Array 1 853201-858642 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJT01000001.1 Sulfolobus islandicus M.16.47 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 853201 25 100.0 40 ......................... ATTATCAAACGGATGGGTAAACCTATATAAAACATCGCCT 853266 25 100.0 40 ......................... ATAGTCTATTTATCGTCTTCTTACCCTACAGCGAATTCCA 853331 25 100.0 38 ......................... TTTATACAATGAACATAATTCTTCATCGTTGTATTGTT 853394 25 100.0 37 ......................... ATAATTATGAATAGATCAAATAATAAGAGAAACGATT 853456 25 100.0 38 ......................... AACGTACCGCATGTTCATATCCCTGTAAAGTATTTAGA 853519 25 100.0 41 ......................... CTATCTAGTTCCTCTCTAATATTTTTATTAATCTTAAGATA 853585 25 100.0 39 ......................... TCTTCGGAGTAGTAAGGAACTCTTATTTACCTAAAAAAA 853649 25 100.0 41 ......................... TCACTTATTTTCTTCATTATCTGAGTGTTGACAACGTCTTG 853715 25 100.0 40 ......................... ACAATTCCTACGCCTGGGACTTTTACTTTCTCCTTCTCCT 853780 25 100.0 40 ......................... TTCATGGGCGGGTCACCTCATCCTTTCCCTTTATTTCATT 853845 25 100.0 38 ......................... CCTTGTAACTTTACAGTAAGAAGCTGGATTAGGATTTC 853908 25 100.0 38 ......................... AAGAATTTTGCTAACTGTTCTTTATTCGCAAGAGTTAC 853971 25 100.0 37 ......................... ATAGTCCAGTTTTAGCAGTACTTTATTCTTATGTATT 854033 25 100.0 36 ......................... ACTTTAATTCTAGACCAGTCCGATAGGATATCTCTT 854094 25 100.0 36 ......................... TAGATTAAACGAAGAGGAAAAGAGAATGCTAGAAGA 854155 25 100.0 40 ......................... GTACCAGCAAACGGTTATGGTCTGATTTATGCTTATTTTT 854220 25 100.0 42 ......................... ACATAGATGATCTTATAACCCCTTAACGTCTCTTCCGGCAAC 854287 25 100.0 38 ......................... AACTCTAGTTTTATTGGTTTCTTTTCCCCCTTATTCTC 854350 25 100.0 39 ......................... AAATATTAAAGTTTTGCATTCTTTGTACGCGTCACCAAA 854414 25 100.0 36 ......................... ATATTTTTAAGCTTCTTAGTAAAAGAAGGATATCTT 854475 25 100.0 40 ......................... ATTGTTAAATCAGTTATTCTCGGTCTCATTATAAAATTCA 854540 25 100.0 40 ......................... CACTACTTGTTGTATATGCGTAACTATTAGAATTGATATT 854605 25 100.0 39 ......................... TTCAAATACCCTAATTGTTCTCTCTACCTCATTTAGATC 854669 25 100.0 37 ......................... TTAGTATATCATATGCTTCCTTCATCATGTCAATATC 854731 25 100.0 52 ......................... GGGCAACCACCCTTCACGGGGTGGTCGGGTAGCACCCACCTACCCGTTACCA 854808 25 100.0 42 ......................... ATATTTTCAACTCTATAGCCGTTTTTCATGCATTCTTCTGAT 854875 25 100.0 39 ......................... TCGTATATCTGTACAATCTTCAATTCGTTAAGTAGTTTC 854939 25 100.0 39 ......................... AATTCCTTTATCTTTGCTTCCAGCTCTTCTATCTTCTTT 855003 25 100.0 39 ......................... TTAGCTAGATCAGCTGCTTCAGCTTCTCTCAGCGCTCTC 855067 25 100.0 35 ......................... CCGCCCTACTTGTTTTTATATTAAATGCTATTCCC 855127 25 100.0 38 ......................... TTAAGTCCTTTGATGTGACAGATTATATCAAAATTGAT 855190 25 100.0 38 ......................... TGATAATCTTCAACCTTAATAAATTCGAAATAAATATC 855253 25 100.0 40 ......................... TTAGAACAAATCGTAAATGAGTATTATGATATGAAGTGCC 855318 25 100.0 39 ......................... ACTTTATACTGTAGATATTTACCGGGTAGGACAAAGTAT 855382 25 100.0 40 ......................... CTTGAATAAGCACTTATAGAATTTTTATTAATAGCTTCAG 855447 25 100.0 39 ......................... TCTTGTCTAGTTCATCTAACAATTTTAATAGCGTCTCGA 855511 25 100.0 39 ......................... ATAGTCACGTATATTGGATACCCAAGCTTCTCATAATTA 855575 25 100.0 39 ......................... ATCAGTATTGGGAAGTAGATTGCTTTGCCTTTATTCTCT 855639 25 100.0 36 ......................... CAATAATGTTTATGTCTTTTGTTTGCCTAAATTCTT 855700 25 100.0 38 ......................... TTTTTCTTTCACCTCGATGTAAATATTTACTTCTTCAA 855763 25 100.0 42 ......................... CTAAACCTATCAGAGTTAGCAGAATATAGTAATATTGATATT 855830 25 100.0 37 ......................... AGGATCTCAAGACATATGGTAACAAGTTTGTTTTCTT 855892 25 100.0 41 ......................... ATTTCGTACATCAAGTATTTTGATGACAGTAAGAAATATTG 855958 25 100.0 39 ......................... ACCATATCTTTCCATGCATCAGTTTCTTGACTTCCATAC 856022 25 100.0 36 ......................... AAATCAATATATAGTGCTTCAGATAGTGGCACATAT 856083 25 100.0 41 ......................... ATATATTTCTTTACTAGTTGCTGTGACGATTTAACGCTGCT 856149 25 100.0 39 ......................... CTAGTTATCCCTGCCCTACCGGTAAGTCTAACGAATATA 856213 25 100.0 37 ......................... TCTTGTAGAAACTTTATCCACTTTACTTTTTCTTCGC 856275 25 100.0 39 ......................... ATATTCTTGCAATTGCTTCTAAAGTTCCAATGCTTATTG 856339 25 100.0 41 ......................... AGGTAACTTCTAAGATAGTAAGGTAATGCTAAACGAACCAT 856405 25 100.0 38 ......................... GTTACAAAATTAGAATACTATTTAACAAACTTATCAAA 856468 25 100.0 38 ......................... TTTAATTCTTTAATATAAGTAAGCTGTTCTACATAGAA 856531 25 100.0 38 ......................... GACTACAATTGGCAAAGATCATTCAGTTGGTAGTATAC 856594 25 100.0 36 ......................... TATTCATATCTGCCAATGAGTAATGTATACTTCTAT 856655 25 100.0 40 ......................... GAAAGTTCTTTTTGCAGACGTTCGCCTAATCGAATAATAT 856720 25 100.0 37 ......................... GTAAAATACCAGGTTCCCTACTATAATCGTTACTGCC 856782 25 100.0 38 ......................... ATATATAGGTTCCATGTCATTGCTCCCCAACCATAATC 856845 25 100.0 38 ......................... ACGTTCAACTTTAGCGATTCATCTACTTTCTCTTCATT 856908 25 100.0 39 ......................... TAAGCTTATCAGATATTCTACAGCTTTGTCAAATTCTTT 856972 25 100.0 39 ......................... TCTTTTAGTGTTGAAAGATTTGCTTTATCATTTAAAAAT 857036 25 100.0 40 ......................... TCGTGAGGGCAGAGATAGCAAAGAAGTCAAAGTATAATGC 857101 25 100.0 37 ......................... ATAAGTTTAACGCCTAGGGTACTCCCTGCGTAAATTC 857163 25 100.0 34 ......................... GTTAAGCTCTATGTCCTGCAGGATAATACTTTTG 857222 25 100.0 38 ......................... AATCATATACTGTATCGTTCGTTACAATCACGTTATAT 857285 25 100.0 36 ......................... TTGCTAATGATTCAACGTTAGTCTCTACTATTTCTT 857346 25 100.0 39 ......................... TTCATGAAAACATCTCTGTCAAGTCTTTTTAATCCTAAA 857410 25 100.0 36 ......................... TATTACTCTTAGCAGCTTGCTCATAATTTATACTAA 857471 25 100.0 38 ......................... TATTTTGCCCAATAGGTCTTTCGGAGTTATACCTTTCT 857534 25 100.0 51 ......................... TCTCATCTTTAGTGCTTCTTTCTAAGCTCTTCCCATTCCTTCCTTATCTCC 857610 25 100.0 35 ......................... TCTCATCTTTAGCAATAAATCATGAGTTACTGGAA 857670 25 100.0 36 ......................... ATTTTTATCGCCCCGTCAATCATCAGATCTTTAACG 857731 25 100.0 37 ......................... ATAGATAGAAATTACTCTCTACTGGATCCGCAACTTC 857793 25 100.0 39 ......................... TTAGGAAGAAGGGGGACTACTGTAGTGTGTGTTACAATA 857857 25 100.0 36 ......................... CATATATAGTGAATTTCTTTTGAGATAATAGATTAT 857918 25 100.0 40 ......................... TAGACAGGTCAGTATAGGTCTTACCATCTAATAAAGCAAG 857983 25 100.0 37 ......................... ATTACACTTAAGATTGTTGCTTTTTTACCTATTACTG 858045 25 100.0 37 ......................... TTCTACACTTTCAGAGAACATAGTTTCTTTATTTACA 858107 25 100.0 41 ......................... ATAACTCTACTACTATTTTCTCATGTAAATTCCTAGTGCAT 858173 25 100.0 35 ......................... CTGTTACTCAAATATTATTCACCTCCATCTTTTGT 858233 25 100.0 37 ......................... TTTAATCTTATTTCTTATGTCTATGCCTTCTTCACGT 858295 25 100.0 41 ......................... ATTTAAATTATATTTTAGGGCGTATCTGTCTAGCAGTTGTA 858361 25 100.0 41 ......................... TTATTATTTACAGTTATTCTTATCTTTGCCATCCTCACCAC 858427 25 100.0 38 ......................... TCAAAATGAGTAATTTTTCTTCATGCAACATAATTCAC 858490 25 100.0 38 ......................... TCTTTCACATACGTTTCTATACGCTTCTTCTTTCCATC 858553 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGACGATTACTAACCTAC 858618 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ==================================================== ================== 86 25 99.9 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGTCATCTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCTCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAAAAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGATCTCCAGAGGAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATATCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 883999-878512 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJT01000001.1 Sulfolobus islandicus M.16.47 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 883998 24 100.0 38 ........................ ATAGATACTGATGAAATATTTAGACCACTTGATGATGC 883936 24 100.0 39 ........................ ATTAAGGATTATAAACTCTTATAGGCCAGGCATCTGCAG 883873 24 100.0 39 ........................ CTAAATGAATATGAAGCACGGTTGTTATATGATTTAGTA 883810 24 100.0 39 ........................ TTAGCACGAAGTCTCCCAATAGATGCCGTTATTTCTTTT 883747 24 100.0 40 ........................ GAAAGTAATGAATAACGAGTTAGCATATAATTTAAATATA 883683 24 100.0 40 ........................ TTAGGACAACACCCTCAACCCAGTTGAACTTATTGATGGC 883619 24 100.0 38 ........................ ATGATGATCGAAACGTTCAAAAAGAGACAGCGTGGAGT 883557 24 100.0 40 ........................ AGGATGAACCCATCGTGATTAATTTAAGTGCTGCAGCAAC 883493 24 100.0 38 ........................ CTACGTCTTACAATAAAGTATAGCATTTCCTCATGTAG 883431 24 100.0 40 ........................ ATTGACTTAGTGAATAGTAACGGATATAGATATACTTCTT 883367 24 100.0 40 ........................ CAACGTCTGCAATAAACCTAAGCTCGATAACTGGAGTACT 883303 24 100.0 39 ........................ ACTTTAGCGTTAGAAGTATATTCTTCGCAACCTTCTTTC 883240 24 100.0 38 ........................ TATTTCTCATGAAAAACGACCTGATTAAACTGATGAAG 883178 24 100.0 40 ........................ TATTATAAAGCTTTTCACTTTTTGAAAACAGAAAACTTTA 883114 24 100.0 40 ........................ ATGATCTTCAAATTCCAGACAAAACATAGCGATGGTGTTG 883050 24 100.0 40 ........................ CCTAGTAATTTGTTCCAGGAAATTCTTTACTACATTGGGC 882986 24 100.0 41 ........................ AGAATGAGTTAGTTAAATTAGGGTGAAAAAATGCCCATCCA 882921 24 100.0 40 ........................ GTTTCAGTAATTAGCAAACTGATATCGCTATTTGGCACTA 882857 24 100.0 39 ........................ AGACACTTATTGTTAATGTATTCCCACTATTTGATAGTG 882794 24 100.0 40 ........................ TATTAAATCCGAAAGCACGTTAGTGAGAGAGAAAGATTTA 882730 24 100.0 39 ........................ GACGTTGTTATTTAGCTTATGAGTTTCCCTAATTCGTTA 882667 24 100.0 35 ........................ TATTTAGCTACGTATACAATACTGTATAACATATT 882608 24 100.0 40 ........................ TCTGATGCATAAAATGTTGCAGTAGTTATTTCTTGTGATC 882544 24 100.0 41 ........................ AATTCGTTAGAAAACGGGTTTTCACAAGCACTTGAAGCGTT 882479 24 100.0 41 ........................ ACATGTATAAGAGTTGCATAATTGGTTTCCTGTAAATACGC 882414 24 100.0 38 ........................ AATGCTTTAAGTTTTTGCTCCACGCTTTTTCTTGGCTT 882352 24 100.0 41 ........................ TTTTCATCAGTAGTTTCGCTAATATAAACGTAATAATCGTC 882287 24 100.0 41 ........................ AATACGTTGAACCAATACTAAGACCAGTTACAATTGCGAAT 882222 24 100.0 40 ........................ ATTCTATCCATCAATGCATCAATCATACTATCGTTAAGTT 882158 24 100.0 42 ........................ GTGTACCTTAGTGGTAACATAAATGTGCAAAGTCTTGACTAT 882092 24 100.0 40 ........................ CAACTTCAGTGTATCTTGTACCATTTATCACTATTGCTAT 882028 24 100.0 39 ........................ AATGCAGTAAAGATGCGTTTGCAACTAGAGTATGAGACA 881965 24 100.0 40 ........................ CGGTACCTGATAATTTTGCTCTTTTATTGTAATCATTTTT 881901 24 100.0 41 ........................ GAAATTGTAGTTGATGATGAACATGACTATTTACATTTTAT 881836 24 100.0 41 ........................ ATGGTATATTTTGATTGGTAAGTGTTACATTTATTTCCCAC 881771 24 100.0 39 ........................ TACATATCTGCACTTGTAGCATATTGTTTTATAGCATTT 881708 24 100.0 41 ........................ TCGAGTGCTAGAGAATTAGCTAGTTCATTGACATCTTGTAC 881643 24 100.0 39 ........................ AATGCTTTAAGTTTTTGTTCTATATCTTCTACTTTTTGT 881580 24 100.0 39 ........................ ATAAGGAGCCGGTCTATTACACGACATCTTATAACATAC 881517 24 100.0 37 ........................ ATATTTTATCACCTGCTTCTTAATATAGTTCAAACAC 881456 24 100.0 37 ........................ TGCTTTACGTAAAACGTGTATATCATGCTAAAATCAC 881395 24 100.0 40 ........................ AATAGTTCTACTGTTTATTACATGAGTTCTTTTGCTGCAT 881331 24 100.0 39 ........................ ACCATGAATTCTTGATATAAAGTTTCTTAGTTCTGCCCA 881268 24 100.0 37 ........................ TCATAAATTGCTTAATTAGAAAGTCTTCAGTCACAAG 881207 24 100.0 40 ........................ ATGGGTAGACGGGGTTCGGAGGTCGGAGAGCCTGTTCAGA 881143 24 100.0 37 ........................ ATCCGTGATTTGCCCTCATCACGTATTCACTTATCTG 881082 24 100.0 40 ........................ TTATGCCTTTTGTAACCTCATCTGAGACTGTCGTTAGAAA 881018 24 100.0 37 ........................ TGATAGCAAAAGGATATAAAGATACTGATGAACTAAT 880957 24 100.0 43 ........................ AATAGCTCTAGTTCTAGCTCTACTGGACTTAGTGGCTCAACGC 880890 24 100.0 39 ........................ ATTATATGAAATATAATATTAGGTTTAAAAACGAATGAT 880827 24 100.0 37 ........................ ATCGAAGGCTTCTCCTACAACGGGAATTAGGGAAATT 880766 24 100.0 40 ........................ ATTTGTAGAATATTGAATTGGACATTGATTAGTGTTGCAT 880702 24 100.0 41 ........................ TATACTCCTACTATAATTTTTCCGCCCATTTCTAAAATTTC 880637 24 100.0 40 ........................ AGCTTATTTGAGATGTATGCTATGACTGCATCCCTCAAAA 880573 24 100.0 40 ........................ AATACGATTTTAGGTAAAGTAAACCAAGAGCTATTAAAGA 880509 24 100.0 40 ........................ TTTATCTACCATTTAGCTCACCCCTTGGTAATTAGTTTGT 880445 24 100.0 37 ........................ CTTGACGTCATAGACTTCATTCAAGGACGTAAACCTA 880384 24 100.0 40 ........................ TAGTTGGAAATAATACTGCAGGTGATGGTATAAACGCATA 880320 24 100.0 40 ........................ TTAATCAGTTTAGTAGTTCAAGACTTAGAAGAATAGCTCC 880256 24 100.0 41 ........................ TACTAGTAGCTCTAGCTCTGCTGGAGGATTTAGTGGATCTA 880191 24 100.0 42 ........................ TTTTAACGAATGTAGTCTTTCCGCTTTCCATCGGTCCAAAGA 880125 24 100.0 40 ........................ TATTTTATACGCTTTACAAAACTACCTACTCTAATTTTTT 880061 24 100.0 41 ........................ TTTAGAATGTCTGAGAATGTCTTACCCCTAGCCGTTGCGAG 879996 24 100.0 39 ........................ CTGTGGTTAAACCTAAGACTAAGTTGTTCGTTTTAACAG 879933 24 100.0 40 ........................ GTGACATCTATACCCTGGAAACCGAACATTAGAGCTTCTT 879869 24 100.0 40 ........................ TATTTTATACGCTTTACAAAACTACCTACTCTAATTTTTT 879805 24 100.0 41 ........................ TTTAGAATGTCTGAGAATGTCTTACCCCTAGCCGTTGCGAG 879740 24 100.0 39 ........................ CTGTGGTTAAACCTAAGACTAAGTTGTTCGTTTTAACAG 879677 24 100.0 40 ........................ GTGACATCTATACCCTGGAAACCGAACATTAGAGCTTCTT 879613 24 100.0 42 ........................ GTTATTTACTGCGGTTTCGGGGTTCCTAATTGTTTTTGCCAT 879547 24 100.0 41 ........................ CAAAGTTATACACAAGCTGCAGGAAATATAATAAACTATTA 879482 24 100.0 41 ........................ CTAATCTCATCATTAAAGTTATTATATTCACTCAATATAAT 879417 24 100.0 42 ........................ GTATCGGGATTTATTAATACCACTGCATTATCATTTACACTT 879351 24 100.0 38 ........................ CATAGAGATTATTAGCATCAACATTTTGTACTGATGAT 879289 24 100.0 38 ........................ TTTTTTACACCCAAGTTTTCATTTTTGATGTTGCAGGT 879227 24 100.0 39 ........................ GAATAACGAAGAAGCACCGATAAGCAATGCGTTGCCTCA 879164 24 100.0 40 ........................ GTTTGCAGTACCTTTTATTCCCTCATCCTCAAGTAGTTCC 879100 24 100.0 39 ........................ TAGCTCTTCTCGTAAGATTGCTTAGCAAGATAAAGAAGT 879037 24 100.0 38 ........................ TATAGTACTTATAGCCCATGATTGAAAACACGATATTA 878975 24 100.0 39 ........................ ATTAAACGCTTATTCTACCATTATAGAACGCCTATTTTA 878912 24 100.0 40 ........................ AACAATTAATTGCTAATAACCCTTCATTAAAACAAAAATT 878848 24 100.0 39 ........................ CTCAGAGTGGGGCTGTTCGGCTCTACAAGAACGGAGTCC 878785 24 100.0 38 ........................ GTTGTATTATATTATTTACTATTTTCTTCTTTTTAGGT 878723 24 95.8 38 ........T............... CCAGAATGACGTGTTAGGATTTGTATTATAACTTATAC 878661 24 100.0 39 ........................ CCTCCTCCAGACTGAGAAAATTCTCCCCTTCTTAACCTA 878598 24 100.0 39 ........................ ATCATTATTATAGCCCCGCTATCGAAAGTAGCATTAGGT 878535 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== =========================================== ================== 87 24 99.9 40 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTATGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGAAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATAGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 888596-893135 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJT01000001.1 Sulfolobus islandicus M.16.47 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 888596 24 100.0 39 ........................ TGTTTTGTATACAGACTCACGAAGTTATAGCCGTACCAA 888659 24 100.0 39 ........................ GCGACGGCGGGGTAGAAAAATATAAGTCTCCCCCGCCAG 888722 24 100.0 39 ........................ TTTGCTGTACGTAAATTTGTATACCATTAGTAGATGGAG 888785 24 100.0 42 ........................ GGCGATGATGTTAATTCAGTCTCATAAAATCCTAGATTAGAA 888851 24 100.0 39 ........................ CAAACAAACATCTATGTGTTATGCTTACCGACAAACACA 888914 24 100.0 42 ........................ CAACTATGAAGACGAAAATGTAGATGATGTAGCTAGGTATGA 888980 24 100.0 41 ........................ ATCTCCTATACTGACTTTAAACCCGCCGACTATTTTCTCTA 889045 24 100.0 39 ........................ GAATAGAACTATAGCAGAAATAACAGCTTGCACTCCGAA 889108 24 100.0 38 ........................ AATTTTATGACTACGCCACCCATACCTTTAGCACGTAA 889170 24 100.0 39 ........................ TTCTTGTAATGTCGTTATGTTACCATCATCTTTAATCTC 889233 24 100.0 40 ........................ ATATTTTTACTTCAAACATGAAGACCCATTATTACAACTT 889297 24 100.0 40 ........................ TTTAAGGAGATGGTTTTATGAAAATTGCAGATAAGGTCAA 889361 24 100.0 37 ........................ TATTTACACCGCCTTTCCCATTACCCTATCGCGGTTT 889422 24 100.0 37 ........................ CCATATCCAGGATTTCCCTGTGGAGGCCACCAGAATG 889483 24 100.0 38 ........................ TTGTAATAAATATTGGCTACCATTATGATACTCTACTA 889545 24 95.8 41 .......................A GTGATTTCCACTTCTTGAAGTGTGTAGTTTGTTTGATATCA 889610 24 100.0 38 ........................ TACTTACACCCTTGTTTTAAGTATCTATTTTTGGGTTT 889672 24 100.0 38 ........................ GTGGGGGTGGGGGAACCCCCCGCGGGGTTTACTGAACT 889734 24 100.0 42 ........................ CGTGATAATTATAAATGGGCTGAGGCTATGGGTAATAAAGTT 889800 24 100.0 37 ........................ TTAAATGATCCAATAGGATTTGTAATTGTTGTAGAAC 889861 24 100.0 39 ........................ AACCTAAGGTTAAGGCTTCTACGTGCTGTTTTAGGTCAT 889924 24 100.0 38 ........................ AAGTAGGTACGTATAAGTCCGCATTCACACGTTTAACC 889986 24 100.0 40 ........................ TCAGTCGTTTCAACGGCTGTAAACATTGACTATTCAAATG 890050 24 100.0 40 ........................ ACTCCCACCTCGTCTCCACTACCACCCAACTGTATTCAAG 890114 24 100.0 43 ........................ GTGTACATCCATCATTGCTTTTATTGAACAGATTATGTCATTA 890181 24 100.0 39 ........................ GCACCCTCACTAGCCTTTATAAGATCAGTAGAAATTTTC 890244 24 100.0 38 ........................ TCTAGTATAACTTTATACAAAAGCGGAACTGCAAATAT 890306 24 100.0 40 ........................ ATTGTTTTCTTATTTTCTTATCCATCATACTTTCTTCCCC 890370 24 100.0 39 ........................ GTAATAGATAATTCCTCGTTTCTATCGTTGAAAGGATCG 890433 24 100.0 38 ........................ ATAGCAATATGATGTACTATATTTAAATGAAAAACTGT 890495 24 100.0 39 ........................ TACTTTTTCTTCACCTTTGATATTTAATTTTACTATGAT 890558 24 100.0 41 ........................ GTTATTCTATTAAATGTGCATACTTCTTGATTTGCCGCCAT 890623 24 100.0 38 ........................ CTAGTGCCAGGGTTCAGGGGTGTACCCTCACTGCCACA 890685 24 100.0 39 ........................ TTTAGATTAAGTTTTACATAAATTATAGACACGATAACA 890748 24 100.0 38 ........................ ATCATCAGGCCCATGAGCGTTTTGCCGGTGCCGGTCGG 890810 24 100.0 43 ........................ AGGACGTAATTCTACAATTGTTCTAGTAACTCCTTGGGGCGGA 890877 24 100.0 40 ........................ ATAAAATTGAAGGGCATGGAACAAGACGTTATAGAGGAAT 890941 24 100.0 40 ........................ AAATGCGTATCAAGTTGCAGAGCAGAACAATATAAGTAGT 891005 24 100.0 39 ........................ ATCTTCAAAATATGCCTTAATTCGTCTTCGGACGTCGCA 891068 24 100.0 38 ........................ TCATAAGGTTTTACTGTTGCAGTAGGTGTTAAATTAGA 891130 24 100.0 38 ........................ TTCTAATAGCTGAACCCCTGCTTGATAGTCTCTATTAA 891192 24 100.0 39 ........................ AAACAAACTTCTCAACCATCAACAACACCACCTACATCG 891255 24 100.0 41 ........................ AACAACTGGATTTTTTGAATGATTGACACTTTTATGACTAT G [891272] 891321 24 100.0 39 ........................ ATCGACATGTTGGGGACCTTTAGTATGGGCATATTTGAG 891384 24 100.0 44 ........................ TGGATCTGAGTTTTTAACGATTTTTCTTAGCAAACTGGGGGAGT 891452 24 100.0 40 ........................ ATGTCGTTAAATGCATTTGATAGTAAATTTACCGCATTTT 891516 24 100.0 38 ........................ TATATGCCATCACTCACACCAGCATTAGCAGTAGCGGT 891578 24 100.0 39 ........................ ATAGAAGGGGCGAAAGGAAGAGCAATAAGTGCTATCATT 891641 24 100.0 39 ........................ GTTAATGACTAATTCTATAGATTTGGAGGAATATTGTAG 891704 24 100.0 40 ........................ AAAATATTGTTTGGTGTTGTATTTATTTGTGCCAAATTAG 891768 24 100.0 38 ........................ TATTTATACAGTAAAGTTTTGGCAAATTCCAATTGTAA 891830 24 100.0 40 ........................ TAGTATAATCCGCGTATTCACCGTTTATCACGTTTTCAAT 891894 24 100.0 43 ........................ ATTAATTCTTTCTTCTTTTGCTCATAATATTTTATTTCATCTT 891961 24 100.0 41 ........................ ATTTTTTCCCAAACCGATTTGAGAAACGAAAAAAACTCATC 892026 24 100.0 40 ........................ ATAAACTAAATATTGACGTGAAACCGCAACTAATAGATAA 892090 24 100.0 43 ........................ ATAACAATAATAAATGTTACTATTGAGGGCGTATTATTCCCAG 892157 24 100.0 41 ........................ TTGTAGTTGCATCTCCTTATTGCCGTTTCTGAACTTCTTTT 892222 24 100.0 41 ........................ AAAAGAGTATTAATTGATCTGGCTATAGCGTCCTTCCTTAT 892287 24 100.0 37 ........................ AGATTTTGTAGTGCTTCTTGCAGCAGTAAAGCTCTAG 892348 24 100.0 40 ........................ CTATCGGCTTATATCTAACATCCTCTGGGAGGCTTTCCAT 892412 24 100.0 40 ........................ GGCGTGTCGCCTCATCTTTATCAATTCGTAAAGCTCCATC 892476 24 100.0 39 ........................ GTATGCTTATCGTATAAAGTAATTTGCCAAAGTTGTACG 892539 24 100.0 39 ........................ TTCGATTTTGGGAATCCCACCGCCCAGCAATTCGCAGAC 892602 24 100.0 40 ........................ AACTCCAGTACTGCTTCGCCGTAGGATCCGTCCTCAGACG 892666 24 100.0 39 ........................ TTTCTATTAAGAGAAAGTTACACTTTATCAAAAGACACT 892729 24 100.0 37 ........................ AGAAACAGTGTATGGGATAAATTAGGTATAAGTGGCG 892790 24 100.0 39 ........................ CCACCACCACAGTATATAATACATTTGATGGATTATTAA 892853 24 100.0 40 ........................ TACTTCATCACGTCCACGTTTGTTATTTTTGTTGATTTAA 892917 24 100.0 38 ........................ ATTCCAAAGTTACGTCATCGATGACCACGTAATGGAAA 892979 24 100.0 40 ........................ GAATAAGCGGGGCGAAGCCGACGTGTACGCCGTGTCTTTC 893043 24 100.0 45 ........................ TCTTATATAAAATCAAAATTGTATGAAATCCAAGCTGAAGTTTTT 893112 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================= ================== 72 24 99.9 40 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAAGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTATGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATGGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGAGCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //