Array 1 247436-248562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZUI010000004.1 Escherichia coli strain 61 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247436 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 247497 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 247558 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 247619 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 247680 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 247741 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 247802 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 247863 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 247924 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 247985 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 248046 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 248107 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 248168 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 248229 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 248290 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 248351 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 248412 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 248473 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 248534 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 274262-275265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZUI010000004.1 Escherichia coli strain 61 Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274262 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 274323 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 274384 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 274445 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 274506 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 274567 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 274628 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 274689 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 274750 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 274811 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 274872 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 274933 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 274993 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 275054 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 275115 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 275176 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 275237 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //