Array 1 1042-3006 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXY01000047.1 Salmonella enterica isolate STY60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1042 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1103 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1164 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1225 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1286 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1347 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1408 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1470 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1531 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1592 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1653 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1714 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1775 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1836 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1897 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1958 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2019 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2080 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2141 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2202 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2263 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2325 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2428 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2489 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2550 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2611 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2672 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2733 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2794 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2855 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2916 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2977 29 96.6 0 A............................ | A [3003] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8451-7141 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXY01000141.1 Salmonella enterica isolate STY60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8450 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8389 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8328 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8267 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8206 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8145 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8084 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8023 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7962 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7901 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7840 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7779 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7718 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7656 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7595 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7534 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7473 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7351 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7290 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7229 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7168 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //