Array 1 109868-107154 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBJ01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain BCW_2727 NODE_2_length_628699_cov_4.51989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109867 29 100.0 32 ............................. TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 109806 29 100.0 32 ............................. CGAATGGCTCAACTTTGAAGAGTTCAGGAAAG 109745 29 100.0 32 ............................. TGGATGATCCGTGCTTTGGCGGTGACGTGATC 109684 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 109623 29 100.0 32 ............................. GGCAGGGTATTGACCAGTCGATGCACTCTGCC 109562 29 100.0 32 ............................. TAACCTTACACCCGGTAAACAGGAACCCGTAA 109501 29 100.0 32 ............................. AGTGTTAGCCGCGCTGGCTGGAATGGCGCTGA 109440 29 100.0 32 ............................. ACTGCAAGGTCGTAGTCACGGCGAACACAGAA 109379 29 100.0 32 ............................. AATTTTGCGGCCTCACTGGAGGCCAGACGTGA 109318 29 100.0 32 ............................. CCGGTTAATCCGGCTTTTTTTGTGCCCTCGTC 109257 29 100.0 32 ............................. CCAATGCTGATCAGGCGTGGCTGGTGGGGCGT 109196 29 100.0 32 ............................. GGCGAGCAGCAGATAAACACCGAGAACCTGCA 109135 29 100.0 32 ............................. CCTCTGATTCTAGGGGGTACGAATATCACATA 109074 29 100.0 32 ............................. CGCAGCGATGGATTCACAGGTGCGTGAATTAA 109013 29 100.0 32 ............................. CGTATGCGTCGGCTGGAGCACCGCAAACACCA 108952 29 100.0 32 ............................. GCCGACCAGCGTCGCTGGGTAATGCATTCTGG 108891 29 100.0 32 ............................. TATGACGATACCAGATACCATCAACCCATTGA 108830 29 100.0 32 ............................. GCGTGGTTCCAATCAGAGCGTGAGCGACTTAA 108769 29 100.0 32 ............................. GGCGATGGCACAAAACGGTCAAAACTCATAAC 108708 29 100.0 32 ............................. GCGAACCTGCGCCAGCTTACGGCTGGATCGAA 108647 29 100.0 32 ............................. CCCATTATCGTCCTGCATCGCCGAGATTTCAC 108586 29 100.0 32 ............................. CGTTGGAATTTCTGAGTTCACCGGGCGAAAAA 108525 29 100.0 32 ............................. ATTACAGCGTTCACCGCGTTACCCTGGACGAT 108464 29 100.0 32 ............................. AATCTCCAATACAACGCGGATGTCTTCATCAG 108403 29 100.0 32 ............................. TTAGTCACAACGACTATGTTGGCAACGGAACA 108342 29 100.0 32 ............................. CATTGGTGTGCATCAGATTGTATGCCAGAAAC 108281 29 100.0 32 ............................. AAACGCACTCGCTACGATGAGTACCTTGATTC 108220 29 100.0 32 ............................. AAAAAAACATCATGGATACAACGCCGTTTTTA 108159 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAGCAGGGGAACGC 108098 29 100.0 32 ............................. GTTATGGTGCGGGTGGTTCTGGTGGTGGTTCT 108037 29 100.0 32 ............................. TGTTAACACGGTGTACAGGGGGCCACCGTGGA 107976 29 100.0 32 ............................. CGCCTCACCGGACCGCTGCCCTTTCCAGTTTT 107915 29 100.0 32 ............................. AGCGCATTCGCGAGCTGGACAAACGCCTGATT 107854 29 100.0 32 ............................. GTGAGGGTCAGCCGTTCTCGCAGCACGTCGAT 107793 29 100.0 32 ............................. CGGGTAAAAAAAAGCCCATGCGCTAACATGGG 107732 29 100.0 32 ............................. CCCGTTAAAGAGGACGTAGCCAAAAAGCTGGC 107671 29 100.0 32 ............................. AGATAATTTGAACAATTCAGTTTTCCCTGTTC 107610 29 100.0 32 ............................. GTTAAAAGAAAATAAATAGCGAGGAATATAAT 107549 29 100.0 32 ............................. CGTGCACCCGGCATTTTCTGGAACGTGGTCAT 107488 29 100.0 32 ............................. GCAAATATGTTGATCGGGATTCTGGCCGCACT 107427 29 100.0 32 ............................. GATTCGTCCATCTCACCGCGATCAATGCAGGC 107366 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 107305 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107244 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107183 29 89.7 0 A...........TT............... | A [107156] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129352-126577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBJ01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain BCW_2727 NODE_2_length_628699_cov_4.51989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129351 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 129290 29 96.6 32 ............................A TTAGCCAGCGCCGTGAGCACCTGATCTATCTC 129229 29 100.0 32 ............................. GATTCAGAATCTGAACGTTCAGAACCTGAACG 129168 29 100.0 32 ............................. TTAAGCGCAGTATGATCATAAGATGGAGTTGC 129107 29 100.0 32 ............................. GAATTGTTGTAATGGGAACTGGTTTAGCTATC 129046 29 100.0 32 ............................. AATCCCAACACGATGGCGGGTATCCAGCCCCC 128985 29 100.0 32 ............................. CAGCCAGCGCCGAAAACGTCTTCAATGGCGGC 128924 29 100.0 32 ............................. TTGCAGGGGTTCAATAATAAGGTGTCACGTTA 128863 29 100.0 32 ............................. CCATTAGCTAATTTTTTTAAAACGTCGCGGGG 128802 29 100.0 32 ............................. TTTCAGCACAGGATCAAATAATGGTTGTGTTT 128741 29 100.0 32 ............................. CGGGGGATGACACTCGCGGAGCTGAGAACCGC 128680 29 100.0 32 ............................. CGACTTTTTATGTTCGTTAATTATATTACAAT 128619 29 100.0 33 ............................. GGTTAATTAGGTGAATCAGTATCGTAATTCAGC 128557 29 100.0 32 ............................. CGCCGCTGGGGCTGGTGGCGGCAGGGTTCACA 128496 29 100.0 32 ............................. GGGGATTTTATGAGCAAGGAAGGGGACGTCAC 128435 29 100.0 32 ............................. GGCATAAAACTGCTGGTAATGGCGCGGCTCGC 128374 29 100.0 32 ............................. AGCATGAATTTCTCAACGTCTGCGCGCGAATT 128313 29 100.0 32 ............................. CAACCGCTTTTTGCGCGAGGGAATCGCCAGTG 128252 29 100.0 32 ............................. ATCATTACGTCACCCGGCTGAGGCTCGCTAAC 128191 29 100.0 32 ............................. TCAACTCTTAAATCATGGGCTAATGGTTATAG 128130 29 100.0 32 ............................. CATGGCCTGATTTCTGAATTACGTAAAACGTT 128069 29 96.6 32 ............................T GGCCCGGATGCGGTCGGACGAACCCGTCGCCC 128008 29 100.0 32 ............................. TCGCCAAATAGATCCCGGATAGATCGGGCTAT 127947 29 100.0 32 ............................. AAAACTCCATGGGAGATATGGAGCCTGTATTT 127886 29 100.0 32 ............................. GGACGTGCTCGTGGTCGTGGTCTCGGGCGTAT 127825 29 100.0 32 ............................. CCGGCGAACAACGACAAACAGAGGTTATTAAA 127764 29 100.0 32 ............................. TTTTGTGATGTGTGAGTTTAATGTATTGAAAT 127703 29 100.0 33 ............................. CATCGCGTTCAGAGTGAAGATAAATCCATTTAC 127641 29 100.0 32 ............................. CGGCACCCTGGCAGAATAAACACCGTGGAACA 127580 29 100.0 32 ............................. TAAACCGCTTTTTCCTGGCTGTTTAGCTTTGA 127519 29 100.0 32 ............................. AAAAGGACAAGCCAGATGTAAAAGCTGGTTAT 127458 29 100.0 32 ............................. CAGCCGGACACGGCATTGACTATGCGGCATCT 127397 29 100.0 32 ............................. CGCTTTTCTTTATCAAGAGATGATCCATTCGG 127336 29 100.0 32 ............................. GTAATCATTGAACAGAAATTCGCTGAGAGTAT 127275 29 100.0 32 ............................. TGCGGGACCTCAATCGACACGCCAGACGAGAT 127214 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 127153 29 100.0 32 ............................. AGCCGAACGAGGCACGACTAACTATCTGGGGT 127092 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 127031 29 100.0 32 ............................. GCGAGCGCAGGTATCGCAGGTGCGATGGCGAT 126970 29 100.0 32 ............................. AATCGAGCTATCACGAAGAACTGGAGAGCATA 126909 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 126848 29 96.6 32 ...........A................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 126787 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 126726 29 96.6 32 ...........................T. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 126665 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 126604 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATATGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //