Array 1 171271-172885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNJ01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171271 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171332 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171393 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171454 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171515 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171576 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171637 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171698 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171759 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171820 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171881 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171942 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172003 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172064 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172125 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172186 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172247 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172308 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172369 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172431 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172492 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172553 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172614 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172675 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172736 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172797 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172858 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189393-191801 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNJ01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189393 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189454 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189515 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189576 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189637 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189698 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189759 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189820 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189881 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189942 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190003 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190064 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190125 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190186 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190247 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190308 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190369 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190430 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190491 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190552 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190613 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190674 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190735 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190796 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190857 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190918 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190979 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191040 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191101 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191162 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191223 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191284 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191345 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191406 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191467 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191528 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191589 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191650 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191711 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191772 29 93.1 0 A...........T................ | A [191798] ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //