Array 1 49893-47640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033614.1 Leptospira kmetyi strain LS 001/16 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 49892 36 100.0 34 .................................... AAGAAAATCTTTGTCTTTCCGAATTACAGCCTGA 49822 36 100.0 34 .................................... ATATGATAGGTTCATTTAAAGATGGGGCCATTTT 49752 36 100.0 37 .................................... TGTACCCAAAATCGTACACGGGTTTTAGAGTACCGAG 49679 36 100.0 35 .................................... ATTGATTTGGTGAGTTCTCTACCGTTTCGAGTGAT 49608 36 100.0 37 .................................... AAGTGAATAGTAAGAATATTTTCTTCTTACAAGAAGG 49535 36 100.0 38 .................................... ATGATTTACCGGGTAAGAAGTGTATAGGCGCAGTTTAG 49461 36 100.0 38 .................................... ATGATTTACCGGGTAAGAAGTGTATAGGCGCAGTTTAG 49387 36 100.0 34 .................................... GATAACGTAGCTGCACAATCGATAGTCTTATCTG 49317 36 100.0 35 .................................... ATGACGGGCCAAGAAATAGTAGAAATTCTTAGAAC 49246 36 100.0 35 .................................... ATAGGAAGTCCAGTAAGACCTTCGGCAAGTCCTCC 49175 36 100.0 36 .................................... ATTCTTACATTGGCGTCCGTGCGACCTTGTCCGAAT 49103 36 100.0 34 .................................... TGAACGAAATCTGCGAGCAGGATCTTGACGAAGA 49033 36 100.0 36 .................................... GTATTATAGATATTCTTTATGATATAGATTCAGAAG 48961 36 100.0 35 .................................... GAGCGGGTGGTTCTTACCGTTCAAGACACGGGATT 48890 36 100.0 35 .................................... GAGTTTTTTAATGGTGACCAGAACGGCCTTTTGTC 48819 36 100.0 35 .................................... GAGTTTTTTAATGGTGACCAGAACGGCCTTTTGTC 48748 36 100.0 36 .................................... GTTTCAAAAAAACCAGGAATGGCTTTGATTTTTGTT 48676 36 100.0 36 .................................... AAGGAAAAGAATTCGGCTTTCCTTTATTGGCAGAAT 48604 36 100.0 35 .................................... ATGGTATACGTTACGATAAAAAGATTCATGAGACA 48533 36 100.0 35 .................................... TTATATAATTGAAGTGGAATTCCTTCTTTGATAAA 48462 36 100.0 36 .................................... CTTCAAATCCACGGCCACCCCTATACTGATCGATAC 48390 36 100.0 35 .................................... TCCGCGAGAGCGGCATCGAGCTTGGCCGTGAGGGC 48319 36 100.0 38 .................................... AATCGTAACACGACAGTCGCATCGCTGGGCATGAGAGC 48245 36 100.0 35 .................................... TCCGCGAGAGCGGCATCGAGCTTGGCCGTGAGGGC 48174 36 100.0 35 .................................... GAGCGGGTGGTTCTTACCGTTCAAGACACGGGATT 48103 36 97.2 35 ...........................A........ AGATATCTTGATCCCGGAACGATCTTTACAGTCGA 48032 36 88.9 34 .........A...........A..A.T......... CAACCGGGTCCGGCGGGAACTACGTTCAGAGCTT 47962 36 91.7 39 .........G.........T....A........... GGTTGGCACTTTTCGCAGGCTCTGGGGGAGGCCATTCTT 47887 35 80.6 36 .......C.A........T..G.....-.....T.T TTGGTTACAGATAGAGTAGAATTTCACATTTACAAA A [47885] 47815 36 94.4 34 ......G..A.......................... TCGATACAAAAGACTTAAACCTCTTTCAAGCTAT 47745 36 94.4 34 .........A...........A.............. CGTTCAATCCTCTCCGGAGCGTTGGAGCAGGAAA 47675 36 94.4 0 .........A..........A............... | ========== ====== ====== ====== ==================================== ======================================= ================== 32 36 98.2 36 CTGAATTTACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : GGTGGAAATTGGCAAAAGTCACTGAGAACGAAGATGACGTATTTTACTTAACTCTTTGTAGCAAATGCGCTTCGGGAGCACATACTCAAGAGAAAAAATCCGCATGGCCAGAGGCTCCCAAAACATTGAAAATACTGTAATTCAAGTATCTCTTCGGGGCATAGACATAATTCTCTTGAAAAAACAAAACTAAATCAATCTATGTTTAGGTCTGCTACATATCAATTTTCACTTGAATTCAGGAATAGTCTCAATCCAGTAGATTAGCCAATGTTCATTTTCTTCCTTGCAAAAATTCAGATTAAATTTATAATCGAAAATGTATTAGAACATGCTTGAATCTCGAAAACTGATCAGAAATGCTTTTTAGAAACGAAACTACGCCATATAGAAAATCTAAGTATGAAAAATAGTCAAAAAAAATTAGATGCTTGTTCCCCCTTCAAAAATTCCCCCAAATCTCCGATCCCTCCTTATAAAAACCATAAAAGCAAAATGCT # Right flank : AGAAATAAGCGTTTAAAATCTAATTTCCGCAAGACAAAAGAAAATCTGTCCGAAAATATTTTAAATAAAACTTAAATCCAAGTATTATTTAAAAACTCTTTCAGCTTCAAAGGCCTCAAACTGTTGACGTAACCTATACTCTGCACTTTTCCAACTAGCAGGAAGTCGATTGAAATATTCCCGATTAATCCTACGCCAACAATTGTACCAATTAGGTTCTAATTTTTGAATATCACTTTTCATTTCGTTTAGCTGACGAATGACTGTTCTATAAACCTGATACCACGAGGAAACCTTACGTTTTTCAAGAAAACGATTTTTAAGAACAAAAACCTCGAGATCTGAAGATATAATGGAGGGTGATTGAGTAAAAATATCATGTTTATTCAAATACGCAATCTTCTTAAACTCCAAAGAATTCATTTCTTGAACAATTAAATGTTCTCTCGTTTTCCATCGATTTAAAAAGTTATATGCAATTTTATACATAGATGCCTCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATTTACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 52387-53060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033614.1 Leptospira kmetyi strain LS 001/16 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 52387 30 80.0 44 A.AT.........C........T...C... GTTCAAAAGTATGCCCGCTCCAGAGCCTGCGAAAAGTGCCAGCT 52461 30 90.0 40 .................A........C.T. ATTCTGCAATTGCTTTAACGATAAACTCTTGGTAGTTACC 52531 30 90.0 41 .........A....T..A............ GTTCAGGCCTTCCACGAGATCGATCGCGATCGCGTAGTAAA 52602 30 93.3 44 .............CG............... ATTCAGAAAAAAGACAGATCCCTTCCCTTAGGAGTCGCCGAGGT 52676 30 96.7 40 ..........................G... ATTCTGCAATTGCTTTAACGATAAACTCTTGATAGTTACC 52746 30 86.7 41 .........A.T..T..A............ GTTCAGGCCTTCCGCGAGATCGATCGCGATCGCGTAGTAAA 52817 30 86.7 42 .........A...GT..A............ ATTCAGAATCGAAACAAGGAGTGCGATAATATCACCTTCACC 52889 30 100.0 41 .............................. GTTCAGGAAAGAATAGAACGAATCAGAGATGAACGACACTC 52960 30 93.3 40 ..............T...T........... ATTCTGTCAAAAAAGAATACCGCGATTAGTTTTTTCTTTT 53030 30 86.7 0 .....................T..T..CG. | T [53052] ========== ====== ====== ====== ============================== ============================================ ================== 10 30 90.3 41 GTGCTCAACGCCTTACGGCATCAAAGTTAA # Left flank : CTCTGGTCCGTTCTTGCCGATTTTGGCTCTGCCTCTTTTGTGTTCGTATGGAATCCAGTCTCCATCTCGTTTTTGAATACGATCTACTTTACCGGAAATTTCTAATTTTTCACTCGTATAATGAAAGGATTCAATTCTTCCTGATGAATCTTCATTGGGTTCTAATTCTTCGTGTAAGGTTCGTCCAGCATAAACACGATTGTCGGCAACGAGAACTCCTTCCACTTCTTCCAAATAGAAAAGTCTTTCGCAATAAAGTAGGGAATGAATTCCCATTGCTCGTAAGTTTCCGTATGAATCCATATTATTTTTACTTATTATATGATAATTATAATTTTTTAATAATATCGATTTAGAATATTCTAAAAATTAGTTAAAATATTTGTTTTTCTAAATTTAGAATTAAAATTGTGAAATATGTAGTTTGAGTTTTAAACTTTTAGGAGCAGTTTATGCTTAAATGATAAAGTAAAAATTTTTCCTAAGAACTAAGTTTTTGA # Right flank : ATGTATTATTCTTATATCGGTTCTCAATCGTTCTCAAGAAATTATTGATTTTGAAATCGAATTAACCGTCGATGTAAGGTAGTGGATAGCTTTAATACTATTCGGGTTTCTTCGGTGTCCAAACCCATGCGTTAGGCGGAGGTTGGAGTGATTTTTCTTTTGAGATCGCAAAGAGAGGGGAGAGGGTTTCACTATTATCTAATCTATCAATCCCAACGGTAAGTCTTGCCGTTTCCGTTTCAATTTTATCGTCATCAATAACTTTAAAATACCAAAAGGCAGGTATTGAAGATTCTTCAAAAATATCAATAGAATCAAAAAGTAAATTATTATCTCCAGCAAATGGGAGACCGTAACGGATGCAATTCCACTCTCCATTCAAACCAGAAGTTATTTTTTGTTTTAATTCGGGATCATCCGATCGTATCCCAACCAAGACATCGAAATTTGTTAGTATTTCTCTTCTAACGGGACGAATAAAATATTTTGAACCTTTTGTT # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAAAGTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //