Array 1 423980-424410 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000018.1 Paenibacillus peoriae KCTC 3763 contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 423980 32 100.0 34 ................................ ATTCAAGGGTGGCGGAGTACCACCAAGAAACAAA 424046 32 100.0 35 ................................ ACTTATTGGTATAACCAATACCTTCACCCCTTAAT 424113 32 100.0 35 ................................ ATTTTGGTTATAATATTTGATAAGACGCTGAATCA 424180 32 100.0 35 ................................ TAGGCTTGTCTCCCAATGAAACGCTAGAAATTTGA 424247 32 100.0 35 ................................ AATTATGTTTGCGACATGATCGGGATTGATCACCA 424314 32 100.0 33 ................................ CCTGAGGACCTAATCTTATTTATAACTACGTGG 424379 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAGCCGCAAGCAAGTATTTGATTGCCGTCTGGAAACGACGGATGGCCTCTTTTGCTTCACACTTCAAGAGCTGCCGCGTGAGACGGCAGAGGCGATTGTGCGTTGTAGCGGAGAACTGAACGTATTTTGTTTTGTAACGCCGGAGGATAAATCCATTGTGAAGCATTGGTATTACGTTACCCCGGAAAGCGTGAAATATAACGATCAGACAGGTGAGCTTACGCTCGAAGCTGATTCTAAGATTGAATATCATCCCGAGGAGTATTGGGGAGATTAGCACTATTTTATATTGAAATTTTAAAGTGGCTATCCAAGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGCCCTTCGCACCTCGAAATTTGTCGAAAAAGGCATGGGAAGGGTGTTGGCGATTAAAAGTCAACACTTGATCCAGCCCTTTTCGGCATTGTTTATTACAGGAATGTGAGAGATTGATACCATTGGGGTATCAATCTCTCCATTTTCGCT # Right flank : TCAGTCTTAAGGTGCACCCCTCCAGTTAGTTGCCGCAGCAACGCAAATGTACCTAGCAGTATAGCGGCCTCCACCACCTTTCCTGTGATGGTAGCAATCCCTAAAGTAAAAACCAAAATAAATACCATGTTTAGTAATACAGCTAGAGCGTACTTTAACACAGGTACCGTAGCTTGATGATCCGGTGTAGAGGCCTTTATGTAATGTGCTATACGTTCTGCCATTGTTTCGATCATAGCGCCACTCCTTTTACCTATTATATTGGATTTAAGTGATTTTTTGTTATATTATGGTGGAAATGATTTCTTCTAATTTGATCCAACTAAAATCATCTTCCCCATAAGACAGCTTTACTACGCGCCTGGTTGTGTTATGTAGAAATTATATAGCGAACATACGTTCTAAACGAGTAGTTATTAGCATAAAAAAAGAGCCTCTATTCTGAGGCTCTAACATTATTACTGCGATATCTCAATAAAACAATATTATCTATAATGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 163089-164131 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000011.1 Paenibacillus peoriae KCTC 3763 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 163089 32 100.0 37 ................................ AAATAATCTAACATCTGCTTAAGCAGCGCATAAATGG 163158 32 100.0 36 ................................ TTCCTCGTCGACCACAGCGAACGTATTATCCTTTTT 163226 32 100.0 34 ................................ TTGATACTTGTGAAACTGTTACTTGTTAGCTCAT 163292 32 100.0 34 ................................ TCTGCTGGCTGCGTAACTGCCGCTGGCTGCTCCG 163358 32 100.0 36 ................................ GTCCAGGTCACTAGCAAATAATCAGGCCCGGCTTCC 163426 32 100.0 34 ................................ ACCTGTATGTTTGTATTAGCAGAGCCCGTCCCAA 163492 32 100.0 37 ................................ TGGCCATTTATCAGCAAAGCCCATCCTACGGAAATAG 163561 32 100.0 36 ................................ ATTTCCCCCATGGCGATTATTTTGTAACTGATCTCA 163629 32 100.0 36 ................................ ATCCTTACCGCCGAATAAGAAAAACTGGTTGCTTAC 163697 32 100.0 35 ................................ TGAATGGAGGGGGGACCATAAGCGCCCTTAATAAA 163764 32 100.0 34 ................................ TGTACAGGAGGAAAAGACCATATCCACCGCAGCA 163830 32 100.0 36 ................................ AATTGGATCATCTCGTTGTTGATGATCCAGATTATC 163898 32 100.0 36 ................................ TTTTGTGCTTTTTATAATAAACGGACTTTTTTTCAG 163966 32 93.8 34 .........C...................G.. GCTCGATAAACGCTAACTTCGCTATCATCACACT 164032 32 93.8 35 ..................T...T......... CCTTTCGTCTTGAAATCGAATTTGATAGGATACCA 164099 32 71.9 0 ..............T...A..C.C...TTCGC | A [164120] ========== ====== ====== ====== ================================ ===================================== ================== 16 32 97.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATCCTGTGGAAGCATTGTCTGTTTATTTTCTGGAGTCGGTAGATATCCATACTCATTGGGAATGGCGAGATGCTGGTGGTACAAGCGAAAAGGCTATTCAGTATAAAAGAGAAGCTCCTTTCATGACGCTAACTCAGGCTATTGAGAGGGCTGAAGGGGAGAGGTATGCCTGTACCTAAAATATTCTAACGTATTACATTCCTAAGTATAAAACAGGGCTTGACTGGATTGAAGATAGGAATACCACACGGATATATAGCAGGTCAAATATAGTATTGGTTGCATTGTATATGGATTGCAAAATATAATAAATAAAGCTGGTGCGAATCCCAAGCGCACATGAAAATCCTGGGTCCTTCGCACCTCGAAAATTGTCGAAAAGTATTGGATCGGCTATCTATCCGTAAAAGTCAATAGCTGATCCAAGCTTATTGGGCATCAGTTTTTGCGACAATGTGTGGAAATGATATCCTATGGATATGAATTACTGTATTTTCGCT # Right flank : CCAAGTATAGATACAAATCTTATTTAGACTGGCTCCCTTTTAAATTAAGGGAGCCTTTTTCGTTGTGATTTTTAAATACAGAAAAAGTAGAAAAAGAGAGGCTTCTTCCATGATGCTAACCTCAAGTTATAAAAAAATATCAAAACAGTATCTTCCATTAAAACTAGGATTGCTTTATGATAAAGGTAGACATCCTAGAATTTTACTGTAGTTATTTAGGGAATAGCTGAATTTCTTTAACACATTTGAGAGGAGACTTCAGAATGAAAAGATTCAGAAAAGTGATTTCAGTTACATTAAGCTCAATGCTCCTGCTTTCATTCGGGATGACGGCGAACGCGAGTGCAAGCACAGAGGAGAAGGCGGATCAAGCGATTCAAGCAACTTCTGATGTACAGCTAACAACGGATAAAGAAAGCGTTATTAAACAATTGACGCGTGCGGACAAGCCTGACAGTATTACAGATTCGGTGTACACCATTACAGAAAATATCAACTTG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 364000-363309 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000012.1 Paenibacillus peoriae KCTC 3763 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 363999 32 100.0 35 ................................ TCAATTTGCTTGGCTGAGTCCTCCACTATCTTACG 363932 32 90.6 23 .............................CGG CTTTTGCTATGACGGTAGATCTG Deletion [363878] 363877 32 100.0 36 ................................ AAGACGTCTATGAAGCGTCTGACGAGCTGGTTTGTG 363809 32 100.0 36 ................................ TATGCTATTCATTCCGACTTAGATTCCATTTTCGAG 363741 32 100.0 36 ................................ TTATGCCAATATTAATAAGTGCTGATTCATAGCCAT 363673 32 100.0 35 ................................ ATTCGTGCCATGCTACCCGACAAGCGCAAATGATT 363606 32 100.0 34 ................................ AGCAGTTCTAAAGATGGCAGCTGCTTCCTCGGCT 363540 32 100.0 34 ................................ CGATTCGCGCCAGTAAAAATTAACTTTTTCCGAA G [363526] 363473 32 93.8 35 ..........AC.................... TATAGCCAACAGTTCGCCCCGTCTAAAGCCTCCAA 363406 32 93.8 34 .........CA..................... CCCTTATGGAGGGCCGTTCCCTCCTAAATTAGTT 363340 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 34 GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Left flank : CTCCATTTTTGTGGAAGTAGGTGTGAAACTTGCTTATTTTGATTACTTATGATGTAAGTACGGTGGACAGAGAAGGAAGAAGGAGGCTGGCAAAGGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCCGTATTTGAATGTATTTTGGATTCGACCCAGTTCCGCCGTTTAAAGTATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAACTTAGGCGATAACTACAAAAAGAAAGTAGAGCATATAGGGGTCAAAGAGGCTTACGATATGGAAAGCCCACTCATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAAGGTTTGAGTTGGTTATTTTCGATAAATGTCAATGCTTGATTCAAGCCTTTTCGGTATCGTTTTTTGCGGAAATGTGTGAAATTGATATCACTAGGGTATGAATTACTGTATTTTCGCT # Right flank : TTTACGGACATATTGTCGAATCATTGCACGATAAGCCGCACTTTGTAGTATGTAAAGCTTATTACTTGGATAATCCAATTTCATTCCTGTTACTCGTCCCATCAAGTCCACTAATGCATAAATCATGCTTAACTTTTTTTTCGAACATTGTTTGCATAAAATATTGACAGGTGGTGAATTATGGAGAAGAATAGAGGATGAATTTTAAAATTATGGGATTTTTATGTGAAGGGTGGTTATGACTTGATGCATACACCTACGGTTTCGGCGGAGTTTGAGGATTATTTAAAGCAAAATGATATAACACTGGGTCAATTTGCGGAAAATTCTGGGGTTCATCAAAGAACACTTAGTAATTGGATTACTCAGCATCGTCCTGTTTCCGTGCAGCAGCTTGACCGAATTACTTTGGCAATGGGCTTACCGGAAGGCTACTTTTACGGCCTTTACATAGAAAACTACATCATTAACCGTTCCCCCAATATGCGCCGAATTGAGCC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 374168-373399 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000012.1 Paenibacillus peoriae KCTC 3763 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 374167 32 100.0 34 ................................ TCAATTTCCTCATAAACTTGCTTTGGAACGTTTA 374101 32 100.0 34 ................................ TCCTGGTTGAGCTAACAGCAATTCGGTAGACGTG 374035 32 100.0 35 ................................ TCAGGACAAGCCCAAATTTACGCTCCTTCCAAACA 373968 32 100.0 35 ................................ TAATTCATCGAGACTGGAACAATGCTTTAAGCTCA 373901 32 100.0 33 ................................ TGTACAGTTTAAGGATGCAGGATACAACGCTCA 373836 32 100.0 36 ................................ CTTGTAGCTCTCGGCCCCTCTGGGTTGTCTCCGCTC 373768 32 100.0 33 ................................ ACGCACCTCGTCCTCGTCAAACGGCCTACGCTG 373703 32 100.0 37 ................................ AGTTTGAAAATCGGATCATATTTAAACTTGGCCCGTT 373634 32 100.0 37 ................................ CATCTTGAGTAATGTTGTCGAAAATCGTATATTTACA 373565 32 100.0 35 ................................ TCGCAATCCAGTTACTGCACAAAAGTGCTCCATTT 373498 32 93.8 36 ............AT.................. TGAAAGAAGCATTGGGTGTAAAAGCACTAAGCGCCG 373430 32 90.6 0 ............AT......A........... | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 98.7 35 GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Left flank : GTACAGGTATGAAGATCAAAACCAATGAGTGGACACATCTCGCCTTCACAGTGGACAATGGAGTGCTATTCGTGTACGTGAACGGCAAACCTCAGTTTACAGGCGCAGGATTTCCGAATGTATTTACATCCAAAGCCGGAACTTTCAGCTTAGGTGTTAACTGGTGGGACCCTGCCTTTAAAGGCGCAATTGATGAGCTAAGTATATTCGAAGGGGCGCTTCCTCCTTCACAGGTGGCTGAGCTGGCCAAGGTGAAATGAATCTAGGCACGTACTTGTTGCCAAAGCAAAAAGGAATTTCTTGAAAGCAAGTCTGTTCAGGTGCGAATGTGATGCTCACATGAATTCCCCAGGTCCTTCGCACCTCATATTTTGTCGAAGCCCTGTCGAATATGAATAAGTTGTGAACGGATTACAAGGGAATAAAGCAATAATTAATGTAATTTGGTCGGAATAACGCTAAAATAATACTTAATGGGTGGTTTTTGACCCATTTTCGCT # Right flank : CGTTGACATTCTTATAATTACGAAGCAAAAGAAGTAATACTGGACTTTAACTGCGAGCTTGATAGGAAGCTAATAAAGGGAGTTAGAGAAAAACGGACAGGAACTAAGTGTAATTCAATAACTTTGTGAAGAGGCACAAAGGATAGGGGAAAAGACGGAAATTATGTTTAAAAAGCATGAGAAAACCCGCTAAGGGCGGGCTCTTCAATATAATTATATAGTTTTCAATCCACGCCTTTCAGCGACATGCCGAGTGTATCATAAACTGTTAGTTTAAAGCAATTTTTTAAGGGCTAGGTTGCAAAACATAAATCTTTTTGATCTTTTGGGAGATGTATTACTGTGTTTTATATAAGGTTCCTATAAAATTATATTACAATCTAAGATAAACAATATTAACTTTCATTATGTTTATTAGTAAAATTCAAGGAGGCGCATAAAGATGGAGAAATTTAATGTTTTGTTGCGAGTTGATAGATTTAATTATGATGAGTTATTAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 382195-381147 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000012.1 Paenibacillus peoriae KCTC 3763 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 382194 32 100.0 33 ................................ AAAACACGATGCAGACGGTCAGACACAAGCCAG 382129 32 100.0 36 ................................ AATATAAGTATCACCAGTTTTTATTACGAACTGGTT 382061 32 100.0 36 ................................ TGGCCAAAGCCCTGCGAACGGATATTTAAGTGCTTG 381993 32 100.0 36 ................................ CATTCCGCTTCAGGATCAGGCGCAGCCGGATCTACC 381925 32 100.0 35 ................................ TGTAAGCGGTACAGGCGGCTTTACCTCACCTATCA 381858 32 100.0 34 ................................ ACTGGAACTCATTCTCTGCCCCATTTTGATTTCC 381792 32 100.0 36 ................................ TTTTTTGATAAGGTGTTCTAAAGCTAAATCAATTGT 381724 32 100.0 37 ................................ TTCTGCGGTCAGGCTGCTTAAGTCCTGATTCGTGTTG 381655 32 100.0 36 ................................ ATTGTATTAATCTCCTTCACATTTGTAATGAGCCGC 381587 32 100.0 36 ................................ AAATAAGATCCATTTCGGTATACGTTGTATTTCTGG 381519 32 100.0 36 ................................ CAAACATGTCCATTATGCTTGCTGAATTTCCATCAC 381451 32 100.0 37 ................................ CATCCAAGCAAATTACACTACTGGGCTGTGCAGCCAC 381382 32 100.0 37 ................................ TTGACTTTTGGTCGTGTTTGTGAATTAAATAAGCCCG 381313 32 100.0 35 ................................ AAGTCACAGGGGTGGGTGACTACATGAAGAAGGTT 381246 32 100.0 37 ................................ CCTAAAGTGGAAATGTCACCGGAGGGGTTTAAGGCAT 381177 31 96.9 0 ...........................-.... | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 99.8 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATTCCGTATTCGTGTCAATGTCATCTATCCGGGTGCCATTTCGACCAATATTGATGAAACAACGGAGAAATCCGAAAGATTAAAGCAGATCACCATCCCCGTTCAGTTTCCCGAAGGTGGACAGCCGTTGGCTCATGGGCCCGGTCAACCTGAGCAGGTAGCTGATTTGGTGACCTTCTTGGCTTCGGATTATTCGCGCCACATTACCGGCGCACAAATTGTAATTGATGGTGCGGAATCTTTATTGTTTTAGCGCTAAAGCATTCTCTATGACGGAAAAAGGATTTATGGTATCCTGTTTGTAACATTTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAAAATTGATTTCATTTATAAAAGTCAATCGTAGATTCAGGCTTTTCCAGTATTGTTTATTTTGAAATTGTACCGAATTGATACCTTTTTTGGATCAATTGGGTACATTTTCGCT # Right flank : TTCCGTAGCACCGGGGGCACACCCGCAAATCACGGTCGCATTCCATGCGACAAATTGACGATGTGGCAGGATTCACGGTCGGTCGTTAGTGGAAAGAGATAAGGATATGAGGCCATACAGGGCATAAAAGGCGTTAGAACCACCGCAGGATAGAAAATCCAGTGCGGTGGTTCTTTTTTTTCTCTCGTCTTCTATGCCATCATTATAGATGGAGGCGATAAAGGATGTTCCAGGATTTTAAGCTCGTCGGTGACCGTCCGGTCGCGATACAAGTGAAAGAATATGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCAAATCAGAAGCTGCCTTCCACACGAGAAATGAGCGGTCTGCTTAAGGTGAGCCGCAATACAGTCATTGCAGCCTATGAAGGCTTGGAGGATGACGGATTTACGTATGCGATTCCCGGCAAAGGCAGCTATGTGGCCGCCATGGTGGGCCAGTCGGCTGCAGATAACGAAGGAACTGATGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 635731-634912 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000041.1 Paenibacillus peoriae KCTC 3763 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 635730 30 100.0 33 .............................. CGGATCGAGCAGATCCGGAAGAAACCATAGGAG 635667 30 100.0 37 .............................. CTTTCTTTGCTATTTGAAAGTGAACAGTGCTAAGGAC 635600 30 100.0 36 .............................. CGTATTGGTGCTTCGGGTGCTTTCTGGCTCGCTCGC 635534 30 100.0 37 .............................. AAAAGACTGTGACGATCTCCATGCCAAAAGGCGAGTG 635467 30 100.0 36 .............................. TCAAGTCGACACATTTCCTCATACCGCTTAATGAGT 635401 30 100.0 34 .............................. GTGAGTGGGACAACCAATGTATCATCACGAACAT 635337 30 100.0 36 .............................. ATGTGAATTCTACCGGATACGTACCAGCCGCAAAGG 635271 30 100.0 36 .............................. AAGCACCATTAGAGTAATCATGTACATATTCAATTG 635205 30 100.0 36 .............................. AAAGATTCCTCCAGCCCGAAAAGGTCCATGCTGCCA 635139 30 100.0 37 .............................. GTGTCAAACAGCTCCCAAATGCGAGGGCCTACCATGC 635072 30 100.0 36 .............................. TACCTGATGCTGCTGGCCGTCCGGCTAAATCATATC 635006 30 100.0 35 .............................. TTGACCTAGCAGCTTGTAGCTTGGGAAAAGGTACA 634941 30 86.7 0 .........T.............CCC.... | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.0 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : GCCTTTTGTTCCCTTTTTGGAAAAGGAAAAGAGGTAAAGGATATGGCGAAAAATTATAACTATGTCATTCTGGTGTATGACATCGGAGAAAAGAGAGTGGGTAAGGTATTTAAAATATGTAAAAAGTATCTCGTTCATTTTCAGAAATCCGTATTTCGAGGTGAAATTACCCCCGCTAATTTAATTCAGCTACGCGCTGAGTTAAAAAAGGTTATTGATGAAGGGAACGACTTTGTTGCCGTTTTTAAGATGACAGGTGATTATGTTTTCGACGAGGAAATCATCGGTGCCCGCATGAATGATTCGGAGTCCTTATTGCTGTAATTTTCCCAACCGCCTTAGTAGACAAATAGCTGTTACTTCTTACAGCGACAAGGGTTAACGGGGATTTTCTATACCATTAGCTGCATCCGTCTTCCGGTTGGGAAAAAATTGCGAAACCCTTGGGGCTGTAGTAAACTAAGCACATTGCTGAATTTAAAAAGCTTGATTTTACTAGC # Right flank : ATTCCCAACCCGAAGGCACTAAAATAGATTTTTTCCTGCCCCAACACAAGATGTAACCAACTTACTAGCAATATAATTTTCCCCTATATTATACTGAAAGAGTTTACAAGCCGATCTTAGGAATAAGGTGTTATGATATCTGGGACATGTTTTATGCAAGAGGTCAGACATGTCAATCATGAGCTGCGGCACAGGACCGTTAATAAAGGAGAGCAACGATGTTTGTTATACGGGGAACACAAAAACTGCTGAAGGAATGGGATACCGAGCCACTTCACGTTGATATTTATCCGCCTTTAAATAGTTGGCATGCCAGCTTGTTTTTACTGAATCGGAGAAAAAATATTGTGTTTATGCATGATGCAACCCGCTTTAGCATTACGCTGTTTGGCATTAAAAAATCGCAGTACAAAAATCTGCCGACTCTTTTTATTCAAACCTTGAAGGAATTCATGATTAGCGAAGGCTTTGATGAGCAGATCGTAGAGGCATACACCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 645904-645412 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000041.1 Paenibacillus peoriae KCTC 3763 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 645903 30 100.0 36 .............................. CCCTATGGATTGAGTTTTTTTATGGTGTCATTTTGA 645837 30 100.0 36 .............................. TTGCCTGAAAATTTCAAAACAGGTAGCCGGAGGGAT 645771 30 100.0 35 .............................. TGGTTGATCGGTATCTTCAAACGCAACATGAATAA 645706 30 100.0 36 .............................. AGAGCAAAATAACCAAGCGTTCCGTCAGGCTTCTTT 645640 30 100.0 36 .............................. ACCCTTTGTTTGCAAAGTCTCTCACAGCCGGGCTGT 645574 30 100.0 37 .............................. TTTTGTATTCCCATGCTTCCTCGGCTTTACCTGGTCT 645507 30 100.0 36 .............................. GTAACTGACCACGTAGGCTTCCTGCCAGTACGTAAA 645441 30 76.7 0 .................A..A..C.C.GTC | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.1 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : AAATATCGTGGATATTCGAAATCAATCAATACTGCCTATTATTTTAAAATCGGTATTTACTTCTTTTTTAGTAAGTTTGGTATTGGGTTCAATTACTAATTGGCTATTCAGAAAGAAGTAGCTCACAGCCATTAGTAAGAATATATCCGGACAAAAAGAAAAGAAACATCGGATGTTACGGTCATAGTCTAGTTTTCAGTATTTTAAAACTAGAATTATAAATTTAAATACACCAAGTGTTTCATTCATTATGAGCAATTTTTTCTGATGCATTTTACATTATACTCTTAGGTAAGCGATCTCGACTAGACCAAAGGTCTATATTTTTCCCAACCTTATAACTAGCTAGAGAGAGGGGAATTCTTAGAACCACAGGGGATACAGCTATTTTTCTTAACACTTGGCAAGAAGCGACCTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAACCACATTGCGATTTTAGAAAGCTTGATTTTACTAGCC # Right flank : CTAAGCAGCGAAGCGGGCAAAATTGTTCTGGAGAAGCGTAAGCGTTTGCCTTTATCCCCGGATTTTAACCCTTGATGGGTTTATACAATCCAGAAAATCCGGAGATAACAGCAATCGGAAGAACAATCTGCACGTGTAGCGTTCTAAGTACCGTCGAATCTTATTTTAAAATATAGAAGTATAATGAAAAAAATATTTACAAATCATGGGGCAAGGTCTATACTCTATATCAAGTCAGGAGGTGAATATAGTGTATTACGAAATTCATATAACAACGTTAATAAAACAATCATCTCATCATCTGGAGATACCGGAGCGTATCGGAGCGTGGATTGGTCGGGCTGGGTTGAAGGACGAAGCGTTGAAGCAGACGCACTACGACAAGGAATACAAGCACTATACATTCGGATCACCTTTTCCGCGTGAAAAGGCGGGGGTATACAAGCAAGGTCGTGTATACGTCATTACGATCCGCAGTTCCTTAGAGATTACGTTACGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 3 648389-647635 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000041.1 Paenibacillus peoriae KCTC 3763 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 648388 30 100.0 36 .............................. CATTATATTTAAGCTTGGCCCGTTTGTGCAAGTTAT 648322 30 100.0 37 .............................. TTGAGTATGCCAAGGCGACTAAGGGTAAGCAGCAGCT 648255 30 100.0 36 .............................. CAGGGACAGTAGGCAACAACAACTCAATCGGGCAAT 648189 30 100.0 37 .............................. TTTTAGAGGACAGTATGATTGATTTGGCGAATTTTGT 648122 30 100.0 37 .............................. CTATATTCAGCTTGGAAATGCCCGACTTGCAACTCTA 648055 30 100.0 35 .............................. TTCGATTAGCCTCCCAATTTCTTTAATTCAGCCGA 647990 30 100.0 35 .............................. GTTTATTTGCACCGACTGCGAGTGTTGGCAATGAA 647925 30 100.0 34 .............................. AGGGAATGAAATATAGAAAAAGGCCCTGGCATAA 647861 30 100.0 37 .............................. GGCGTCCGGACAATGACCGGGATACGGATACTTTGGA 647794 30 96.7 35 ................A............. AGGAAAATCACTAAACTATATGTCCGCTACCCTTT 647729 30 90.0 35 GC..............A............. AAATAGTCGATGACATGCGGTACGTCCAAGATAAA 647664 30 90.0 0 ........C.......C............C | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.1 36 CTTTAACCACAACATGTGATGTATTGAAAT # Left flank : TTATTGCGGAAATAGAACAACATAAATTAATCTTTTGTGCAGAAAATCTACCTGAATGGTCTAAAAATACATTGGCTTTATTTCAAGAATGAAATCGGATAGTGTACATCCAGCGATGTTCCATTGTCCGATTTTTGCTTTGTAAAAGGGCAGAAAGTCGATCGAAACTGGGATGCTACATTTATAGTTTAATTTTCAGCAATACTATAACTAAAATCATAAATTCCAATAAATTAAGGTATTTCATCGTGCGCGTAGGTAATTTCTTCTTATGCCTTACGTTTTATCCTTAGAAGCCATTTCGACAAAGCCGAAGGCCTAAATTTTTCCCAACCGCTTAAAAGGTATGAGACAGGGAATTACTTAGAGTGACAAGGGATTTAGACGCTTTCTCCACAATCAGAGGGCAGTGGCCTTACAGTTGGGAGAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTGCTAAAGGTGAAAATCTTGATTCTACTAGT # Right flank : ACCCCCCTTTTGAACACTACACGATAATTGCCAGCCATCCACTTAAATACGTTAACAATCGACAAAAATTCGGGAATTTTGATTGATATTTAGGAAGAAAACATATAAAATTGGATTAAAATGTAACCATGGAGGAATTGCGTGTGAAAGAATTTGACTTTGGTGAAGTAACAGATCTTGATTCCATTGTCGGAATGCTAAAAATGGCTTTTTCGCTTGAGGAATGGGAACAAATGATTCAAATTGCAGACCAACTGCACACTTAAGTTCATCAGGTATACGAACAACAGCAGTTGGAACGTACAAAAGGTGGACAGCCTAGAACTTTACATAGTGAAACGACCACTTGTATACTACTTAGGATTTAGTCAATTAACCAAAGGTATAGCTTTTCAAAAACAAGGTAAGTATGAGTTCTCTAGAGAGTGTGTTGAAAAATACGCCGAACTGGGTTGGGTAGACAGCCTGAATGAAGAGGGATTACAAGAGGTGGAAGACTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 650057-649631 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFX01000041.1 Paenibacillus peoriae KCTC 3763 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 650056 30 100.0 36 .............................. ATCGCTATAGTCCACATTACGTGCGGAACAATCTGC 649990 30 100.0 36 .............................. TTAATGAATTTAAAAGAATTTGGGGTTTACTTTGCA 649924 30 100.0 37 .............................. TGCATCGCGATGGCTGCCGGGTCGTGGTTAATTGCTA 649857 30 100.0 36 .............................. CAGGCACATACGCTGCGAATGAAAAGACGTTACTTG 649791 30 100.0 36 .............................. TCGGTAACGCCATCGGCTACGGCTCCATAATCCATA 649725 30 90.0 35 .........C.....GA............. ATGTATTGCTCAAACACGTCTTGCAAGGCTTCTTC 649660 30 90.0 0 .........C.....GA............. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.1 36 CTTTAACCAGAACATAGGATGTATTGAAAT # Left flank : ATGAAAATATCTAAGAGGAAAATTAGTTGAATGCTATGAAGTTGGTAACCAAATAGCCGAGATTATGAATAAAGATTAAAAAGACATCAAATGTTATGGTTTAAGTTCAACTTTTTTAGATCCAAAAAAAATTACAAATTTAAATACACGTAGTGTTAAAGTCAATGTATTTGAACTAGCAAATATATTTACCATTATACCTCCAATAAATCCATTACAATACAGAATAAAGGTCTATTTTGAGGACGGAATCCAATTTTAATGATAAAAAATCGTTGCCCTTGAAGTTACTTGAAATTTAAAAGATGAGATGCGAAGGGTTCACTTTTTCCCAACCTCTAAATGGAATGATACAGGGAATCACTTAGAGCCACAAGCCATTTAGGCGTTTTCCTCTGAAACTTAGAATAATGACTTGAGGTTGGGAAAAAATTGCGAAACCCTTGCGGCTGTAGTAAAATATGCTCATTGTTAAAAATGGAACCCTTGATTCTACTAGC # Right flank : TTGATTTTAGGCATCAATAAATATGCTAAAATAAGATTACTGCTGACTTGTAAGGAGGAAAGAGTATGCATACGAATAGAGAAGAACTTCAACGAATATTAAAACAAGCAAATGAATTTGCCCGTAAGCAAGCAAAGGAAGCAGGAGCTTCTATTTACTATATTAAAAATGGCAAGCGTGTACGCGAAGATGCTAACGGACAAAAGTATGAAATCGTCTTTGATACTTTGGGGATTCGTAAAGAGTATGAATTCCATGAATAGTTCCACACCTGCAATGACGATTTTTGCTGGAACTAATGGTGCAGGAAAAAGTACAATCAGCTTACAAATGAAAGATTGGATCGGAACTATCATTGATCCTGATCAAATTGCCAAACAATTAAAGCCGGAGAACCCTAGAGGTGCAGATTTATCTGCCGGGAGAGAAGCGGTAAGGCGAATAAGATCCTTAATTAAAAACAAGGACAACTTTGCCGTTGAGACTACTTTATCAGGTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCAGAACATAGGATGTATTGAAAT # Alternate repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //