Array 1 455451-456020 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWP01000019.1 Cronobacter sakazakii strain CE15 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 455451 28 100.0 32 ............................ TGGTGCCGCTAACCGTACCGGCTTGGCCTGTT 455511 28 100.0 33 ............................ TAGCGAGTATCAAATGCTCGCGAATCCGGCTCA 455572 28 100.0 33 ............................ TGCCCCACGCCGCATGTCACACCCAGTCACGTT 455633 28 100.0 32 ............................ TGCAGACGGCACAGAACGCCGACAACGGGTTC 455693 28 100.0 32 ............................ GATGGGCTGGTGGGGTGACACTTACCCCACGA 455753 28 100.0 32 ............................ TGGACTGGTACCGTTATCGCGAACCACCTCTA 455813 28 100.0 32 ............................ CAAGCCAGTTTCTCAGCGTCCAGGCGCGCGTA 455873 28 100.0 32 ............................ ATTAGCCAACACGAATGAGCCGGATTTAACTG 455933 28 100.0 32 ............................ TGGCAGCAAAGCCGCGCTAAGGCTTAACGGGA 455993 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCATTGATTTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACATTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCTCAGCCACCCGCCGGGGTTGGATACGCCGTCTACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTGTTATCGTTATATAAATAACGACGCAATATCATGGGAAAATTATACATAAATTTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACAGTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 464731-465901 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWP01000019.1 Cronobacter sakazakii strain CE15 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 464731 28 100.0 32 ............................ TGATGCTTTGGAGTACCTGGAACAGTTCGCGC 464791 28 100.0 32 ............................ CAAAGGCGCGGTTGGTGTGGCGCAGGTCACTG 464851 28 100.0 32 ............................ TGGTGCGCTGCGTTCGTTGGCGCGATGTTGGA 464911 28 100.0 32 ............................ TCGATAACGCCCGGTAAATACGTATCGACAAG 464971 28 100.0 32 ............................ TGAATGGTTCATGACGGAAGAGGATGAAGAAG 465031 28 100.0 32 ............................ CACGTGATTTCGTTTTCACCCCGGATAACGGC 465091 28 100.0 32 ............................ ACCACCAGCTATCCGCTGTCGCGTTTCACTAA 465151 28 100.0 32 ............................ AGCACTGGAAACGGCAGAACTGCCACTTCGAA 465211 28 100.0 32 ............................ GTCGGCAACGAGCGCGCCCACACTGCGCTTGT 465271 28 100.0 33 ............................ CATTGGTAATCCTTTCGAATATTCATCATCACT 465332 28 100.0 32 ............................ CGGATAAATGGACGCTGGAAAGATGTGCCAGC 465392 28 100.0 32 ............................ TCAGCTTGAAACGGTTTTTGGCGCCGTTATCA 465452 28 100.0 32 ............................ AGGCGGGTCAGCGGGGCAGGCGTTTACCCCGT 465512 28 100.0 32 ............................ CGGTACGCGTACCGCGCCACCGCCGTCTTTTC 465572 28 100.0 32 ............................ AGACTGCCAGCCCCTGAATGCTGCGTTTTCAC 465632 28 100.0 33 ............................ GGGAGTGAACATCGAACAGGAATTTCGAAACAT 465693 28 96.4 32 ...T........................ CATAGCCGAGGCGGCGGATCGTGTCGCATAAC 465753 28 96.4 32 ...T........................ AGGTACGCCGGACGCAGCCCCTCTGTGCCCGT 465813 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 465874 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGCCTGCAGGATTACTGCCAGAGCAGCGCAATATTACCCGTGCCCCAGGTTCAGGGCTGGCGCACCGTGACGCGTGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAAAAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAATACGCCTCGCTAACTTGTTGATTTTTATAATAGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCGTTTATATGATTATAAACAATGGATTAAGCTATTTTTGCTTCA # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193114-194666 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWP01000018.1 Cronobacter sakazakii strain CE15 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193114 29 100.0 32 ............................. TCAAAAAGTCTGGTTATTGGGAGTGTGCTAAC 193175 29 100.0 32 ............................. CTGTTAGGTGCTTTAGCTGTTAATTCAGTGTT 193236 29 100.0 32 ............................. CTTACGTCCAGAGAGTTCGTGATGGGCTACCA 193297 29 100.0 32 ............................. GTTTCTCACCCTTTACCAGTACGGAATAACCA 193358 29 100.0 32 ............................. TCAGCACCGAAGAACAAACGATCTGCCTCTTT 193419 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 193480 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 193541 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 193602 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 193663 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 193724 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 193785 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 193846 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 193907 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 193968 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 194029 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 194090 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 194151 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 194212 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 194273 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 194334 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 194395 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 194456 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 194517 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 194578 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 194639 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 221064-222251 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWP01000018.1 Cronobacter sakazakii strain CE15 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221064 29 100.0 32 ............................. GCTGCGCTTTCTCTGGTGCATCGATATCAACC 221125 29 100.0 32 ............................. GTTTCCGTTTTGGTGCATCTGCAACGAAACTT 221186 29 100.0 32 ............................. TGGGCGGATTCCCACGCGGCAGCGGCGCCCGG 221247 29 100.0 32 ............................. CTTGTTCGAGCCAGAACTCTCGCGGATAAAAC 221308 29 100.0 32 ............................. AACTCGCCTGTGAACGACTCGTCATCCTTATC 221369 29 100.0 32 ............................. ATAAAGACAGCCTGGATCTGAGCACGAATGAT 221430 29 100.0 32 ............................. ATAAAGACAGCCTGGATCTGAGCACGAATGAT 221491 29 100.0 32 ............................. GCGTCTTTCTTACGGTCAGTCTTGATACCGCG 221552 29 100.0 32 ............................. TAGACCTGCGGTAACTCTGCATTAGCCGGAAA 221613 29 100.0 32 ............................. TCAGGCAATATCATTTTTGTAGCAGGCGTATC 221674 29 100.0 32 ............................. TTTCCGCTCTTGTGCTGATTGCATACCTGGCA 221735 29 100.0 32 ............................. TTTGCCGGCCTGATGCTGTCTATTGCTCTCCC 221796 29 100.0 32 ............................. TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 221857 29 100.0 32 ............................. GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 221918 29 100.0 32 ............................. GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 221979 29 96.6 32 .........................A... CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 222040 29 93.1 32 ...........G.............A... CGTGCGCAGATCGCCGAGTGTGTATTGCGCCA 222101 29 93.1 32 ...........G.............A... CGAAGACCAGAGAATAGCCATAATTTGGCGGT 222162 29 93.1 32 ...........G.............A... TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 222223 29 89.7 0 ...........GG............A... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCACGAGCGGGGATAAGCCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAAGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAAGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //