Array 1 289939-291127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBAV01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE101 Infantis-Sal017-I_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289939 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 290001 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 290062 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290123 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290184 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 290245 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 290306 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 290367 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 290428 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 290489 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 290550 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 290612 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 290673 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 290734 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 290795 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 290856 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 290917 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 290978 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 291039 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 291100 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307410-309307 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBAV01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain SPE101 Infantis-Sal017-I_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 307410 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 307471 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 307532 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 307593 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 307655 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 307716 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 307777 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 307838 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 307899 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 307960 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 308021 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 308082 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 308143 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 308204 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 308265 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 308326 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 308387 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 308448 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 308509 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 308570 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 308628 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 308689 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 308750 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 308811 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 308872 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 308933 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 308994 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 309055 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 309156 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 309217 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 309278 29 93.1 0 A...........T................ | A [309304] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //