Array 1 1056-548 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLSC01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07682 WH-SGI-V-07682_contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1055 28 96.4 32 .G.......................... AGGATGTCGCAGTCCATCAGCCGCTTGATCCC 995 28 100.0 32 ............................ GCCATAAAGGATTAGGTAGCGCCCGACATGCC 935 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 875 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 815 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 755 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 695 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 635 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 575 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TCGGACTCAGGCGGACTTGCGCCAGGCTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAGACGGCAGTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGGTGAAGCAACTGTGTCGCCGACACGGCTTCAGTGATGCCTCGTTCTACACCTGGCGGGCCAAGTTTGGCGGTATGACCGTGGCGGACGCCAAACGGTTGAAGGATCTTGAACTGGAAAACAGCCGATTGAAGAAGTTGCTCGCCGAGGCCCACCTCGACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGGAGGCGGTGCAGGAGATGCAGGCGCGAACCGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGCTACCAGCCGCGAGCCCGTGTGCAAAACACCGAGCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136-710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLSC01000047.1 Pseudomonas aeruginosa strain WH-SGI-V-07682 WH-SGI-V-07682_contig46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 196 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 256 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 316 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 376 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 437 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 497 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 557 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 617 27 96.4 33 ........................-... ATGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [629] 683 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAGCTGGGGGCAGGTCACAGGTCAAGGCCATGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10465-9234 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLSC01000047.1 Pseudomonas aeruginosa strain WH-SGI-V-07682 WH-SGI-V-07682_contig46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10464 28 100.0 32 ............................ ATATCGTTACCACCTTGCCGAGGATCGAGAGC 10404 28 100.0 33 ............................ TGCACCAGACCGCCACCAAGCTGCACGCTGCGT 10343 28 100.0 32 ............................ AGCAGGCGCCATGCGCGGGTCCGGCGGTGGCC 10283 28 100.0 32 ............................ TGTACAAAGGCGTTTACCGCAGAGTTGATTCC 10223 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 10163 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 10103 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 10043 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 9983 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 9923 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 9863 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 9802 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 9742 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 9682 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 9622 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 9562 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 9502 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 9442 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 9382 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 9321 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 9261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //