Array 1 1190140-1189106 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RQET01000004.1 Leptospira fletcheri strain SSW15 contig_0001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=====================================	====================================	==================
   1190139	    36	  81.1	    35	...G.TC..AT.C..-.....................	AACGGGAACCGCGACCGTGACTCCCACCGCACTTG 	
   1190068	    37	 100.0	    34	.....................................	ATTTCCGTGATCAAGTAATCGCAGCTTCCGCGAG  	
   1189997	    37	 100.0	    35	.....................................	GAAATGGGGACTTTTAGAAAGATCATTCACTGACA 	
   1189925	    37	 100.0	    34	.....................................	ATGCTCTAGTTGGAGGATACGTTCCAGGTTATTA  	
   1189854	    37	 100.0	    34	.....................................	GACTTAAACGGAATGGAGAGAACGGAAGATTCTA  	
   1189783	    37	 100.0	    34	.....................................	GTAACATTCCAATCGTGCAGTCTTCCTTCATGGG  	
   1189712	    37	 100.0	    34	.....................................	CGTTACGATTGCACCGACCGTATACGCACGTTGA  	
   1189641	    37	 100.0	    36	.....................................	AAAAGAAGAAGTTTATCTTTACCTATTGAAGTTTTA	
   1189568	    37	 100.0	    33	.....................................	TCCACGCTCCTCGCGAAGTTCTCGATAACATGT   	
   1189498	    37	 100.0	    34	.....................................	TTGGGGCAGGGTAGCGGTCAGCAGCCCGTATTAC  	
   1189427	    37	 100.0	    34	.....................................	CAATACCATGAAGAACTTATCGACAATCTTCTCA  	
   1189356	    37	 100.0	    33	.....................................	CCAAATCCGCGAATGCAAAGTCGAACGCTCCTG   	
   1189286	    37	 100.0	    36	.....................................	AAAAGTATCCAGTTGCGTCCGTGTGAGTCCTAAGCA	
   1189213	    37	 100.0	    34	.....................................	AGGAAAGCGCTTGTTTTGCAAGTCATTTGGACTT  	
   1189142	    37	 100.0	     0	.....................................	|                                   	
==========	======	======	======	=====================================	====================================	==================
        15	    37	  98.7	    34	GTTTCAGTTGCTAAGGTGAAACTTCCAGCTATGCTGG	                                    	       

# Left flank :   TTCGGAATTCGAAAGGTATTAAGGACATCGTAAAGAATCTGATTAATTTCTCCGCTAAAGAAGTGAACACGTGGGGGGATCTGATTTCTGAATATGCAAAGATGAAGGAAGATTCGAAGAAGAAATAGAGATTTCTGCGATTATGACTATAATCTTCTTATTTTAAGTTAAACGATCTTAATCGGTATGCCCGCATTACATAATATGTGAAATATTCTGGACATTATCTTACCTTTCGCCGAAAAGTCGGTCGTAGAATTAGGGATTTGAGGCTGTAGAAAGGACTTGCCCAGGAAGATATGGACTTTGGAGATGATGGGATTCCTGTAAGAACTATTTAGAATATAGAAAGCGGAAGGTCCAACCCAAATCTTAGAACTATCCATCGCCTAACCCGAAACCTACAAGTAAAGGCGAAGGATTTGTTCGATATTTGAAGATTTTTGTTATTAAAATTGATATCCCCATTTACCGATATAATATAATAGCTACTTGAGGTG
# Right flank :  AGCGGTCCAAAAGCTCTCAAAATGCCGATTCTTCCGGTAATTTGAGAGCTTATTTTTTTTGTTTTTTCGAAAAGTAAATTGGAGCTAAAAACCGGCAAAATTTTCGAAACCATAAATCCGGTCTCCGCAGCTAAAAGTTATAAATTGGCAAGGCCACAGAATCGAGAACTATATTGATTCTACCAGAATTTTACCTGAGATTTAATAAAATTTATTGCCGAAAAACTGCTTTAGTCGATGTTAAGGATACCTTAAGCACTGAAAACAATCAAATGTGGCGAAAGCCGGCTGGACCTCTACGAATTTTTATTCCTATGTCTCAGTTAGTTTTCTTGTCTTTGGTAAAAATGAGCCGAGCTGGATTTTCCAACCGGCTTTTTTTATATATTTCTGTCGTTGCAATAATTCAAGTATTCGCATTGAACGCATTTGGTTGGCGAGGTGGCTACATACGGCAGGATAGGAGTAGACATTACTTCATTTATGTTTTGATAGGTCTC

# Questionable array : NO	 Score: 3.20
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCAGTTGCTAAGGTGAAACTTCCAGCTATGCTGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:54.05%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-2.60,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,0.64   Confidence: LOW] 

# Array family : NA
//