Array 1 271226-270483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWT01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N37950 N37950_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 271225 28 96.6 32 -............................ AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 271165 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 271104 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 271043 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 270981 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 270878 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 270817 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 270756 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 270695 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 270634 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 270573 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 270512 29 96.6 0 A............................ | A [270485] ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.1 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-1987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWT01000062.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N37950 N37950_contig_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 68 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 129 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 190 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 251 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 312 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 373 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 434 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 495 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 556 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 617 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 678 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 739 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 800 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 861 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 922 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 983 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1044 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1105 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1166 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1227 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1288 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1349 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1410 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1472 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1533 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1594 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1655 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1716 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1777 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1838 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1899 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1960 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //