Array 1 5793-1616 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQC01000023.1 Rothia nasimurium strain irhom_31 NODE_23_length_44183_cov_22.4305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5792 29 96.6 32 ............................T TCTCTCCATTTCCCCATCGAACGCTTCTAAGA 5731 29 100.0 32 ............................. GCCGGAGTCTGCCGGGTCTTTGCCGTCACCAA 5670 29 100.0 32 ............................. CTGCGCCTCTGCCTGCTCGGCGCGCTCCTCAG 5609 29 100.0 33 ............................. GGTAAGCCTGTGTGGACTCGGGAGCATTTGGTG 5547 29 100.0 32 ............................. GTCTCCTCACTGGTATGGGCCGAGGCTAAACG 5486 29 100.0 32 ............................. GAATTAACCGCGTCACGCATGTGCTGTTGGTC 5425 29 100.0 32 ............................. AGCTAGCACCCTTTGAGTGTGCCAGCACAGCA 5364 29 100.0 32 ............................. ACCACGGGTACGTTTACGCGATACAGAGCTAA 5303 29 100.0 32 ............................. CGGTGCTTACTCTTATCTACTGAGATAGTGGG 5242 29 100.0 32 ............................. TCAGGGACGGCCGGTGTAGCGGGGGCGGTGTT 5181 29 100.0 32 ............................. CCGTCACCGGCGCCTACATCACCACCACCGGG 5120 29 100.0 32 ............................. GGCAACGGCCCCAAGCGCCGCTGGCAGCTCCT 5059 29 100.0 32 ............................. CGCGAATCTCTAGCGATTATCAGCAACGCAAT 4998 29 100.0 32 ............................. TACACCCCATTAATAACGCGCACGCACACGAA 4937 29 100.0 32 ............................. TGCAAAAGCTCAGCGCACCCCCGAGCGGTGGG 4876 29 100.0 32 ............................. TGCCCAAAATAGTCTTTGAAGACCTCTTCAAG 4815 29 96.6 32 ............................G CAACGCAAGCGATAATCCAACCAACCTGTTTC 4754 29 100.0 32 ............................. GCCATAAAGCCACCATCAGCACCTGGACAAAA 4693 29 100.0 32 ............................. CCCTGGCCGCCACAGTCAAACCCGCAGACTCA 4632 29 100.0 32 ............................. GTTACCGCTGGACTCTACCGCTTCCTTTGAAA 4571 29 100.0 32 ............................. TTCCGCTGTGAACTGAGCGCCTTAGATTGACT 4510 29 96.6 32 ............................T GCCGTGAACGGTTCCGTTAAACCAGTTTCCGT 4449 29 100.0 32 ............................. CGGCGGCTCCTATGAGGTGGGCACGAATTTTC 4388 29 96.6 32 ............................T TCGGCGGCTTCATCGTCGATTGCTACCTGCTT 4327 29 100.0 32 ............................. CAGGAGCGTTGAAGCAGATCCATGGTTTTCTT 4266 29 100.0 32 ............................. CAATGTCAGTTCACCTCCGTGAGCGTCAAAGA 4205 29 100.0 32 ............................. GGTAAGCCTGTGTGGACTCGGGAGCATTTGGT 4144 29 96.6 32 ............................T TCGCTCCCTACCTTCGACGTCCTCGCCGAACG 4083 29 100.0 32 ............................. CCCTGCAAGGAAGCCGTCGTGTACGAGGACGC 4022 29 100.0 32 ............................. GCCTACGCAGGCGGCTTCGGGGCACCCCAAGG 3961 29 100.0 32 ............................. GTCGTATGCGGATTCGTCGGGGTCGGCGGTGG 3900 29 100.0 32 ............................. CGGTACACGGTCGATGATACGGGGCCGTACCA 3839 29 100.0 32 ............................. CGTGAACCGTTCAGTGTTGGCTACTTATTCGG 3778 29 100.0 32 ............................. GGCCTCTACGAAATCGTGATCTCCAAGGAAGA 3717 29 96.6 32 ............................T CCTGTGTATGTCCAGGCTTCCATGATTGACCA 3656 29 100.0 32 ............................. GAGTGGAAGAAGAACGGCTACTTGATTCGCTC 3595 29 100.0 32 ............................. GTACGAAACAGGTGACGCCATGAAAGTGCGAA 3534 29 100.0 32 ............................. CCTGCTGGTGGTGCTTTTTCCCCGCGTCTGCG 3473 29 100.0 32 ............................. TGGAAACCATGACCCAGCAAGTGAACAAGCAG 3412 29 100.0 32 ............................. CACCTTATGAACACCACCACCAGCACCGCACC 3351 29 100.0 32 ............................. CACAAAAACCAGGGCATCAGCGACCGGCACAA 3290 29 100.0 32 ............................. CGCTCTTCTACCGGCAGGGTAGTAGTATTTCC 3229 29 100.0 32 ............................. GAGGGGTACGGCGATACCTACCTGACCATCAC 3168 29 100.0 32 ............................. AGGGCGTGGTGCATTTATAGTGCGATTTCACC 3107 29 100.0 32 ............................. GACTCCGAAACTGTCAAAGTCGAGATAGACAT 3046 29 96.6 32 ............................T CTCACAAAGGAGAAACCAGAAAATGAGTGAAG 2985 29 100.0 32 ............................. AGGAAATGGTCAGGGCTGATGACACTCACGGC 2924 29 100.0 32 ............................. CGTAGGGGCAACCCACAGACGCGTCCCATCTA 2863 29 100.0 32 ............................. GGATTCTGCAGTAACAGGTGTCCCTGATGATG 2802 29 100.0 32 ............................. CAGCCGGTGGTGACAGTGAAGCTGAAGAGGGT 2741 29 100.0 32 ............................. CGCATGAGCAAAACATCTTGAGCGAAAGGATG 2680 29 100.0 32 ............................. AACCATTCCTTTGAGCTTTTCACCGGATTCAG 2619 29 96.6 32 ............................G CCGAGTGCACTGCTCTACGCTCTGGGTACGAA 2558 29 100.0 32 ............................. CACACCAGCAGAGCCCACATAATGCCGCTCAG 2497 29 100.0 32 ............................. GAAGGGGCCTGGCTGACCGTAGATGTCACCGC 2436 29 96.6 32 ............................T ATCGGGGGCCGCCTCAGCGGTAGCCCAGGTTG 2375 29 96.6 32 ............................T ACTGCTGGGTACGCTGCTCTTGCCTCATCGTA 2314 29 100.0 32 ............................. ATCAAGGGCCGCGTTCACCGCTGTTTGTGCCA 2253 29 100.0 32 ............................. GACATGGTTTTCCCCGAATTTCACGCCTGCCG 2192 29 100.0 32 ............................. ACTTCCCGGTTGGCGTCCTCACTAAACTTTTC 2131 29 96.6 32 ............................T GGTGAAGGGAGACCCCGCCGGGCGGCGCCGTT 2070 29 100.0 32 ............................. CGCATGAGCAAAACATCTTGAGCGAAAGGATG 2009 29 100.0 31 ............................. CCTACAAGGTAGGAGCTGCGTACCCTGGCAT 1949 29 100.0 32 ............................. GCCCTGGTCTCGGAAATTCGCAAAACCAACGG 1888 29 100.0 32 ............................. GGCACCGGCTTGGTGAAAATAGCAGCCTTATA 1827 29 100.0 32 ............................. CTTGATTGTTGGTAAGAGTCAGCTGGCTAAGC 1766 29 96.6 32 ............................G CCGGTGACGGCACCCACGCCCACCCCACCCAG 1705 29 100.0 32 ............................. CTTCGAGCTATTCGACGAATACACCATAGCCC 1644 29 86.2 0 ........T.T...........C.....A | ========== ====== ====== ====== ============================= ================================= ================== 69 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAGCCC # Left flank : CTGGGCCCGGTAAAACTACAGTAGAAGCAGGCATCAACTATGCAGGTGATGGTAGTTGATTGTTTTAGTTGTGACTGCGTGCCCAGAGGGATTACGCGGAGACCTGACGCGGTGGCTATTAGAGATTAGTCCTGGAACATTTGTAGGCAATGTTTCGGCAAAAGTTCGCGAGGCTCTCTGGGAACGAACTTGCTTATATGCTGGGAGCGGTAGAGCAATTCTGGTGTACTCTTCGGACAGTGAACAGCGTCTTCGTTTCAAGGTGCATAAACACGACTGGGAACCTGTCGACCTGGAAGGGTTAACATTGATGATGAGACCTTTACCTGGTTCCCCTGCGAAATCGAAACGTACCACGGGGTGGAGTAAAGCGCGAGCACAAGTGCGTAGTCGCAATCCCCCGTGGCGGACTAAGATGTAGTTAATGATTTCCTGACGATAAGTCACTCATACTGATTGGATTTAACCTTTGGCTCAGGTAAATATCCTTGTCAGGAAGT # Right flank : CAGTGTCCGGTGCAAGTTTAGTCATTAGCCTTTTCCATGTATAGCTCCTGTTCTAAACTGGTAGGAGAGGGTGGGGGCTTCTGTCCCACCCGGTGCAGGTTCAGCTGTTTCTTTTTGCTGTTCCTCTTCTTGCTGGTGGCCTTATGTGCTTTGCGGGCTGTGAGGCTACCGGCAGTGATTTCTATAGCTGAGAGTGGTCCCCTCGCATGTGCGCGGGGAGCGATGCGGCGCCTGTGCCGGCTCCCCTCCCCGCTGCGTCCTGTGCATGTTCGGGGGAGTGCACCTTTGGTGCCCTTGTAGGGTAGGGGTTCGGTATGGGCGTTTCCTGCAGACGTATAAATACTAGGGCCTACCGGGCCCGCCACGCCCCACCCCAAAAAACTTCACGAGTAAAGTATTCCCTTTTTTCTCCAGTACACTAAACCCATGAAACTCATTGAGCCTCGCCCCGTCCCGCTCGGCGGGTTGCGCGCCATGACCGTGCGCCGCCTGTTGCCCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86804-85859 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPQC01000005.1 Rothia nasimurium strain irhom_31 NODE_5_length_88924_cov_15.4131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 86803 28 100.0 34 ............................ CGTCGCCCTGCATGACGACACCGCCCGCTACATG 86741 28 100.0 33 ............................ CCACTGCTCGGGCTTCATGCCTAGGTCTGCCAG 86680 28 100.0 33 ............................ TGGCGTCACGGATTTCTGAAATAATCCCTGCGA 86619 28 100.0 33 ............................ CTACTTCCCCCGTTTCGGAGTTTGAGCTTGCCA 86558 28 100.0 33 ............................ CGGCCCTGCGGTGATGTCCATGCTCTCCGGTGA 86497 28 100.0 33 ............................ CCAGCAACAGCGGTTCCAATACCGAAGCATCGA 86436 28 100.0 34 ............................ CTGGTGAAGTTGTTGACTTGGGCATCGATTCTCC 86374 28 100.0 33 ............................ CGGCTAGCAAGTCCCGCCGCACCAAGGCAGATA 86313 28 100.0 33 ............................ TCAGCCCCGCCGACTAGGTGTTTTCCCTAGTGG 86252 28 100.0 33 ............................ TACCGTCCTCTTTTCAAACCACACCGGCTACGG 86191 28 100.0 33 ............................ TCCGGCTAATGGCCTCTACGCTCATGCCATAGG 86130 28 100.0 33 ............................ TGGAATAGTCAAGAGGCACGGGAAGTAGTCAAG 86069 28 100.0 33 ............................ AAGCCCGGTTGCCCCTGCTTATAAGACTTCCGA 86008 28 100.0 33 ............................ TTCGGCGGTGGGGATGAGTTCGTGCAGTTTCTC 85947 28 100.0 33 ............................ CGGATGGATGTAACCATGACTAAGGAATTTGCT 85886 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 16 28 100.0 33 GTGATTCCCGTACATGCGGGGGTGGTTC # Left flank : GGAAGAACGTGGCTGCTAAATCGGGGCTGAATCGGAATATCTTAGATGTGAGTTTTGGACAGATTAGAAACCAGCTTGAGTATAAAACCAAGATGTACGGTTCTGCTCTCACTGTCATTGGCAGATATGAGCCAACCTCAAAGCGCTGCTCACAGTGTGGTGCTATGAAATCTGACCTATCGCTTAAAGAGAGAACTTATATTTGTGTTGAGTGTAATTATCAAGATGATCGTGATATTAATGCGGCAAAAAATATAAGAAACCTTGCTGAGAAAGAGCTGGGCATGGTATCGTCAATCTCGTCATAATTGACAAGCTCGCCTGCGAACGAGGGAGAGTGTAAACGGCCGTTGCGGATGCGTCTCAAAACGAGGCAAGTCCCGCCTGAACAGCACCGGCAAGCCTAACCCCGTAAAGACGGGTACCGGTACATTGGGGTGGAAACGCCCCTTCTGCCCCGAAAATAAGTTAATACGAGGAAAAATGCCTAGTCACTTAGG # Right flank : CCGTGGACCTCAGGCTTACTCTGGCCGGAACTCTCGATATAGGGCAGGTTCCCCAAATCCAGTTAGGGGCCCGGGCTGTGCTCGTTACCGCAGCCTACGGCTACGACGAGGTGCAAGCCCCTGAACAGGTGCTCACCCGCCTCTAAGAGACAAGCGGACGCCCGCCCTATCTGGGGCGGGCGTCCGCTGATAAAAATCTAGTGAGTCGGGCTAAGGCAGCTGCCCCACCGCCGCCTTCAGCGCGTCTTTCACAGCCCTAATGGCGGGCTGGCCTGTGCTTTCGGTGCGGGTAGCCACATAAATCTCGCGGAAGGGGGCACCGGGCAATGGAATAGCCTTCACCCCGTGTGCCCGACTCAGCTCGTTGACGGCAGCGGGCAGGGCAAAGGACGGCATAATAGCCGCCGCCCCACCTGCCGCCAGCTGCAAATGTGTGTTCAAATCATCAATCACGTAGCGCACCTGCGGCTCATACCCCGCCGCCCGGCACTGGTTGATAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCCCGTACATGCGGGGGTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //