Array 1 20361-18381 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGI01000051.1 Lactobacillus hamsteri DSM 5661 = JCM 6256 strain DSM 5661 NODE_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20360 29 100.0 32 ............................. ATCTTCAGCTGGTACGTCTTTAGCAATTTCTG 20299 29 100.0 32 ............................. GTATAGAAACCTAGTTAAATTGTGTAAGGAGG 20238 29 100.0 32 ............................. GGAACTACCCCCTAGTTCCGACAGGAACCGAG 20177 29 100.0 32 ............................. ATTGCGATCAAAATTCAAGTTGGTATCACCCT 20116 29 96.6 32 ............................C ATGCAAAAGAAGCCGGAGTATCAAAACGAGAA 20055 29 100.0 32 ............................. AAGTTGACCAGTAAAACTCAAACTGATCTTAA 19994 29 100.0 32 ............................. GATTTAATGCCTGCAAGTGCAGATCTGGTAAA 19933 29 100.0 32 ............................. GATGCCGTCTAGCCATTCTTGTGCGTCATGCA 19872 29 100.0 32 ............................. GTTTAAAGCCACATTAATGAACTTCACCAAGC 19811 29 100.0 32 ............................. AGTAATGGCACCAGATTGAATAGTTACAAATT 19750 29 100.0 32 ............................. TTCGATTGCCCCAACTGGAGTTTTGACCAGAT 19689 29 100.0 32 ............................. GGCTAATGAATTATGCCTTAGATCATAAAATA 19628 29 100.0 32 ............................. GAAGCTATCGTACTTCAACAGTTAAATTACTG 19567 29 100.0 32 ............................. AATAATTGTATTTGTCATACCATTCTTTTCCT 19506 29 100.0 32 ............................. AGGGAGAAAGAAATGGCTAAAAAGGAAAATAA 19445 29 100.0 32 ............................. ATACTAAGTGAAGTCAATGAGGGAGGTAAAAA 19384 29 100.0 32 ............................. AAGCAGACCACGAAACTTTAGAATCATTGGTT 19323 29 100.0 32 ............................. GTAATGCTATATGAAGACCAAACATTAGATAA 19262 29 100.0 32 ............................. TGACTTCAAATGAAACATACGATGGAGATCTA 19201 29 96.6 32 ............................C GTCTTTCATTTGAGCTTCTTTTGAGCCACTAG 19140 29 100.0 32 ............................. ACTGCTGATTCTCACGAATGCAAACGATATTG 19079 29 100.0 32 ............................. GAAACCTAAAGCCTTGTTTGCTGACTCGGTGG 19018 29 100.0 32 ............................. CGTATGTATCGCCAGTTTCACCAGATAGCCAG 18957 29 96.6 32 ............................C CTGAAGAACTGACACGACTTCTAGTGCCTTCA 18896 29 100.0 32 ............................. CGGTGGTTTTTTACAGAAATTGTTCCAATATA 18835 29 100.0 32 ............................. TATCATTAATAGTAATTGGCGGAATAAATCTG 18774 29 100.0 32 ............................. TTGTTGCAATTCAATATTTCTTTGTTTTAAGT 18713 29 100.0 32 ............................. TTATAAAATACTGTATAAGCGAAAATGATTAA 18652 29 100.0 32 ............................. TATCATTGTCACGATCTAAAATAACGCAGATC 18591 29 96.6 31 ............................C AAATTAGGGGGATCCTCAAGGATGGCGCTAC 18531 29 100.0 32 ............................. TATCGATTTATTTAGCTTCAGACCGCAAAACG 18470 29 93.1 32 ............TG............... ATTGATTAATTGCATCTTTATGACGCTGTGAT 18409 29 72.4 0 ....................AACA.AGAA | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.5 32 GTATTCTCCACGCATGTGGAGGTGATCCT # Left flank : CCAGCGAAGGATAAGATTATTTCTATTGGAGCTGTAAAAAGATCAAATTCAGAATGGAAAACTTTTTATAAGTTGGTGTCTAGTAATGTAAAAATACCTGATAATATTTGTGATTTAACTGGTATATCTTCTGAAGATATAAGGGAAAAAGGTCATTCATTAGCTTCAGTTTTTAATGAACTAAAATCTTTTGTTGGTAATTCAAGAGTTGTTGGTTACAATTTCTCATTTGATATGAGTTTTTTATTAAATGTTTTCAATGATTTAAATATTCCTAATTTTATTAATAGTCCTAGAGATTTAATGTCTATTGTTAAAAGACATAATCAATTTTTAGATAATTATAGATTGAGTACAGTGCTCAAATATTATAATATTGTTAATGAACACCCGCATAATTCTTTGAGTGATGCTAAGGCGGAATATTTGTTAGCTGAGAAACTGAATAAAAACGGTAGTTTTAAAATTTAAAAAGCTTGGTATTATGGGATTTTTTTAGT # Right flank : GCTGCCTTTATAGATAGCTTCTTTTTTATTCCATGGAAAGTGCTATAATAAAAGCCGTTTTGCAAGTGAGGATAGAAAGAAGCGATTGCCCATGGATAAAGTTCTGAGTCAAGATGAGCTTGATAAGAGAGAAAAAGTTGACCACATCATGTTTCATTTAAGTGAAGCCAAGGATGAAGAAGACAAAAAGCAGCGTATTTTGCAGGCTGGCCAATACCTAAAGGAATTAGGCAGGGTAGGTGAGAATGCAAGCATTGGTGAGATTTTCGATGTGTACAATGCTGATCTTCTGAAGCGGATTCGCAAGGTGATCAAGAAAAGTGAAGAAAAGGCTGCTCGCGCTCCTGAGCCTAACTTACATAGCAAGAAGCTTGTGGTAAAAGGTGCCGATGATACTTTATACTTTGATGAATACGGCAACTGCTTATTGGAAGGCTCACTGGGAATGCGCATGATGGCTGACGAAGGCGTCGAATTTATGTACAGCAATTATCTTCGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGCATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31741-31034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGI01000051.1 Lactobacillus hamsteri DSM 5661 = JCM 6256 strain DSM 5661 NODE_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 31740 29 100.0 32 ............................. GCACTTGCAATATTTTCAATAGTACCAGGGCT 31679 29 96.6 32 ............................A ACTTCGTATCTCTACGAATTGCGCTAGATGTC 31618 29 96.6 38 ............................C AAGTGCAAGCGCAAGCTTAACTCAATCAACGTGACGAA 31551 29 96.6 32 ............................A TGCCTGCTTGATAGTACAAGTCATAAATTTTG 31490 29 100.0 32 ............................. AATTTGGCTTTTAAACAATGGTTTGAACATGT 31429 29 96.6 32 ............................A GGTAATATGAGTTTTAATGGAGTTTCTATTGA 31368 29 96.6 32 ............................C TGATCCATCTTTGTGATAATCAATCCAACTTG 31307 29 100.0 32 ............................. TGTGGGTATGAAGTTCTGTCATTCCATGAAAA 31246 29 100.0 32 ............................. AATGTTGGTGGTGGCAGACAAAGTAGCACTAA 31185 29 93.1 32 ............C.A.............. CTTTCAAAATCACCAAACTGGTAAGTAAGCTT 31124 29 89.7 32 ............C.A.............C GCCACCGAAGCTTATAAAAAGGCTCATTCAAC 31063 29 82.8 0 ............C........C.T..TT. | T [31037] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 95.7 33 GTATTCTCCACGGATGTGGAGGTGATCCT # Left flank : TGTAATCTTGTGCCATAAAAATAGCGTCAGCAATATCTTTACCTTCAGTCGTTCCATCTAAGTCAGGAATATTTACTAAGTATGGGTATTTAGCATCCTCATTGTTTTTACTAATAATTATAGGAAAAACCACGGTCTTATCAATTGATGTCATCATAAAATTCCTCCTGTATATCATTAAGAATAACATATTATTTTATTAAAAGAGATGAAAAGAAACAGAACCTAGCAACTGATAAGACTTAGTGAGGATAAACGCCCAATGCCCCGGACTGAAGTTTATAATTTCTAAAATAGCCGATATGTTGACCGAAATTAAAGAAAAATTCTCTATCTTTTTATTAATATTGATTTTGGTTTCGGCTGAGGTAATCTTTGAATCATTGTTGGTATTATATTTTTAATTATATGTAAAATTTACTCTATATTTTTTTGATGAAACTGAATGAAAAAGTGATTTTCGTAAAGTACGAACCTTGGTATAATAGGATTTGTTAAGT # Right flank : TATATATAGTTTTCTACATTAAAAAAGGAATTATTATGTACAATTTATCAGAAAAAGCATTAAATCTTTGGGGCAAAAAGAATATTAATGATGATCATGAAGAACTATGGTTGCCCCTAATCGTTCACCTTATCGATACCAAAAACGTAATCAATTGGCTTTATAATCACTGGCTAGATCAAGGACAACGCAATATCTTATGTCAAAATTTTGAAAGTGAAGAAGAAGTTCAAAACTTAGTTAAATTCGTGGGTTATATTCATGATATTGGCAAGGCTACTCCTGCTTTTCAAACAAAAAGGTCTTATATTCATGATGAAAATCTTGATACGGATTTGTTGGAAAGATTAATTAGAGCTGGTTTTAATAATCTAGACCATTTTGCTTCAGTAAGTGCCAAAGAATCGCCTCATAATATAGCTGGTGAAGTGATACTAGAAAAGCGTGGCCTTAATAAGTGTATTGGCGCAATTATTGGTGGACACCATGGTAAGCCGGTG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGGATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //