Array 1 123705-124831 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384027.1 Pseudoclavibacter soli DSM 23366 G557DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123705 29 96.6 32 ............................G CAAATCGCAGCAGTGACCACACTCATGCGAAT 123766 29 100.0 32 ............................. TGCCGCGAGCTTGCGTCGCAACTCCCGCACCT 123827 29 100.0 32 ............................. TCGCGCAGCCATTCCGCGATCTCGCCCTCAAC 123888 29 96.6 32 ............................G TGCTACGAGTGGATTGATCCGGCTGCGAGCAG 123949 29 96.6 32 ............................G TCAGACAGAAAGGTGTCGGCGGTTGGTAGGTC 124010 29 96.6 32 ............................G GTCAAGTTGGTGTTCCACTATGAGGGCTTCAA 124071 29 96.6 32 ............................G TTTCACACCCCGCCCGAGCTCGCACGGTTCTT 124132 29 100.0 32 ............................. TCGATCTCAATCTCAGATGTGCACGTGCAATT 124193 29 100.0 32 ............................. CCCGGCAGGGCCGATAGCAGTCAACGCAATCG 124254 29 96.6 32 ............................A CACCCCGTCTACGTGGTCGCTGTGGCAATGGA 124315 29 100.0 32 ............................. GAATCAGTGGCACATACTCTGGTGTGACTTCT 124376 29 100.0 32 ............................. GCCGCAGCCATCCGCTTCTTCATGTCCTCCTC 124437 29 96.6 32 ............................G TGCAGTCCTGAGCGCGGCGAGGTCGTAGAGCC 124498 29 100.0 32 ............................. TGCTGGGCATCTGGAGACGCGACGGACGAGTT 124559 29 100.0 32 ............................. GAGGTCGCCCCGCGTCGTCGGATACAGCAGCA 124620 29 96.6 32 ............................G ATCAACCGGCCCCACGACCGACCACTCATGCC 124681 29 96.6 32 ............................G CAGCGCATCGTGGACTTCTTCGACCCGCCGAG 124742 29 100.0 32 ............................. ACACGGCACGCATCCACGGCACTGTGGTGTGG 124803 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GAGCTCCCCGCGAGAGCGGGGGTGATCCC # Left flank : TCGAGCCACCGGTGAGCGATGGCGATGGTCTCTGCCGCGTGGCCCTCCTCGGGGTATTCGTGTTCATCGGGCAGGGTTTCTGACACCAACGATTGGGGCAGCGCAGTGAACTCTGGGTTGAGATCGCTTTTCCCGTGAACCAGGCTCAGAGATGCGAGAGCGAGCGGTTCATCTGATGGCAGCTGTTCGACCCAGGAATGCAGGCGGGTGAACATCGCGTTGGTGGTGGCTTGTGTGGGTAGGGCGAAGGAGACTCCGTTGAGCAGGTTGCTAGAGCTATGCCTCAACCCCGCTGCCGCGGGGACGTTGTATGACTCAGACCGCCTACGGGGTCACCCCCACGAAAAGCGGGGCGAGTGTGCCCCCACAGTTTACGGATCCTGCTTGGTCGAAACCCTGCGGGGTCTAGTACGCGAAGGCGGCGCACCACGATGCTGGCATGACAAGCCGTTGCTATAACCGAATCCCACGCCGCATCGCGCGGCCGGTGGATGCAGACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTCCCCGCGAGAGCGGGGGTGATCCGTGGCGTGATCGTGGTCTGGTCGCGACGAAGATGAGCTCCCCGCGAGAGCGGGGGTGATCCCAAGACGTGCCTTTCGCCTTATCAACAAGGTCGGAGCTCCCCGCGAGAGCGGAGGTGATCCGGCCATCCAACCGATAAGCGGCGCCTGGCGCCAGGGGCCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCTCCCCGCGAGAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125140-125290 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384027.1 Pseudoclavibacter soli DSM 23366 G557DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125140 29 100.0 32 ............................. TGGCGTGATCGTGGTCTGGTCGCGACGAAGAT 125201 29 96.6 32 ............................C AAGACGTGCCTTTCGCCTTATCAACAAGGTCG 125262 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GAGCTCCCCGCGAGAGCGGGGGTGATCCG # Left flank : GGTGATCCGATCAACCGGCCCCACGACCGACCACTCATGCCGAGCTCCCCGCGAGAGCGGGGGTGATCCGCAGCGCATCGTGGACTTCTTCGACCCGCCGAGGAGCTCCCCGCGAGAGCGGGGGTGATCCCACACGGCACGCATCCACGGCACTGTGGTGTGGGAGCTCCCCGCGAGAGCGGGGGTGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCCATCCAACCGATAAGCGGCGCCTGGCGCCAGGGGCCGTGAATCAGCGGAAGAGGTCGTGCTCGTTGGCCTTGATCCAGTTCTGCTCGTTTTCGCCGAGGGTTGAGCGACCGCTGCCTCGCGTTGTTTCTGTGACCTCGCCCTTCAGTGGGAGGGCAAGGCCGAGCAAGGCTGCCACGACAAGAATTCCCAGTGCGAGAGGGCGGTTGTTGGGGTTGGTGCTCACCCACCTCGAGGTTGCGGTGATCGCAATGCCGCTGTAGATGATGCAGCGGCCTAAGCGCCAGAAGATCGGTCGAGCCGAATGTGTGTATGAGACCATTTTTGTCATATCAGCGCACCTCGTCATAGGGCGATTGCGGCGGGCGGATGGCCGGACGCAGCAGGTTGCGATCCACATTGATGTCGCCCACCGTGCCTGAGAACGGGCGTGGTGTGTAGCGCGCGCTGGCGCGTAGCCTGCGACGTCGGAACCAGGATCGGCGCACTCTGGCGGAGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCTCCCCGCGAGAGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //