Array 1 290824-291439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLES02000005.1 Clostridium sporogenes isolate 2007 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 290824 30 100.0 36 .............................. AGGAGATGAATTAGAATTAGTATTAGAAGGTGATGA 290890 30 100.0 34 .............................. CAATAATTGCAAAGGAAAATAATAAGCTAAAAGG 290954 30 100.0 11 .............................. TCATTTTGTGA Deletion [290995] 290953 30 100.0 71 .............................. TTCATTTTGTGAAAATATATAAATGCATACAGTATCGTTGAACAATAACATGAGATGTATTTAAATCAGAG 291018 30 100.0 35 .............................. TCAGAGTATTATAGGTTATGAATGGGTTACTGAAT 291083 30 100.0 10 .............................. GAAAATGAGC Deletion [291123] 291082 30 100.0 71 .............................. TGAAAATGAGCGTAGAGCAAATGAAGCAGTAGAAAGGTTGAACAATAACATGAGATGTATTTAAATAGAAA 291147 30 100.0 36 .............................. TAGAAACACCTTCTATTACTTTAGGAAAAGTTATAA 291214 30 100.0 38 .............................. TTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCAGT 291280 30 93.3 35 .......CT..................... TTGTATTCATTTATTGTATTCTTAAATACATTCTC 291345 30 90.0 31 ........T......AG............. CCATAAATATCTAATACAGAAAACTTAGAAG 291410 30 86.7 0 A....G......................GC | ========== ====== ====== ====== ============================== ======================================================================= ================== 12 30 97.5 37 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAGTCACTTACTTCTTTGAGGCAACGAGAAGGAGTTTTATAAATTGAATTTTCCCAGGCGTAATAAATTTTAAAACCTATTCTAGCTATTGAAATATAAGGCTTAGAGTAGGCTTTTATTATGTATTTATAAAAAATGGGAATCGGTTGGAAAACTTTTTATAAAACCTTGTAAAATCAATAGTTGTATGATATTCTTAAAAATAAGTAATGGCTATTTTACTATG # Right flank : CAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATGATTGAACAACAACATGAGATGTATTTAAATCCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCGATTGAACAACAACATGAGATGTATTTAAATCCCGTTATGGATATCTATATACGATGTACACGAAATTGAACAACAACATGAGATGTATTTAAATGCTATATTATAATATTTGTCCTTAGCTTCTTTATATTGAACAACAACATGAGATGTATTTAAATTGTTGTTATAAGTACCTAATCTTG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 291693-292310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLES02000005.1 Clostridium sporogenes isolate 2007 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 291693 30 100.0 34 .............................. CCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCG 291757 30 100.0 34 .............................. CCCGTTATGGATATCTATATACGATGTACACGAA 291821 30 100.0 34 .............................. GCTATATTATAATATTTGTCCTTAGCTTCTTTAT 291885 30 100.0 36 .............................. TGTTGTTATAAGTACCTAATCTTGTAACTACTGTTA 291951 30 100.0 36 .............................. ATGTAATATGTTCCTACTCCCAGTACCGTTCTATTA 292017 30 100.0 36 .............................. AATAAAATAGAGGTGCGGAAATCGCTATTTATTTCA 292083 30 86.7 36 G.......GT.....A.............. AATTGTCCAACTTTTCCATCTGGAATTGCTGGATTT 292149 30 86.7 35 G.......GT.....A.............. GAAGCTTCTGTACCGTAAACGATAGAGCCATCTTC 292214 30 86.7 37 G.......GT.....A.............. TTGTTAGCCATAAAATTTTATCTATATAATTAAACAT 292281 30 83.3 0 ........TT.....AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 94.3 35 ATTGAACAACAACATGAGATGTATTTAAAT # Left flank : TACTTTAGGAAAAGTTATAAAGTTGAACAATAACATGAGATGTATTTAAATTTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATACAGAAAACTTAGAAGATACATTGAGCAATAACATGAGATGTATTTAAGCAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATG # Right flank : CAAATTAAAATCCATGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATCGTAGTTTTACTTATTACCATAGTTTTGTTTCTTTGTCAAAAAGCAATGAATCATAAATTAAATTAATAAATCTAGAAGATTTAACGGTGTTAAACTTCCTATGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAACAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //