Array 1 692621-693073 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADIQ01000005.1 Escherichia coli H588 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 692621 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 692682 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 692743 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 692803 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 692864 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 692924 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 692984 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 693044 28 85.7 0 ....................A...C.CT | T,C [693064,693068] ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 702132-703280 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADIQ01000005.1 Escherichia coli H588 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 702132 28 100.0 32 ............................ TTCTCTTACAGAAGGCACCGGGAGGGCACCCC 702192 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 702252 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 702312 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 702372 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 702433 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 702493 28 100.0 32 ............................ GGTTACGCCAACCCTGCACAGTTCACCACCCC 702553 28 100.0 32 ............................ ATCGAGATGGAAGACGAGCACGGCACCAGTTA 702613 28 100.0 32 ............................ GACCTGAATCCCAAACCTACCACCCACAAAAA 702673 28 100.0 32 ............................ GCTAATGTCTGCGGAGTATGAGATCGCGCTCC 702733 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 702793 28 96.4 32 .............T.............. ACGCCCAGCGACTGACACCGATTGTGGTCCCG 702853 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 702913 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 702973 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 703034 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 703094 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 703154 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 703253 27 85.7 0 ...G...A...............-C... | T [703273] ========== ====== ====== ====== ============================ ======================================================================= ================== 19 28 99.1 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //