Array 1 376869-372934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDT01000003.1 Shewanella algae strain SYT2 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 376868 29 100.0 32 ............................. ATGATCTCTTTGCAACAAATGCTGTATTGTCA 376807 29 100.0 32 ............................. GCAATGGACAACTCCACCTATCTGGCAACAGA 376746 29 100.0 32 ............................. AAAGAATAAAAGGGATGACCAAGACCCCATAA 376685 29 100.0 32 ............................. TTGAAAATAATACTTGCAAAAATGAGGCCAAT 376624 29 100.0 32 ............................. GAAATTGCCGTATTACAACCGTGCCAATGGCG 376563 29 100.0 32 ............................. TCACTGTGACACTGTCTGAGTATAGCGAAATA 376502 29 100.0 32 ............................. GTATTGTGAACAACATCAATGCCGTGACCAAC 376441 29 100.0 32 ............................. GAAAAACACTAGCATCATGGCAATATGCATTA 376380 29 100.0 32 ............................. CGGACAGTACAACACCTCGTGGCGATTCTGCA 376319 29 100.0 32 ............................. GTTTTGAGTGGAGATTTCCTTCTCTTACGTGG 376258 29 100.0 33 ............................. ATAATGGGTTATTGTTATATCACATTAACTGGA 376196 29 100.0 32 ............................. CACAGTGCAGCCAGTTTTCTCTTTAACGTGGT 376135 29 100.0 31 ............................. CCGAAAAACCCTATACGGGCCCAGCGTTGCC 376075 29 100.0 32 ............................. TTTCGCCGTCTGTTTGAACGCATGGGGCAATG 376014 29 100.0 32 ............................. GCCAGCAGCCAATCATACAGACCACCATCCCA 375953 29 100.0 32 ............................. GTCGCCATAATCGGATTAACAGGATCGCCGTA 375892 29 100.0 32 ............................. AAAGCAGCTAAAAAACGAGATAGATCCAACAC 375831 29 100.0 32 ............................. ACCGTGGCCTTGAGATAAAATGCCCATGGACA 375770 29 100.0 32 ............................. TAGAGTCAACGCCTGATTATGTCGAACAGCAA 375709 29 100.0 32 ............................. GCACAAACCTTGCCACTAATGCTGAAATGGGT 375648 29 100.0 32 ............................. ACAACTGTGACAGGTGCCGAAGCAGCAAGGGA 375587 29 100.0 33 ............................. CATCCCGAAGCGTGGCACTTGCTACAGTTGGGC 375525 29 100.0 32 ............................. GCCGCAAAACCCTATACGGGCCCAGCGTTGCC 375464 29 100.0 32 ............................. ATGTTTTTGATGGTGAGATCCTGTATGTCATC 375403 29 100.0 32 ............................. TTTGGAGACCAGTGGAAATCAGAGTCAACGCC 375342 29 100.0 32 ............................. ATGTTTTTGATGGTGAGATCCTGTATGTCATC 375281 29 100.0 32 ............................. GGTTCAAGTAACCCGCTCATCGACACGGGCGC 375220 29 100.0 33 ............................. CCGCACCACTGAAAATCCGCATCTTCCGCGCCG 375158 29 100.0 32 ............................. GCTGTTGGCTCATCGTCAAACGCGGTGAACGC 375097 29 100.0 32 ............................. CCTCCCCAAATAATCATTGAAAAGTTGCGTGA 375036 29 100.0 32 ............................. CTTCTTGGTGGATATGAGGTTAGGCTTGTTAC 374975 29 100.0 32 ............................. GCTGGGAAATGATGATTGCAGGCAATGCCGCC 374914 29 100.0 32 ............................. TCCTGCAGCATAGTCGGCGATGGTTCGCCGGT 374853 29 100.0 32 ............................. AACCTGTTTAACCCACGGGGCTCTGCGCCTGT 374792 29 100.0 32 ............................. CCGCTTGAGTATGTCGAGCGTGACGGCTACAC 374731 29 100.0 32 ............................. CACAGATCCAACACACCTACAGCAGTGTTGCA 374670 29 100.0 32 ............................. CGTTCAAGACTTTATTGACGCACAATCAACGA 374609 29 100.0 32 ............................. GATGCGTTTATTTCGCATCACAGATTTAATAA 374548 29 100.0 32 ............................. CCCCGGCACCCTGCACAGCAATATGATACTGA 374487 29 100.0 32 ............................. CCTTATCAATTCCGCAGTTGCCGCAGGCATGG 374426 29 96.6 32 ............................A ATTTGAAAACAACCTTGTCGGCGGCTGTAACT 374365 29 100.0 32 ............................. TAACTGAACAATTTTCTATTGTTTCTGATATG 374304 29 100.0 32 ............................. CTTGCTGAGTACGACAGCGTTTATACCATTCA 374243 29 100.0 32 ............................. TTGATCTCCATTGGGTTGTCGCGCTCTGTGCC 374182 29 100.0 32 ............................. GACAGTCTTAATTGCCTGGTTCCAGAATGCGA 374121 29 100.0 32 ............................. GACAGTCTTAATTGCCTGGTTCCAGAATGCGA 374060 29 100.0 32 ............................. CTTGTCGTTCTTGCCAACGGTTTGCGATGCAG 373999 29 100.0 32 ............................. GTATCGAGCAGCTTGATTGCGGTATTAGCGTT 373938 29 100.0 32 ............................. ACAATGCGCTTGCCCGGGAAGAACGGCGGGAT 373877 29 100.0 32 ............................. AACGGGTGCAGCGTGGCGAAACCTTGCTAATG 373816 29 100.0 32 ............................. CCGCATCAACACCTACTGCTAGTTTATATACC 373755 29 100.0 32 ............................. GCCTGCAACAATGCCAGGATGTATGCCGAAAT 373694 29 100.0 32 ............................. ATCAATAGCATCCTGGCCTCGATACATTTGTG 373633 29 100.0 32 ............................. GATATACAGCAGGGCATCTTAACTGCTTCTCA 373572 29 100.0 32 ............................. CCAAAGCCATGATTGCAGCCATGATTAACAAA 373511 29 100.0 32 ............................. GCAATCTGGTTGGTGCCTACCGAGACAAGACC 373450 29 100.0 32 ............................. TCTCTGCCCAACTATCGCGGCGGTGGTGGTAA 373389 29 100.0 32 ............................. CATTGACCGAGGCCGGTGTTACCGTCCCTGTG 373328 29 100.0 32 ............................. GCACAGCTGACGCAATGAACGATGTTAGTGAG 373267 29 100.0 32 ............................. TGGAGAGCATTAACAGCATAGAGGCGGTTAAC 373206 29 100.0 32 ............................. CCTGTTTTCTCCCTGGTCAATGATATGGCCGC 373145 29 100.0 32 ............................. CTCGGCAGCAGGCCAGAGCGATATCTGGATTG 373084 29 100.0 32 ............................. GCTATTGATTATCGAATGCAAGTGTCATATCG 373023 29 100.0 32 ............................. AGTAAAACCCGCCATGGTCGCCCAACAAGCAA 372962 29 79.3 0 .......................TCTTTA | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.6 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGAGACACTTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCTGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGTCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAACAATAGTATTTGCCAAGA # Right flank : CTGTACAACCCCAGAAAAAGCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGACTCAAGGCAGCATGTCCACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTCGTAGGGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //