Array 1 26461-28324 **** Predicted by CRISPRDetect 2.4 *** >NC_018101.1 Corynebacterium ulcerans 0102, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26461 29 100.0 32 ............................. GGTTGCCGTCTGGAGTTCAGTATTTTGAGCTC 26522 29 100.0 32 ............................. TGAAAGAAAACGCAGCTGAGGGATTTTCCAAG 26583 29 100.0 32 ............................. ATGCCACCAGTTCCAATTCGTGAGCGCAGGAT 26644 29 100.0 32 ............................. TCACTGCGCATCACTCCCTCACCAAATAAATC 26705 29 100.0 32 ............................. CTAGCGCGGCGTTGCCGTTATAGAGCTTCTGC 26766 29 100.0 33 ............................. CTCTTTACTGGACGCGGATCAAGATTTTTAAAG 26828 29 100.0 32 ............................. CGCGAGTGTGGTGAGTTTACCTGCTCGCCACC 26889 29 100.0 33 ............................. GAAACCCGCGAGGGAACCCTCGACAGCCTCCGC 26951 29 100.0 32 ............................. CGCCCTTAAGATTGCAAATTGCAATCATTTTC 27012 29 96.6 32 A............................ CATTTTTCCTCCTCTTTCTCTTCGCTCGAATC 27073 29 100.0 32 ............................. TGGGGCATCCTCACGAGCTTTCGCAAGCTCAC 27134 29 100.0 33 ............................. CGCAATAGGTTCCGTTGCGGTATTCCTTGCGGG 27196 29 100.0 32 ............................. TTTTCAAAGCCTCAGGAAACGCCAAAAGCAGC 27257 29 100.0 32 ............................. ACCTTCACGTATAGGGTTTGACGCATTTGCCC 27318 29 100.0 32 ............................. CGCCTGCTAGGTGAAGATGTGATCCTCGCATG 27379 29 100.0 32 ............................. CGTGTGGTGGATTCCAGCCATCGCTCGCAAAT 27440 29 100.0 32 ............................. GGTTCCGAAGTGCTCGATAGCTAGGGCGCGCA 27501 29 100.0 33 ............................. TATTTTTAGAGAAGGGGCAGTAAAATAAAGAAT 27563 29 100.0 32 ............................. TGCCTCTAACGAGGTGGGGGTCAATTGTATGC 27624 29 100.0 32 ............................. CTGGTGAGGGTTTCTTTTTTCCTCTTGCTTAT 27685 29 100.0 32 ............................. GAACCGGGGCCAAGTCCACTACCCGGTGGTGG 27746 29 100.0 32 ............................. CGCCCCGAAGGTTGAGTATCACGATCGGTTTA 27807 29 96.6 32 T............................ GAAACTGCGTCTTTTAAGGAGCATTGGCATCA 27868 29 100.0 32 ............................. CGTGTCTCCGGATCGAGGGAAGAACTTCTGCG 27929 29 100.0 32 ............................. TGTGGGCCTGGTGCGCCCCAAGTCAGAATCTG 27990 29 100.0 32 ............................. ATTTCGCTTCAAAAGACTCAGGATTTAACCGC 28051 29 100.0 32 ............................. AATTGGGTTAGCCATTCGGTGAAGTTCATGCC 28112 29 100.0 33 ............................. CTTGGGGACGCTCAGGCAACGGCGGCCAAGCTG 28174 29 100.0 32 ............................. AGCCCGCCACCAAGAAGAAAATTCAGCAGCGG 28235 29 100.0 32 ............................. GCGTTCAGGTTTCCGCCGGCCTCAGCCAGCTT 28296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : GCTGCAGCGCGAATAACTTTTTCTGCTAAGACTTCATCACGGATACCATACAAATTTTCGAGACTTGCATCCCCAGGATAAGGCAGCTCATCCCAGCGACGTTTTCCAAATCACGATTAATCGAGGTCATGATTTATTGATGGGTAAGGTGGGTGGACTCCTGCAGCTTTCAAAAGCGATTCAAAAGATTCTTGTTCGCTAATTTCACCAAGATAATAAGCGGCAAGGATTTTTTCATCTTCTGGAGTTCTTGGTTGCCCTTCGATTTCTGCGCTTGCTAGATCATTGCGAATCTGTCGTAATTGGTCTTCGCTAATGCGTTCAGTGGGATTCATCATGTCCATCAGTGCTCGTTTCTGGTTGTTCAAATCCGTTTTTGTCAGAGTTCTTGGAAGCCGCCAATATAGCAGGAACTCCTTTGGTGCTTAAGGAAAAAGAAGATGTGAGGAAGGACTGAGACTTTCCCAAATCAAGGATCTTTTGCATGGTAGCCCCAGCAC # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 107319-106697 **** Predicted by CRISPRDetect 2.4 *** >NC_018101.1 Corynebacterium ulcerans 0102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 107318 36 100.0 37 .................................... GGTGTTGAGCTTGCGCGACTACGCAATATTAGCGAGG 107245 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 107174 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 107101 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 107029 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 106954 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 106879 36 100.0 37 .................................... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 106806 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 106732 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2038334-2040805 **** Predicted by CRISPRDetect 2.4 *** >NC_018101.1 Corynebacterium ulcerans 0102, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2038334 29 100.0 32 ............................. AAGCTCCGGGCGCTGCTCAAAATCAATATTTG 2038395 29 100.0 32 ............................. GTAATTAACGAAACCGCATCGGGCGGGCGCGG 2038456 29 100.0 32 ............................. CACCGCCGGGCAGCACTCCCTCAAAGCACAAG 2038517 29 100.0 32 ............................. GGATCGGGCGCGGGCTGCGATTTCGAGCGCGG 2038578 29 100.0 32 ............................. TGCTTGCGGATCCTTCGAGGTCACGCTCTCGT 2038639 29 100.0 32 ............................. CCGCTAGCTTTGGTCGCCGCGCGGCGGCGGTC 2038700 29 100.0 32 ............................. CCCTGGAAAAGGAGAAAAAGTTGAATAAGGGC 2038761 29 100.0 32 ............................. CATCATTGGGGAATCCCCCCGAGCATGGGTGA 2038822 29 100.0 32 ............................. CATCCGGCGTTAGTGACCGCTGCGGTCGCAGC 2038883 29 100.0 32 ............................. CAAGCCCGATCGGGATCCTTCAAAAGCACATC 2038944 29 100.0 32 ............................. CATCGTGGTAACAGACTTTTTCACCTCAAGCG 2039005 29 100.0 32 ............................. TTCTTTCCCTGCCAGCAAGCAGCTGTATTCGA 2039066 29 100.0 32 ............................. TTTTGTCCTCCACTACCCGGATGGTGACGTGG 2039127 29 100.0 33 ............................. ACCAACGTCCGTTTCGATGAATTCTTCCAACGA 2039189 29 100.0 32 ............................. GCCTTAGCGAAGCTGCCCGCCTCCAAGGGTAT 2039250 29 100.0 32 ............................. AAGTTTTCCCTGCTCTGAATCAAGCCGCTTGG 2039311 29 100.0 32 ............................. GCAAATCTTCAAGAACATCTTTGTCCAAGGTC 2039372 29 96.6 32 ............................T GAGCTGGGTTTTGTGGCGTCTCTTTCTCGTCG 2039433 29 100.0 32 ............................. TCCGCATCGTCGTAGTCACCCCTGAGGTAGTC 2039494 29 100.0 32 ............................. GGGCTCGGCTTCGGTTTTTCGCATTCCTGCGA 2039555 29 100.0 32 ............................. GTATCCTCCGTGGTCTTTGGTTTTGTCTTTTT 2039616 29 100.0 32 ............................. CGGAACGGCATGGGTCTACCGGTTTATAGGGG 2039677 29 100.0 32 ............................. GGGTGCTGGTTTAACTGGCCTTGATATTGCGA 2039738 29 100.0 32 ............................. GGGGGAAACACACGCCAGGTGCAGTTACTTGC 2039799 29 100.0 32 ............................. GCTTTTCTTCGAAATCATGCGGCAATTCTGAA 2039860 29 100.0 32 ............................. CGGTCAAAGAACGGTTTAGCTTCCCAGGCTGG 2039921 29 100.0 32 ............................. TGGCAAGGAATCCTCAACCAATTCGACGAAAT 2039982 29 100.0 32 ............................. TAAGGCCACGTCTGAATGGGTGAGCAATGAAT 2040043 29 96.6 32 ............................A CGTGCTTTATCGCCGCCACGCTCGCCGTGTGG 2040104 29 100.0 32 ............................. GCAGAAGAATTTGGAAGAAGCCCGTGAGGTTA 2040165 29 100.0 32 ............................. GGCGAAAAGGTAGCGGAGGAGTCCATGTCAAC 2040226 29 100.0 32 ............................. GGGGGATCAAAAAAATCCCCCACACCCGCCGC 2040287 29 100.0 32 ............................. GGCTAACCCTGCGGCGTTTGTTGTTGCTCGTT 2040348 29 100.0 32 ............................. GCACCATCAGGGAGATGGAAGACACCAGACTC 2040409 29 100.0 32 ............................. AAGGAAGAACAGGCGGAACTTGCAAATACCCT 2040470 29 100.0 33 ............................. AGCCACCCAAGAAAGAAGCAGCGCCCGTCCAGG 2040532 29 100.0 32 ............................. CCCCGGGGCTATCACCCCGTCGATGGGGAAGC 2040593 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2040654 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2040715 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2040776 29 82.8 0 ....................A...AGC.T | A [2040795] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGTTCAACATCAAGGATCTGTACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //