Array 1 291212-292180 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS999944.1 Lachnoclostridium pacaense strain Marseille-P3100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 291212 33 100.0 33 ................................. GTGATATCCAGGGAAATCCATGCATTATAAATC 291278 33 100.0 34 ................................. AACCTTAAACAGACATCAGAGGCGGCATGGTTAC 291345 33 100.0 33 ................................. CTGATACAGTTCCTCCCCATTGGACTTACTGAG 291411 33 100.0 35 ................................. TTTTATCTAAATTGCTACTTATGTCGTTTGCCTTT 291479 33 100.0 34 ................................. AAATGTGGTTTACATCCCGGTTCCGGTCATTTTA 291546 33 100.0 34 ................................. CGGTAATGTTCCGGCACCGGGTATCCCGTGACCT 291613 33 100.0 33 ................................. TGTGCCTAATGTACAAATTGTACGTCATTTAGT 291679 33 100.0 33 ................................. ATGTTGAATGTTGCGGTATAGGTCCTGTCATTA 291745 33 100.0 34 ................................. CGTCATAGGTGTAGAGATTTTGTCCGTAATTACA 291812 33 100.0 35 ................................. TCCTTGATAGGTTCAGAAGGATTTCTTGCCTCCTC 291880 33 100.0 33 ................................. ACAATAATCGGCTGCTTGCTTCCACCAAAGGAA 291946 33 100.0 35 ................................. TGGCAGATGGCGTATGGTTCGGATGGCAGCACAAA 292014 33 100.0 34 ................................. ACATTAAACGGAGGTGCTTTTGAGTGAGTTTAAA 292081 33 100.0 34 ................................. AAAACTTGTGTTGATATTTGCCTGGTCAAGAATT 292148 33 78.8 0 ............A.T....A.A.AA...A.... | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.6 34 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : TGATATCCTTTTCATATAATGCTGTACTGAGGGAATGGAAGAAGATGGTTATGATGGGTTTAGAAGGTAATGTGGAAAATGCAGGATAAGGGAATTTGATTGCAGCAGGAGTGGGGGATTGTTGACTACATCAGTTTTTGGAGTGAATTAAGATGGTGAGTTGTGAGAATCGTAGAAATCTACTTATTTTTTAAAGCTGACTTGGTTTTCTTTGAAATCAGATTAGCTTTTCTTTTGTGGAAAAATTTTGTATAATGTTATACAAAATGGAGTTATTGTTTTATTGGAGAATAGAGAAGGAGTGGATGCAGAGGGTATGAATGTCAGGAAGCAGGTGATGGTGCGAATTATGAGTGCACATAAAATTCCTGGGGGATTCGCACCAATAAGGCAGGGCGGAAATTGAGGTTTTCTTAAAAAAAGAGAAGTTGTAAGAGGAATGTTATGCATTGTATATAATAATGTTTGTTGGAATTTTGTTTATGTTGGGTATTATTGCA # Right flank : TCCATCCCAAGCTGTAAAGACTAAGAAAAAGCCAGAATCATCCCAATTAAGACAAATTAAAAAACACCTCCATTCCCCACAGCATATGAAACAGGCTTGTGGAGGATGGAGGCATTTTCATTCTATAAAGGTATCTCCCGCTGGGATTTTAATGGTGACCAGGGTGCCATCGTCAATGTTATAGTGAATGGAAGCGGCGCCCTTATAATATAATTGCAGTCTTTGGTAAACGTTCCTGATGCCGAAACCGAAGGATTCACTGTCATGTGCAAAACCGGAGTTTACCGCTTCCGCCAGGCTGGGTTTGAGAGGAAAACCGTTATTAAAGATTTGGAATATCAAAAATCCGTTTACCAAGGTGCAGGTGATATGGATGTATCCTTGCTTGGGGTAGCCGCGGATGCCATGCAGGACCGCATTTTCAACAATGGGCTGGAGGATGATTTTTATGATGGAATATGTAAGGCATTCCGGCTGGCATTTGATTGTATAGAGGAAGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 302380-303546 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS999944.1 Lachnoclostridium pacaense strain Marseille-P3100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 302380 33 100.0 33 ................................. TCATAGATTAGGGTTACCGTTGCTACGATTTTC 302446 33 100.0 33 ................................. AGTGCATTTGTGACTTTACTGTGTCTAATAGGG 302512 33 100.0 34 ................................. CTCCTTAATCCTCTACGACAAGATATAGATTGCC 302579 33 100.0 33 ................................. TCCAGTTCCAGTTGCGACAGCTGCTGCTCCTGT 302645 33 100.0 34 ................................. ATACGTCCCATCAAGATTCCAGCTTCCATCCAGT 302712 33 100.0 34 ................................. AGATTATTATGAGCAGAATGGAAGTGAAACAGCG 302779 33 100.0 35 ................................. GTCTTGGTTCTTGCAGATGGGACTAAGCAGAAAGT 302847 33 93.9 34 ..T......T....................... ATCATGCACTTTTTGTCCTTGGTGGGTACATAAC 302914 33 97.0 33 .........T....................... TGTCCCCGAACCCTCGTCAGCACCCTTTGGTCC 302980 33 97.0 34 .........T....................... ATGTACGTTCCACAATTATTACACTTCATGCTGC 303047 33 100.0 34 ................................. TGTGGGAAGTACATGGGTGCCCCATCCAATGCGT 303114 33 97.0 33 .........T....................... GCTATCCTCTTATCTGAACTGTAATCCTCTTCC 303180 33 97.0 34 .........T....................... CAAAATCTTATGTCATTTATCAATCAAAAAAGGT 303247 33 93.9 34 .........T.......T............... AGCCTATGAAGTTCGCTGATTTTCTCCCGGTATG 303314 33 93.9 33 .........T.......T............... TGTATAATTGCATCATATAGAGTGGTGCTAAAT 303380 33 93.9 34 .........T.A..................... AGCATAGCTGGGCTGGTATCCAGGCCCCTGATTT 303447 33 97.0 35 .........T....................... CCTGGCCCCGTGGAACATGCTGCTGGCTGGCATGA 303515 32 75.8 0 .........T..........-.AT....TT.TC | ========== ====== ====== ====== ================================= =================================== ================== 18 33 96.5 34 GTCACAGCCAGCGAGGGCTGTGTGGATTGAAAT # Left flank : TTTACGGATGGGGCAAAGTATGATTCCGGGATAGGCAGAACATTCCCACAGGCTGAACTTCTTCTCCCGGAACAGCTGGATGAAAGACTGTTAATGGGGCTAAAAGAAGCGTTTTATCGGTTAGATCCGGATGGGACTTTGTTTATATAAAGCATATGACAGGCATATGTAGACTGGATTATGCATATGTCGTGTATGAGTCAGTGTTGGACTTTTCTTTTGTGGAAAAACCTTGTATAATATTTGTATGGAAATAGGTTTATTCTCAGCGGAAATGGGAAATTTTGGTATTCGGGAGTCGATGAAGAGGATATATAAATGTTAGAAAGCAAATGATGGTGCGAATCCTAAGTGAACATAAAATTACTGGGGGATTCGCACCCGGAATAGTAGGGTGGAAATTGAGGCGTTCTTTATTTTCATGAGAATTTGGAAATGGACTTTATGAATTATATGTAATAATGTTTGTTGGTATGAGGATTTTGTTGAGCATAATTGCT # Right flank : CTTGCAAAGACCGAAAATCACGTATTTGTTCGAAAGATGTTTTAAATGAAAAATTTTTCATATTCAGGAGTAAACGGTGTAGAAAAATCAGTATTATACAGGACTCCACATAATCATGATATCGGCAATAAAAAGATGATATATGCATTGTATCACAAAGCAAATCCCTTAAGGGCCGTAGCTCTTAAGGGATTCTTTTCCGCAGGAAAACAGTTAGGGCTAACACTTGTTAATTCCTTTCTGCACCTACACCTGCCAATATAAAACAATAACCAAAAACAAATCCTACCCTTCTAAGAAAAACAATTTTAAAAAATCTCTTCCTCCCAGATACAATATCCTATTCCGGTTCCTGCATCAAAACCACCCGTGAAGCATACTCCCCACCCCTATGGATGCAGTTGTGTGCAACCCGCATTTCCACGCTGTTGAACCCATCTTTGGTATTTCTGTTAGGAAAAATGAAATTGCTGGCGCTGGAGGTTATGGTGACCCGCAGC # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCAGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51610-54659 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS999951.1 Lachnoclostridium pacaense strain Marseille-P3100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 51610 32 100.0 34 ................................ TTGACAAGCAATGTTGCAGCATCACTTATCATCA 51676 32 100.0 33 ................................ GCCAATGAGCAGTACTTTTCAGTGTCCCAATAC 51741 32 100.0 33 ................................ TAATTATCCATTGTTTATAGGCTAATTGTAAGC 51806 32 100.0 34 ................................ AATATCAGAATTTATTGTTGGCATTGGGCCTTTT 51872 32 100.0 33 ................................ TCAATATCCTAGCCACTCTCTGAGTGACGTAAT 51937 32 100.0 33 ................................ TTGTTGTACAGCCCAATGGTGATAGCGATACCA 52002 32 100.0 33 ................................ CCTTCCATCCTTACACGTTCCTACACCCTTCCA 52067 32 100.0 35 ................................ TTCATGGAATCGCCCCCTGTGATACGATAGCCCAA 52134 32 100.0 34 ................................ TTCGTGAGGGAATTGTATATAATCCCTCTCTAAT 52200 32 100.0 34 ................................ TCTAGGTCCATATACTGACCGCTGTACAGTGTAT 52266 32 100.0 35 ................................ TGGTATAAGCCCCTGTTGTAGTTGGGGGCGTATCA 52333 32 100.0 34 ................................ ACCAATGGCGTGTATGAGGCGGAGCTGCAGCATG 52399 32 100.0 34 ................................ GAAATAATACGAACGGAGGAACAGGATGAAAAGT 52465 32 100.0 32 ................................ CGCCGGCCATAGCCTCAGAGATTGCGCGTCTG 52529 32 100.0 34 ................................ CAAGCAGGCGGTGTATTCCATCCGTCAGGATGTG 52595 32 100.0 34 ................................ CAAGGCCGCAGCTACAGCCCTGGGATATAGCGAT 52661 32 100.0 34 ................................ TGAGGATATGTCTAAGGCGTCTAGCCAGCCTTTC 52727 32 100.0 32 ................................ CGCCATGTCCTTGGCTGTCCCGTCACAGTCCC 52791 32 100.0 34 ................................ CCAATGAATTAAGTATACTAAAGAAATACGTCAT 52857 32 100.0 33 ................................ AAATAAGGTAAGTCAGAGCATCCTGAAACTGTC 52922 32 100.0 37 ................................ AATATGAAACAGTTCGGAAAGGAACTGGGGGAATTTG 52991 32 100.0 33 ................................ AATAGCGGATATAGCCTATCTGGGGACAATGGC 53056 32 100.0 33 ................................ AACCGCATCCGGATATTGTGCATACGTCAGTGA 53121 32 100.0 34 ................................ AATCTGGATGGCATTTTCCCCAAATGTATTGTCT 53187 32 100.0 34 ................................ TTGGACTATTTTGTCTTTCCGGCTGGAATCATCA 53253 32 100.0 34 ................................ ATGCATTTCATCATACTGATACTGCAAGCGGCAT 53319 32 100.0 34 ................................ AAAATAATCACCGTCCCGCCCCGGAGGTAACGAG 53385 32 100.0 33 ................................ TTTAACCATTCATTTGCTATGCCGGATGCAAAT 53450 32 100.0 33 ................................ GCAAAGCCTACATATAATCGGTTAATGGAGGAT 53515 32 100.0 33 ................................ ATCATGCATTTACCTCTTCCATGGTCAATATCA 53580 32 100.0 34 ................................ AACATCGACACGAAACTGCCGGAGGTTACGGACC 53646 32 100.0 34 ................................ TTGTTATGCCCAGAAGGAGGTGGTGCGTATGCCT 53712 32 100.0 33 ................................ CCCCAATCAGGAAGTTGGAAATGCGGCATGTCC 53777 32 100.0 35 ................................ ATCAATTACAACATGCACCCGGTCGATAAGTGGTG 53844 32 100.0 33 ................................ TTCGCCGTTGTTAAACTCTAAGGTTTCCACGCA 53909 32 100.0 34 ................................ GTTGTAGGTGGCCTGCTGCGCCTCTGCCATCTCC 53975 32 100.0 33 ................................ ATAGATTTCCCCTGTCGCCGGGTCAAATGTTTG 54040 32 100.0 34 ................................ ACGCTGAATACCGAGCAGGCCACATTTGCGCCAC 54106 32 100.0 33 ................................ CATGCCAGTTCATAGTTGATGACGGCACATATG 54171 32 100.0 33 ................................ CAGTCTGAACTGTTCGAACAGTCCAAGGCCAGG 54236 32 100.0 34 ................................ GGGGCGAGATATATTGGGGATTAACTTGGATTTT 54302 32 100.0 33 ................................ ATTAAATCGTGAAGAATGTCCTTAGTCAGCCAC 54367 32 96.9 33 .......T........................ TTGATGCATCCCTGGGGGTTAGGCCAATAAAAC 54432 32 100.0 33 ................................ GTTATCGCATTGTTTACCAATGCGCCAATTGCC 54497 32 100.0 33 ................................ CAAGATGGTATACCAGCATTCGGAGAAGTTCCG 54562 32 100.0 34 ................................ TAGGGAATCGGAAAAGGGAAGGGCGGGCTTGCCA 54628 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 47 32 99.9 34 GTCACGCCTTGCGAGGGCGTGGGAGTAGAAAT # Left flank : GGGGATATTACAGAGTATCCGTGCTATTTGATGAAGTAGGTGGTTATATGATGGTGATTATTAGTTATGATGTCAGCACAGTCGATAAATCAGGGCAGACACGGCTGAGAAAGGTGGCAAAGGAATGTCAAAATCATGCACAGCGGGTACAGAACTCAGTATTTGAAGCAGATTTGGATTATTCTACCTTTCTGAAATTAAAAGATGCATTAATCCGGCTGATTGATGAGGAGAAGGACAGCCTGCGATTTTATTATCTTGGAAACAACTGGAGCAGGAGAGTGGAACATGTAGGAGCAAAACGCGGTTATAATCCAGAGGGGGTTATTATTATTTGAAGTAAGGCGAAGATGTGGTGATACGAAAATAGGTGGGAGGTTCGCCTGAAAAATAGTGTTTACTTTGGGATTTTCCTTGCATGGCAGAGGGGAAATGTATTAAAATAATAAAGTCCGCCCCGTATTTAGTGGTGATGACGGCAGGGAATACTATTTGTTGGG # Right flank : TGTAATGCGTTGTAGAGGGTAAGACAGGGGTTATGTCGTAAGCGCCAAGTATTAGGGTGGCTGGCGCTTTACTACCAAATGATCCATAATAGTAGATAGCTAGATGCAAGCATTTTACTCTGGAATACAATGTATCCCATTGTCAGATGTGAGCACTTCACTACATATTTATGGAGGTGTTAAAAAATGTCCAGTTACAATGCCCGAGTACCGGCTGACAAGCAATACCAGCTGATCATGGAATGCAGGGGCAGCGGTCTCACTGATTTTCAGTGGTGTAAGGAACATGGGATCCGTCCCGGGACCTTTTACAACTGGGTCAGCAGACTCAGAAAGAAAGCCTGCTGTGAAATTCCTGAATCCATTTCCAAGGCAGAACCAGCACCATCGCCAGCGCAGGATGTGGTCCGTTTAAATTTCAATCCAAAGGAAGAACGGACGGAACCGATGTTTCCAGTCCAGTCCGTGTTAGAGGGTCCATCCAGAATCCCAGAAATATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGAGGGCGTGGGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //