Array 1 170691-170483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQET01000001.1 Pasteurella multocida strain 2668PM isolate swab isolate 2 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170690 28 100.0 32 ............................ AAAGTCAACTCAAAGTCAACTCAAAGTCAACT 170630 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 170570 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 170510 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96189-91299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQET01000029.1 Pasteurella multocida strain 2668PM isolate swab isolate 2 contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96188 28 100.0 32 ............................ CTAGTTGGTTGTTTGTTAATCTTTATGATAAG 96128 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96068 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96007 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 95947 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95887 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95827 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95767 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95707 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95647 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95587 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95527 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95467 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95407 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 95347 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95287 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95227 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95167 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95107 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95047 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 94987 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 94927 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94867 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94807 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94747 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94687 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94627 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94567 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94507 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94447 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94387 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94327 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94267 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94207 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94147 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94087 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94027 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 93967 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 93907 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93847 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93787 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93727 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93667 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93607 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93547 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93487 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93427 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93366 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93306 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93246 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93186 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93126 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93066 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93006 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 92946 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92886 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92826 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92766 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92706 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92646 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92586 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92526 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92466 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92406 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92346 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92286 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92226 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92166 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92105 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92045 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91985 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91925 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91865 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91805 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91745 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91685 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91625 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91565 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91505 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91445 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91385 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91325 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 82 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //