Array 1 124138-124948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011403.1 Ligilactobacillus salivarius str. Ren chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 124138 36 100.0 30 .................................... TAGAAGAAGTGAAAAACAATCTTACTAATT 124204 36 100.0 30 .................................... TGACGAAGCTCCTAATGACTACAAAGTTTT 124270 36 100.0 30 .................................... TTCAGGGACAGTATACGGACAAGGGTATCA 124336 36 100.0 30 .................................... AGCCCCAGGTTCCTAATAATCCAACAACAC 124402 36 100.0 30 .................................... TTCAGGGACAGTATACGGACAAGGGTATCA 124468 36 100.0 30 .................................... AGCAACTTTGACTAAACAAGTTATGCAATT 124534 36 100.0 30 .................................... TGACGAAGCTCCTAATGACTACAAAGTTTT 124600 36 100.0 30 .................................... TTCAGGGACAGTATACGGACAAGGGTATCA 124666 36 100.0 30 .................................... AGCAACTTTGACTAAACAAGTTATGCAATT 124732 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 124797 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 124913 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 12 36 96.8 35 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 772733-774024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011403.1 Ligilactobacillus salivarius str. Ren chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 772733 36 100.0 43 .................................... AAAGAATGGTTTTTTTGCATCCTTTGCCGGTTGCTTTAATTGA 772812 36 100.0 39 .................................... TTAGCTGAGAAATTACTGGAGAAAGATCCAGTATTGGCT 772887 36 100.0 38 .................................... TACTACTGAATTTCCATTGCCGTCTTTTGTTACTTTGA 772961 36 100.0 38 .................................... TACTTTGACTGCAAATACCGTATCATGGATTTTGCTTT 773035 36 100.0 38 .................................... ATCAAGCCATTATTCATAACTACATGTAGATGTGGTGG 773109 36 100.0 34 .................................... CAGCTAAACCAAAAATTTTTTCAATCATGATAAT 773179 36 100.0 35 .................................... TTTGCATTTTAATTAATTGATTCATGTTTACTTCC 773250 36 100.0 35 .................................... ATGAATTTTGATAACAGTAAGGAAGAAGATATAGA 773321 36 100.0 35 .................................... TCTTACTCATTTCAATCGCTCCTTTTAGTTTTGCA 773392 36 100.0 35 .................................... TTTAGTGAATTCTATTTCCATTTTTTATTTCTCCT 773463 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 773536 36 100.0 39 .................................... GATTTATTTAGTTTTAAAAAGAACTGTTTTTGTACCGCC 773611 36 100.0 37 .................................... GACTTGATCGAACAACTTTATTAAATCATAAGCACTT 773684 36 100.0 37 .................................... ACGACAGCCTAATACCAGAGCTACTCCTTTCATTTAA 773757 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 773835 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 773912 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 773988 35 88.9 0 ............................-....TCT | TT [774018] ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 99.1 38 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //