCGCCCTACGGCGC 9968 29 96.6 32 ............................C CCCGACACCTGGGACCCACCGGATGTGGACAG 9907 29 100.0 32 ............................. CCCACCGGGCAGGTCTCATGGCCGTTCATCTT 9846 29 96.6 32 ............................C AGGCCGTCCTCGTTCAGCAGGCCGATCTCCTT 9785 29 96.6 32 ............................C GCGGTTAAGATCATCTCGAATGAGACCCGTCT 9724 29 100.0 32 ............................. TAGGTCTCGCAGTCAAGGAACAGCACTCCCCG 9663 29 100.0 33 ............................. GCCATCGCCGGCGAGTGGATCGCTAGCCAGACA 9601 29 96.6 32 ............................C CACAAGCCGACAGCCGCGGAAACTCGCCGAAA 9540 29 100.0 32 ............................. GCCCTGCTGGACATTCAGGAGAAGCGCCAGGA 9479 29 96.6 32 ............................C ATCTGCCTGGAGGTCGGGTCGGCCGTAGAGGG 9418 29 100.0 32 ............................. GCTGAGCCCACCGTCGGCCCGGCCCGCGACTA 9357 29 100.0 32 ............................. CACCGGCGCTGGGCAGCCTCCCAGTCCCCCGG 9296 29 100.0 32 ............................. GCCCCAGCAACAGTGTCAGCAGACCGGCGCAC 9235 29 100.0 32 ............................. GTGCTGGGCGATCTGCGAGGCCGCATTGGCGG 9174 29 100.0 32 ............................. CGCACCGCCCTCATCCAGTTAATTCCTTTAGC 9113 29 96.6 32 ............................T CACCATCGACTACGAGGTAGTCAGTACCGAAT 9052 29 96.6 32 ............................C CTCTGCCTTCAGGGCGGCAACCTCCTCATGGA 8991 29 100.0 32 ............................. CGGCATAGGAATGCGCTTCGCCAGCAGTACAG 8930 29 100.0 32 ............................. AGATGCTGCGCGCCTGGCAGGAGGAGTACGGC 8869 29 100.0 32 ............................. GAGGGGCGAGAATGACTGTTGTCCTGGCATAT 8808 29 100.0 32 ............................. GGCACGCCGCAGTTACCGCACTGGGCGTCCGT 8747 29 96.6 32 ............................C AGGCGGGAGAGGAAGTCCTCGAACAGTTCGGC 8686 29 100.0 32 ............................. TGGGGGATGCTGGGTGCGTAGTTATCGGTCCC 8625 29 96.6 32 ............................C GCCTCGGACTGCTTCAGGGCGTTGAACAGCAC 8564 29 100.0 32 ............................. GACACGCGCGACAAGATGGAGGACTTGCGCAA 8503 29 100.0 32 ............................. GCCGTGTCCCTGGTGGGGCCCTGGGCCTCCTG 8442 29 96.6 32 ............................A CGGGGGATTCCGGGCCTTCGCGGAAGAGAATT 8381 29 100.0 32 ............................. GCCCCAGCGCTGAGCAGCGCGCAGCCCCATGA 8320 29 96.6 32 ............................C GACGAGGTGCACATCACTATCTACGCCGGCTA 8259 29 96.6 32 ............................C CCCACCACCACCACCGACCAGGAGGACACCAT 8198 29 96.6 32 ............................T ACGTACACCATATTCTATAGCGGGGTTGGAGA 8137 29 96.6 32 ............................C TCCCGGTGGAGCAGGTCCAGCCGCTCCAGGGC 8076 29 96.6 32 ............................C GCGGCCAACGCGAAGGGCAAGATCACAGACTT 8015 29 96.6 32 ............................C TCGATGTCCACGCGACTCGAGCGGTTGGACGG 7954 29 96.6 32 ............................C TTGAACTGCGTCATCGCGGACGCGGCTGTCTC 7893 29 100.0 32 ............................. TTGGCGCGCGCCTTCTGGGAGGACCATGCGGT 7832 29 100.0 32 ............................. GAAGTGACCTTGCGGATGGAGGGCTGAAGCTT 7771 29 96.6 32 ............................C GCGATCAACCCGGTCCTGGGGTGGGTGAACGA 7710 29 96.6 32 ............................C TCATCAGGTCATCCGCCCACACCTACCGGGAG 7649 29 100.0 32 ............................. GGGCCCTCGACGAGCCCGGTGACCCACTGGCA 7588 29 96.6 32 ............................C CGCGCTCTCCATGGCGGAGGGTGTGGGCGAGG 7527 29 96.6 32 ............................C GCCCTTCAGGGAGGGGACCAGTTGCACGTAGG 7466 29 100.0 32 ............................. TCGCCGAGGAGCGCCTGCCCCTTCTCGATCTT 7405 29 100.0 32 ............................. GGGATTCGCCCCTTCTCGTCGGCCAGGGACTC 7344 29 96.6 32 ............................C GACGGCAGCATCGGCGACCCCCTCTCAGGCCC 7283 29 96.6 32 ............................C TTCGCCCCCACGCTCTGGGCGACCGCGCCCAG 7222 29 100.0 32 ............................. TCCACTGACTGAGCGGCCGAAAGCATGTTCTG 7161 29 100.0 32 ............................. ACTGCTGCGGATTCTCGCGACGCCACCTCAGG 7100 29 96.6 32 ............................C ACCGAGGAAGCGTATCGAAGTTGCGGTATCTG 7039 29 100.0 32 ............................. GTCTCATCCTCCCGCGTGTGCGACGGGTCGGC 6978 29 96.6 32 ............................C GGGCGCCGGGGCAAGCGCGGCCTCAGCCTGGC 6917 29 96.6 32 ............................C TACCTGGCCATCGAGGGTAAGCGCCCCACGCT 6856 29 96.6 32 ............................C AGGAGGAGACACCAGCGCCGCCGCGCTCGTGG 6795 29 96.6 32 ............................C GAGCGCGCCATGACCACTGACGAACTTGCGAT 6734 29 96.6 32 ............................C AGGATAGGCCAATTGGGAACACTCTGTGCCCA 6673 29 100.0 32 ............................. CGCGCCCTGCGGGCCGAGCGCACCATCACCAT 6612 29 96.6 33 ............................A CTTGGACATCACCACCGAGGCGGGCCGCGAGAA 6550 29 100.0 31 ............................. GTCACGCTCAGGGCCGACACGACGGCCTTCA 6490 29 100.0 32 ............................. GGGCAGAGACCTGGACCGCCTCAGTGTTGACT 6429 29 96.6 32 ............................C CCACCCGCTGAGTCCTTGGCCTTCTCTCCAGC 6368 29 100.0 32 ............................. AATGGCTCCAACTTGGACATCACCACCGAGGC 6307 29 100.0 32 ............................. TTGATCCATGGCGGCCTTCGCCGCCTTGGAGG 6246 29 96.6 32 ............................C ACACCCCAGTCCCCTGCAGTTGACGCCGGCGA 6185 29 96.6 32 ............................T CGAAGCGTGGAGCCGAACCCCGGCGGCCTCCA 6124 29 100.0 32 ............................. GCTCCGGGAGGCCGCCTGAGCGAGATCCAGCG 6063 29 100.0 32 ............................. GTAGGGCCGGAGCGCTCTGGGAGTCAACCCCG 6002 29 96.6 32 ............................C TGGCCCTGCCCCGGGGCCTGAACGACCTGGCG 5941 29 96.6 32 ............................C GCTACCTTCGACCGGGTCATGCTGAGCCTGTA 5880 29 100.0 32 ............................. CCCTTGGCCCGCCAGGCATCGGCCAGCCAGGT 5819 29 96.6 32 ............................C GGCCTCCTGAGTCACCTTGCGCCGGCCCCGAC 5758 29 100.0 32 ............................. TTGCTGGTCGCGGACGTACCGTAAGCGACGCC 5697 29 96.6 32 ............................T GCGGCGACCCCATCCATGAGGGGGACCTACTA 5636 29 100.0 32 ............................. CCACCATAGACGGCGCCCTAGCGGCCGAACTG 5575 29 100.0 32 ............................. TTCAGCGGCTTGCCGCCGCGCTGGGCGTACCG 5514 29 96.6 32 ............................C CGGGATCTGGATGAGGGGCAGGATCGATTGGG 5453 29 100.0 32 ............................. GCCGCTTTCTCCGAGGCCGCCAAGTCCCTCCG 5392 29 96.6 32 ............................C TCGGTGCCCGTCGGGTCCCCGGTGCCCGGGGA 5331 29 96.6 32 ............................A ACCCCCTTGCCCCAGTACTACCGACTCCTCAC 5270 29 96.6 32 ............................C GCGGGCGCACCCCTATGCGGGTACCGAGGCGG 5209 29 96.6 32 ............................C CTGATGGGCTCCTTGGCGCTCATGAGCACGGT 5148 29 96.6 32 ............................T GACGCGGTAGTGGTAGGGATTTGTGTCAGTAG 5087 29 96.6 32 ............................A ACGCTCACCTCAGGCTCTCCAGCGGCCAAAAT 5026 29 100.0 32 ............................. GCCCTCCGGGAGGCCGGATATGACGTGCGCAA 4965 29 96.6 32 ............................C GCGCCATGACCACCGACGAACTCGCCACGCTG 4904 29 96.6 32 ............................T CCTGTTCGATACACCTATGCGAGGTGATGCTA 4843 29 100.0 32 ............................. GCCCAATTCATCTCACACACGCTGACCAAATG 4782 29 96.6 32 ............................C CCATGTCAAAGGCGATGTGGTCCATGGTCAGT 4721 29 100.0 31 ............................. GGGGGCGCCTGTAGGTGAACGGGCTGAAGTA 4661 29 100.0 32 ............................. TTGTTGAGCAGGTCGGCCCGGGCCACGGCCCC 4600 29 100.0 32 ............................. TCGACCTCATCGTTCTCGGCAAAGGGCGGAGC 4539 29 96.6 32 ............................C GACGTGCCCGCGTCGGACCCCACCAGACCCGC 4478 29 96.6 32 ............................T TCCGGGGTATCGACGCCGTGGTGAACGCCGTC 4417 29 100.0 32 ............................. AAGGCCATCGCCACGGTCATCGAGTCCATCGG 4356 29 96.6 31 ............................T GTTCCCCGCCCGTGAGTCGGCAGATTGACTT 4296 29 96.6 32 ............................A CGGTGACTCATTGCGCACCCACCGTCACGTTG 4235 29 96.6 32 ............................C TTCGCGTCTCTGACGGTCAGAAAAGCGTGCGG 4174 29 100.0 32 ............................. GCCGCCAGGGCGCCCACCGTCTCCTCGATCGA 4113 29 100.0 32 ............................. ACGCGATCACCAACGGACTCTGAGAGGAACAC 4052 29 96.6 32 ............................C CGTCCCCATCTGCTGCGGGCATGACCCAATCG 3991 29 100.0 32 ............................. CCTGTAAAGCGGGTGAGAATATGCGTCTTTCT 3930 29 96.6 32 ............................T CCTCTGGGTTGCCATGCTGGGAATCACGTCGA 3869 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================== ================== 151 29 98.2 32 GTATTCCCCGCCCACGCGGGGATGAGCCG # Left flank : CCGGATGTGGGCGACCTGGTGCTGTGGTCCGAGTTGGGCACGGTGAGCAGTGGCGTGAACTACGCGGAGGCTGAGCCGGAATGATGACCTTGGTGCTCAGCGCCTGCCCGGCGGGGCTGCGGGGCGACCTGACGAAGTGGCTGCTGGAGATCAGCCCCGGCGTGTTCGTCGGGCGGGTGAGCGCACGCGTGCGCGATCAGTTGTGGGAGCGGACTGTGGCGCTGTGCAAGGACGGCCGGGCACTGCTGATCTTCAGCGCCGCCACTGAGCAGGGATTCTCCTACCGGACTCATAACCACGAGTGGGAGCCGGTGGACTGCGATGGCATGCTACTGCTCCGCAGGCCGACCCAGCCGACGAAGCAGGTGCGGCGCACGGGCTGGAGCACTGCCCGCGCCCAGCAGCGCTCCCGGCGGCCCCGGTGGGCAGCGCCACGTCCCGCCACGACCAAGTCGTACCAGAACGAGTCGGATCCCGGGTAGACTCGCAGGTCAGCAAGT # Right flank : TCCACGCCGATGATGGCGTTGGTCAGGGTGTTATTCATGTGGGGGTTTACCAGCCCGTTCTGTAGAGTTCGAGTTTGGTGACCAGAGTGATGATGCTGGGGAGTTCTGCCAGGCGGTGGCGGTAGCCGGTGGATAGGATTTTCCATTTCTTCAATGCGGCGATGGCGTGCTCAATAGCGGCGCGTATGGAGGATACAGCCCTATTGAACTCTTTTTCCCATTCCAGGCGATCTCTTCCTCGAGTCTTCTTAATAGGGGTCAGCGCGCCGTGTGTAGTGTAGGCGGTGTCCGCTATCCAATCGGCGCCGGTAAGGATTTCATCCCAGCCGCACAGGCCAAGTGCGGCACTGTCGTGGCGTGAGCCGGGCACTGGGTCTGAGACGGCCACCAGAGTGGCGTCGGTGGTGGCGGCGACCTGGACGCTCAGGCACTGGGCGTGGTGCTTACCTGAATAGTTGGCCTTCTCGACCTGCCTGCCCGCTGCGGGCCTGTTGCCAGTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCCCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19167-18772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000015.1 Actinomyces bowdenii strain DSM 15435 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 19166 37 100.0 35 ..................................... GGGTACCCCTCGCTCGTGCACATCGATGGCTCGAT 19094 37 100.0 36 ..................................... AGGGCGGTATTGACGCAAGCGTCAATGAGCTCCCGA 19021 37 100.0 34 ..................................... TCTGCCATTCCTGGGACGTCAGCCCCAGGTTGTC 18950 37 97.3 36 ..........G.......................... CATCGATGGGGTTGCTCATTGGCTTGTCCTTCCGTG 18877 37 100.0 33 ..................................... AGCCCGCCAGAGAAGCTCAAGCCGGAGCAAATG 18807 36 70.3 0 ...........T....T.T.CG.G.....-.C.G.GG | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 94.6 35 GTCAGAAGGCACCTCGCGCCATAAGGTGCATTGAGAC # Left flank : TGGGGCTACAGGATCCAGGAGTCCGTCTTCCAGATCAGTATGGAGCACTCCGAGCTGGAGGGTCTCATTGAAGAGATCGAGGAGATCATTGAGAGCACCGACGACGTTGTGCACATCTACCGCTTGTGCCGTCCCTGCCACGATCGCATCCAAGTACTCGGCACACCGCCGAGTCAGGATGATGGAGGGCTGTACCGGGGTCTGTTCTGAGCGTGCGAGGACGGCGGGGCGGGCGCCGGGAAGGCACCCACACATGCAGAACGGGACTTTAGTCCTGGATATCGGATGTCTGATGTTGGTGGGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCGCTGGAGGGGCGTCGCTGGCGCTGTGGCGCTGACCTGCGCGGATGTGGTACAAAGGTGTCTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGCATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGG # Right flank : CGTAGCGGGTGGTGCGGGAGTCGGGAAGGGGCGAGAGTTCCGATCGACTCGGATGCTGCACATCTTCAAGGGCGGGTCGGCAGGAGGATCCGCATGATTCCGCGGATCTTCCGACCGACGGCCCGGCCAGGGCCGCTGAAGATGTGCAACAGGACGCGCGGGCCGCCGAGGGCGGACCTCCAGGTGCTCCGCCTTGTCACGACATTCCCGCAGCGACCGGAGCAGAATGACCTGTCAAACAAGGGGCTGGCACCCAGCTGAGGCGATGACGTGCTGCACCGGGTCCCGTTCCCGGCGCAGCAAGGAACGCATCCGGAATTCCGAACTCCATCGACAGAAATTACGCAAACATTCAGGTTATTTTCAGTAAAATGTCAGGCCTCGCGCTAGGGACGGAATCTCGCGGATTGAGTGGGGTAACAGCGTGAGCGGCTGCCGATGGGGGCCCATGGTCGTAGGTGCGGCACACTTCCGGTCCGGCAAACTGTCACGCGGAACTT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCTCGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 22594-21910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOU010000015.1 Actinomyces bowdenii strain DSM 15435 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 22593 37 100.0 33 ..................................... TGCACGGCAACGTGCAGCTCCTCGAAATTTCCA 22523 37 100.0 36 ..................................... AACGAGGGACGTGATGTCCCCCAGATCAATTGCAAG 22450 37 97.3 35 ................T.................... AAGAATGCCTGCAGCATGTGCCTCACAACGCCCGG 22378 37 100.0 35 ..................................... TCTGACCTCAATCTCGTTTCAATAGCTTTCTGGAG 22306 37 97.3 35 ............................T........ GGCTCCGGCGAAGGTGCCGGTGTAGTCTCCGGAGT 22234 37 100.0 35 ..................................... ATCACCGGGCTCCATGATGATGGCGTTCTCCTTGG 22162 37 97.3 33 ..........G.......................... CACCGACGCGGCGTGGCCGTGGTGAACACCACC 22092 37 94.6 36 .............TC...................... ACCTGCTGAGCCATGATCGGCTCCTTCCTGCCCCCT 22019 37 91.9 36 .............TC.......C.............. GCTTGCGCCTGTGCCTCCACGCGCGTCTTCTCTGCC 21946 37 81.1 0 ..........G...C.......C...C.T......GG | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 96.0 35 GTCAGAAGGCACCCTGCGCCATAAGGTGCATTGAGAC # Left flank : CTGGGTCATCCGCCTTCCGCTCGGTCACCCGCCTTCTGCGGGGTATCCCGTATCCTGCTGGGTCGCTGGCGCTGTTCTGGCCCAGCGGGATGCGCGTCAGCAAGCGGAATGCGGCTGGCCCAGCGAGTCTTGGGCCACCCCGGGCGGACCGGCTTCGCGCACCGGTCGTCCCGGGCAACGACGGCGTTGCGGCGGGGGATGGGCGCCGGATGCGTAGAGGCGCGGGACTGGATGCGCCGGGCGGGGAAGAAGAGCGCGGAGTGGGGCTATGGTCCTGGATATCGGATGTCTGATGTTGGTGGGGGAGGGGGACTTTTCCGCATGGTCTCGTTGGATTCCGGGTGACGGGGGCTCTGGAGGGGTGTCGCTGGCGCTGTGGTGCTGACCTGCGTGGATGTGGTGCAAAGGGGTTTGTGCCGGGGCGGTCTGGAGGGTGCCGACGGGTCGCCTGCGCTGCGCCTCGTATCACTGCTGGTCACAGGGGGTGGTTCGAGGGGTGG # Right flank : GGCCGAATGCCGTCCTCCTTCAGCGTGTCATTGAGATCAGGAACTAGTGCGTCGTGCCCATTGCGGCCTCTTGCGAAGAAGGGAGAGATCGTCATGAAGTCGCCGCCACGTCGGCGTCATTCGCGCCGGGTGCGCTCCGACAGTGCCGAGAGCCTGGCCAAGGAAGCCCTCAGCCCGCAATTGCGGATCTCGGGCCAGTACCTCGGTGTGTCCCTGTCGGAGTTCCAGGCGTCCCGCGTCGTCGACTCCGTTCCGCGCCACTCGGAGCAGGACGAGCTCTTCATGAGCGCTACCTCCATCGAGAGCCTGAAGAGGTCCTGGCGTGTCGTCCTGGCCCGCGATGCCCGTGATGGCGAGCTGCGCCATCAGACCGAGCAGATCGCGGGTCACCTCGATGAGGTGCTGGCCGAGCTCTCCCGATCCCTGCGGGACGGCACCTTCCGGCCGGCGCCCCTGGCCCAGGTGCGCCTGCCCAAGAAGGAGGAGGGCGATTACCGCAC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCTGCGCCATAAGGTGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.80,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //