Array 1 56508-55429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000021.1 Clostridium sp. ATCC 25772 U20725_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56507 30 100.0 36 .............................. TTGTATTTTATGAAGAACCTCTCTAGCTCTTTCCTT 56441 30 100.0 36 .............................. TATATTTCATTAATATTAGCTATTTCATTTTTTTTC 56375 30 100.0 34 .............................. TTTATGATCGAATAATTCCTTACGATGTAAATTT 56311 30 100.0 34 .............................. CAAGATTAGAAATATTAGACCCAGAAGCAGTAAA 56247 30 100.0 35 .............................. TTATATTTTTTCATTGCTCAATAATTCCTATTGCT 56182 30 100.0 36 .............................. TATAACCTTTACTATAATAAATTAAATTTAAACTGC 56116 30 100.0 36 .............................. TGGTAGCAAAATCATAATGGATGAAGGATTATCACC 56050 30 100.0 36 .............................. CCAGGATTTAAAATCAATATACGAAGTTTTTCCTTT 55984 30 100.0 37 .............................. AAATTTAAATTATGAAATAAATGAAAGTGAAAAGAGA 55917 30 96.7 35 ..........................T... TTACAATATATATGAATATAATGATGGTGATTTAA 55852 30 100.0 36 .............................. TTACTTTTTGAGACTGGATTAGTGGTTAATATCATA 55786 30 100.0 35 .............................. TCATCAGCTTTCTCAAAACTTGGCATTCCTAATTG 55721 30 100.0 36 .............................. TAGAAGAATAATGGACGGTAAAGAAGTATTAAACAT 55655 30 100.0 35 .............................. TTGATGTATACTTTTTATAATCCATATTTTACCAT 55590 30 100.0 37 .............................. ATATTTTAGACATTTCACACGCTCCACTTTTAATAAG 55523 30 100.0 35 .............................. GGGACAACAGGTAAAAATTACATAGAAGTAATTTA 55458 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 36 ATTTAAATACATCTTATGTTAAGGTTCAAC # Left flank : TTTACTGTTATAGATGCTATGGAAGAAGCAATTAGCAAAGAAAATGTTAGACTTTGCTATGTTGAAGGTATTCTTAAAAATTGGAAAATTAACGGTAAAAAGATAATGCAAAGGCAATATAAAAATTCATCTTCTAACAACGATACATTTAATAATTTTCATCAAAGGAAATATGATTTTGATAAATTAGAAAAAGAACTTTTAGGTTATGATTTTTGTTAATGCACCAGCCATAAGATTGTAATTCTAAAACTTATCCGTTTATCAATGAGAAGTTTTAAATCTAAATCAAAACTTTTAAACGGACAATGATTAAAGATCTCTATGCCATAACAAGATGGATAGGTTCATTTGTGGCTAGTTATATAATAAAATAAACAAATCACTAGTACTTTTATTAAATATTTGCCATTACATGATTCTAAGAAAATGAACCTTCACTCCATCTGACGTTAAGATTTAATGGTAGATAACTACGCTAGATTCATGAAAGTTACAAA # Right flank : CATTGAAAAATAGCCATTCTTTATTTTTTATTATACATCTTAACCATTGATTTTGCTAGGTTTTATTGTTTTTTTACCAGTGATTTTTATTTTTTAAAGCAAACCAGCAAAACACCTTTTAAACTCAGTAATTTCAAAGCATTACAAGTTTTTAATGAATATTTTACTGGTAAAATTCATTATTTTATTTAAAATAACATTTTATTTGTAAATTCCTCTTCAAAGGTGATTAGACCCTTATCTTCATTATTTTTTATTTTTTCAAACTCTTCTTTAAAGACTACTTTAGCTTTTTCTGTATCTTTATTTATTTTTGCTTCATAGGTAGCTAATGCTCTTGCTTTTGTTATAGCTTTGCTATTTTCTATAAAACTTTTGTTGTTATCATAATATTCTTTTGCTTTTTCTATATTATCTTCTATTACTGCATAATAAAAGAATATATCATGTGTGTAGGTAAACATTGTTCCTGTAAGTGGTGTTATATCATATTCACTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 496-1630 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000022.1 Clostridium sp. ATCC 25772 U20725_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 496 30 100.0 36 .............................. ATTATCTATAAAAAATAAATAGTTGTATTTTAGGTA 562 30 100.0 37 .............................. ATAGCCATTCTTCATTTTCATTATACACCTTAACCAT 629 30 100.0 35 .............................. TTGAATTAGGAGGTAATCATTATGAAAATAGGTGA 694 30 100.0 36 .............................. ACATCTAAAAATGAAATTATTAATATGAGCTATGAT 760 30 100.0 36 .............................. ATCTAAAAAAGTAGAAGATTTAAGAAAAAGGTACGA 826 30 100.0 34 .............................. GAAGATGTTGAGAAAGTAATGAATGATATGCTTG 890 30 100.0 36 .............................. TAAAAAAGTTCTAAGTATTCTACTTCTCGTAGAACA 956 30 100.0 36 .............................. TAATGATGATAGTCTTTTTAACTATAAAGTTGACCC 1022 30 100.0 36 .............................. GCATCATATCTAAAAAGATTATCTCCCCTATCTAAT 1088 30 100.0 35 .............................. ACATTATTATTTTCCATACTTGTTTACCCTCTTTC 1153 30 100.0 36 .............................. TTCATAGACTTTTCCACTATAGGTATGAAGTAACAT 1219 30 100.0 34 .............................. TAATAAAATATGTTAACAATATTGCTCCAATCCT 1283 30 100.0 37 .............................. ATTTAGTGTAGATGAATCAGGTGGAGACATCGGGACA 1350 30 100.0 38 .............................. CAATCTAAAATACAATTGCAAATCCTGCTATACTTAAT 1418 30 100.0 35 .............................. ATTGACCCATCCCATGAACCATATGCTCTAAATGG 1483 30 93.3 37 ...............GG............. CACAAAAACATTTGACATTCATCATAAAAGATGATAT 1550 30 83.3 21 ...A..TG.......G.............C ATTATTACGTTTATTATTAGA Deletion [1601] 1601 30 76.7 0 T......T...............AA..CTG | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 97.4 35 GTTGAACCTTAACATAAGATGTATTTAAAT # Left flank : TATTAGGAGTGGCTTTTTTATTTGTTTTTATAACTAAAAAAGTTATGAAAAACATGAAAAATATGGCTTAGCTTTACTCACATGCTTGGAACCCTATATAATCTCCAACTTAAATTTATACATAAAATTTTTGTTATCAGTTGAGAAAAAAGACTAACAAAAAATTGTGCTTATATTTGTAATTTTTTAAATATATAGATTATATAGTAGTTAGATTGCATAATTAAAATTTGTAAAGAAGGAAAGTTATCCAAAGGGTTAGTCCCATCTAGAAGTTACTTTTTAATAAGTGAGAAAAATAAAAATATAAAATTAATGAATTTTACCAATGAAATATTCACTAAAAACTTATAATGCCTTGAAAATACTAAGTTTAAAAGGTATTTTACTTATTAACTTTAAAAAATAAAAATCACTGGTAAAAAAACAATAAAACCTAGTAAAATCAATAGTTTGGATGTATAATGGAAAATGAAGAATGGCTATTTTTCAATGG # Right flank : GTTTTAAAAATGATGGCTTTTTAGCAGTATTTGTACAAAAAACAGAATAGTATATTAATTTAGTTTTAGAAGAATTATTGTTATAACTAAAAAAGATAGTTTAAATTTTACAAAATTTAAACTATCTTTTTTATATTAAAAATAAAAGCTGAAATTTAAATTAAAATTGTATTAGTAGGTTAGGTGGATATTTTAGCATTTTGGAAATATTAAACATGATAAATATTTACATTAAATCATTTATATGGTAATATATTTATAGGTATAAATCAATTATAACGTTAATTAAAGGGGAAATAAATTTGGGAGAAACAATTATTAAATTTATTGAATTTATTGAAAATAATAAACTTATGCTACTTACAGTAATGTTATTAATTTTTTCTATTTTTAATAGAAAAAAAGATATAACTTTAGTAAAAGAAGATAGAAAAGGATCTTTTCTTTTAGTTATATCTAATAACGAAAACATATAAAAGAGTTTACTTTTATATGTTTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 12777-11437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000022.1 Clostridium sp. ATCC 25772 U20725_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 12776 30 90.0 35 .C..C........C................ TCTAACATTGTTACTATTTTCATTTTGATACCATT 12711 30 100.0 37 .............................. TGAGAGCATTAAGTGCAGACTTAACTGTAAAGTCAAC 12644 30 96.7 36 ..........................T... CGAATCAAAAATAGAGAATAAGCAAACTGGAAAAGC 12578 30 100.0 34 .............................. TGTTTAAGAGGTGGATTTATATGTTAACAAGAAA 12514 30 100.0 38 .............................. TACAACATACTTTCCTTCATCACGTGGAGAAGAAGTTA 12446 30 100.0 36 .............................. CCTTTCTCCTTGTCTTTGTAGTTCTGTTGTTTTTCC 12380 30 100.0 35 .............................. AACAGAAATGAAGAAGTTATTTCTATTCTATCAAA 12315 30 100.0 35 .............................. TATTTTATTAGGTTATAATTTAAAAAGTTTACGAG 12250 30 100.0 36 .............................. AGAGCTTATTCATATTTTAGAAAGCAAAATGATTTT 12184 30 100.0 35 .............................. ATTTAACCCAGTACCAACTTTTACCCCCAAACCTT 12119 30 100.0 35 .............................. CCTTTAGATGCAATGGAGGACTTGAACTTAACATT 12054 30 100.0 34 .............................. ATGTAGTTCCTGAAATAGATGATGGAATTGAATC 11990 30 100.0 35 .............................. AAAATTTATGCATATAAGAACCCTAGCTATTTGTG 11925 30 100.0 34 .............................. AACACAGGATACCGTTCTAAAGGTGGTGATTATG 11861 30 100.0 34 .............................. AACCTCTTTTTCTTCTTCAATAAATTCTTTCATC 11797 30 100.0 37 .............................. TACAATCAACTAATTCTTCAAGTATTATGCTTTTATC 11730 30 100.0 35 .............................. AAATATAAATCCACCAGTAATATTTAGAGCAGATT 11665 30 100.0 36 .............................. TGAGAAGATTGGTAGCATAGAGCATATATATGAAGC 11599 30 100.0 35 .............................. GCAACGCCATCGAGTATTTATGCATATACAACGCA 11534 30 100.0 38 .............................. TGTACATTACCAAGTCCGCAAGCTATTCCTTTATTACC 11466 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.4 36 ATTTAAATACATCTTATGTTAAGGTTCAAC # Left flank : AAATACATAATTTTTATACTCTTTCTTAGGATGAAGTTCCTTTAAACTTTCATCCAATAACATTGCTTTATTTATATTTTTTCCAATTACATATCCACAGTCAGCAAAGTAAATATCTTTATTCAACATAACTGTAACCGTTAACTCTACAAAATTCAACACAACACCTCATTTTTTACTAATTTATGAATATTATACCATAAATGTGATGAATTTTATAATAAAAAAACCACTGATTAAACAGTGATTTAAATTATATTTTCTATTTAATTTTTAAATTTTAATTAGACTTTAATTTTATAAAGATACAATCATCATTTAAATTTGTTTAATATCATTAAAATATTTTTTATATATAATGTAGTATGGCATTTTAACTGTTTTGGATATCCACGTTTTCAAATGAATAAATTTAGAAGTCAACTTGAAAATTTATATATGTATTAAAATTTAATAACCTTTCTTAAATGTTTACAATTACATGGTGATAAGAAAATGAA # Right flank : CATTGAAAAATAGCCATTCTTCATTTTCATTATACACCTTAACCATTGATTTTGCTAGGTTTCATTGTTTTTTTACCAGTGATTTTTATTTTTTAAAGCAAACCAGCAAAACACCTTTTAAACTCAGTAATTTCAAAGTACTGCAAGTTTTTAATGAATATTTTGCTGGTAAAATTCATTTTAATTTCTTATCTTTACAACTAAATAATCAAATCTTCACCAGTGTTATTAAGTTGAATGCCTAATATTTCTTCTTCAAATACATTTTCGTTCATAAGTTTTATTATACAAATAAAATCTTCCTCTTTATTTATAACCCTATTTAAGTCTTTTCTTAAAGCTATTAGCTTTGATGGTGTTATTTCTCCTCTAAATACTGATTTTTGGAAATGAGATAGATATTTCTTGCATACTTTAAAAACTCTTTGTACTCGTTTCTCGTTAACATCATAAAAAACAAATGCATAATTAAAATTAATGTTCTTACCCATTTTACATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 22935-23754 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000022.1 Clostridium sp. ATCC 25772 U20725_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22935 30 100.0 36 .............................. TTAACCATATTTGCTCCAACCGGAAAAGGTATTAAT 23001 30 100.0 35 .............................. GACTATACATTAGGAGTTGAAACTGGTAGCTCTAA 23066 30 100.0 36 .............................. CCAGTAGATACATCTTCAATTATTGTACTACGTGTA 23132 30 100.0 37 .............................. TCTATAGAATGATAAAAAAGCCTTACTGGTTGATTAG 23199 30 100.0 36 .............................. TCATTACAAGGCATAATTTTAAAGGTCACAAACAAA 23265 30 100.0 35 .............................. TATGATATTGCTTTAACACCATCATAATTATTTCT 23330 30 100.0 36 .............................. TCGAATATAGCTGAATAATTTCCATCTGATAATGTT 23396 30 100.0 36 .............................. TAAGTTATTTGCATGTATTTCTCATCTATATATTTT 23462 30 100.0 36 .............................. AAGAATATTCCAGCAAGTGTTATACCTTGAATTAAA 23528 30 100.0 35 .............................. TCAAATTCATACATATAACTAAAATCTGGAGGTTC 23593 30 100.0 36 .............................. TTAATCTCTTTGAGTTTTTGATTCTTAAATAAAACT 23659 30 100.0 36 .............................. AGGTTTAAAGGTTCGGAATATGTTGACAGTATTGAA 23725 30 96.7 0 ...A.......................... | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTGAACCTTAACATAAGATGTATTTAAAT # Left flank : ATATTTCCAAGTACTACTAAGTTATAATATCTCCATAAGTGATATAGCCCAAGGATTAAAAATAGGAAAAGTAACAAAAATAAATTAATTGTAAATGTATTAAATTTTATTTGAAGGATGATTACAAGTAACGTAATGATATTTCAACAATAAAGTTAAACTTATACTATTAATGAACTAATTTATAAATAAAGTGAATTAAAAATTCCAACCTATTCTAACTGATGAAATAAAAGACTTAGAGTAGGTTTTTATTGTGAATGAAATATATTTTACTTATAAAAGAATAGTGGTTTTGAATTGAAAAAGTATAAAAAATAATGAATTTTACCAGCAAAATATTCATTAAAAACTTGTAATGCGTTGAAGATACTAAGTTTAAAAGGTATTTTATTTATTAAGCTTAAAAAATAAAAATCACTGGTAAAAAAACAATAAAACCTAGCAAAATCAATGGTTTAGATGTATAATAAGAAATAAAGAATGGCTATTTTTCAATG # Right flank : TCAAACCACAACTTTATCACAATCTTTACACATTTTAGTTGAACCTTAACATAACTTAAATACATAAACTAATCAAGCAAATTGATAATTTATGTATTTAATTTATTTTAAAAAGGACTCTTATTTTTTAGGATAAGGGTTTTTATTTTAACATTAATTTAAATTTGAGCTTGTTTCCCTATATATATCAAAGATACGTTAAAAGTAACTTAATTTTTTATATGTTTAAATATATTATTCTATGATAATGTAATAGAATAAGGAGCGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAGAGACATTATATGGTTGATATATCTAAAAAATTAGATAGTATATTAAGTTTAATAGATAATCAAGAATATTTTATTATAAATAGACCAAGACAATACGGTAAAACTACTACTTTATATTTATTAAATAGATATTTAAAAACATCTATCGAGTATATTCCTATAAAAATAAGCTTTGAAGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 26828-25945 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000022.1 Clostridium sp. ATCC 25772 U20725_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 26827 29 90.0 34 T..A......................-... ATACATGAAAATTATGGAAATGTAAATACATAAT 26764 30 100.0 36 .............................. TGCATACCTTGTGCTGCATTTATAGCATATTCTTTC 26698 30 100.0 36 .............................. TGAAGCTTATATATTACCTTTAATAGAGAATATATA 26632 30 100.0 36 .............................. TTTACCTTTAACACTCTTTATTGCTCCTGTTCCTTT 26566 30 100.0 35 .............................. CAAAATCAACTCGAACTGCGAAGACATGATTTATC 26501 30 100.0 37 .............................. GTACGATGAAAGATTGTTGGGTGTTCAAAGAATTCTC 26434 30 100.0 35 .............................. GGCTATAGAGTTTAGAAATAGGCAAAGCACAGTCT 26369 30 100.0 35 .............................. AAAAAAATGCGTTGAGCTTGGTTTAAAAGTAGAAG 26304 30 100.0 36 .............................. TTATGAAAGTCTTGAATAAGTATAAAATAAATATAA 26238 30 100.0 35 .............................. TTGGCACTATACGGATTTTGTTAGGATTGGTAGTC 26173 30 100.0 37 .............................. GAGTATCTAAAGATGTAGTTGAAAAATTAACTTTTGA 26106 30 100.0 37 .............................. TTGATAACAAATTAGAATATTATAAGAAGACTTACAA 26039 30 100.0 35 .............................. TTAAATCCAGAAGAAATAGATAATATTTTTTTTAA 25974 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.3 36 ATTTAAATACATCTTATGTTAAGGTTCAAC # Left flank : AATATTCAGCCTTTTTTAAAGCTTCTAATTGATACATTGTCTCTCTTTCTTCTATCAACTTATAATTATTTTCCTTCCCACCAAATTGTGTAATGATGGTTTTCATAGGCATTTCCATTGAACGATACTTTGTATAGGAAAGCAATCGAAATACATCTACAACATTATAATAACGATGACCGTTTTTTCCTTTTTCCACTTCAATTAAATGCTCTTTCTCAAAATAGTGAATAGCACTTGTAGTACATCCAAGAATTTCTGCTAAATCTGTAATACTATATTTCATAATTTACCCCTTTCTGCATAAAGCAACTTTAGGTATTTATCGGTAAAATTTTTATATTTTTTACTACTTTAATTATACATTTAATATCCATCATATATTAAAATCTTTTTAAAATAAAAACCTATCCTAAGTATTAAATATAACACTTTAGGATAGGCATATTCTATTAGTTAATAAAATTTAAATCTATAATTACTTCATAAAATTAATGTAA # Right flank : CATTGAAAAATAGCCATTCTTCATTTTCCATTATACACCTTAACCATTGATTTTGCTAGGTTTTATTGTTTTTTTACCAGTGATTTTTATTTTTTAAAGAAAACCAGCAAAACACCTTTTAAACTCAGTAATTTCAAAGCATTACAAGTTTTTAATGAATATTTCATTGGTAAAATTCATTATTTTTTATACCTTTTTAATTCAAAACCACTATCCTTTTAAAATAAAAATATATTTCATTCACAATAAAAACCCACTCTAAGCCTTTTATTTCATCAGTTAGAATAGTTTTTTTTATATTGGAAATAAATTTTAATGGTTTTATACTTTTTAACAATAAACCTGTATTATTTTTTTACTATTACTTTTTATATCTATATAATCTTCTTCTAATTCTTTTATTGAATTTGCAGATTTTCTTAAATCAAATATTAAAAGGTATCCTTTATCCAGTTTATATTGCTCTAAATATTCTGCTAACTGTATTAACCCCTTTTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 30380-30868 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFRG01000022.1 Clostridium sp. ATCC 25772 U20725_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 30380 30 100.0 37 .............................. TATCATCTTCGGTTAATCTATTTCGAGGCATTATTAA 30447 30 100.0 36 .............................. TACACACTCAGGAATAGTTGTTTCTATATGTAAAAC 30513 30 100.0 36 .............................. TCTTCAATGTAAGAGCCAAGCTCTGCATTTTTTTTG 30579 30 100.0 34 .............................. TTTATTAATTGTAGGGGAAAGTGGGTCAGGTAAG 30643 30 96.7 35 ................A............. AATTTAAGGTTATTGTATTTAAAAAACATATTAAT 30708 30 96.7 34 ................A............. TCTTTATTGTAAAGCATACATTTAGTATCTTTAT 30772 30 100.0 35 .............................. ATTTTTGAGTTAGGAGGGGTAAAAAATGTTTAGTA 30837 30 93.3 0 ................A........G.... | CA [30861] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAGATGTCTTTATGAAAACTAGATATGGATATATGTCCATATCTAGTTTTCATTTTTAAGGATTATTATTATAACTTTTGTTTTTTTATATTTATTATTTAAATAAAATTCTTGTTTGAATAATTTTTAGTATATTAGATATAGCATATGAATTTTTACACATGTTCTAACTATTGAAATAAAAATTCAAAGTAGGTTTTTATTGTGAATGAAATATATTTTACTTATAAAAGAATAGTGGTTTTGAATTGAAAAAGTATAAAAAATAATGAATTTTACCAATAAAATATTCATTAAAAACTTGTAATGCCTTGAAAATACTAAGTTTGAAAGGTATTTTGTTTATTAATTTTAAAAAATAGAAATCACTGGTAAAAAACAATAAAACCTAGTAAAATCAATAGTTTGGATGTATAATAGAAAATAAAGAATGGCTATTTTTCAATG # Right flank : TATATTGAATTTTATTTACTTAGAAATTCTTTTTTATAAAAACTAATATTTTAGGTAAGAATAAACTCAGGATTATGGAATAGTGGATAGTTATAATAAGGAGTGAGTTTATGCCATTAATAACATTTGAAGATATAAAAAATAATAAAGAATTTAAAACTTACATAGAAATAGGTGATAGACACTTAGGTGTAAAAGGATATACAAAACACGATTTTGGGCATGTAATAAAAGTTGCAGAAACTGCAGGTAATATATTAGAGCATTTAGGATTTAGTAAGAGAGAAGTCGAACTTGCAAAGATTGCAGGATATATACATGATATTGGAAATATGGTAAATAGACAAGAGCATGCTCAAACAGGAGCATGTATTTGTTTTAATATTTTAACTAGATTAGGTATGAGTCCAGAAGAAATAGGTATTATAGTATCTTCAGTTGGAAATCATGATGAAGAAGTCGGAATTCCTATAAATCCAGTAGCTGCAGCATTAATATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //