Array 1 22479-22041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZR010000011.1 Pectobacterium versatile strain KC03 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 22478 29 100.0 32 ............................. GCGTGCAAAAGAGCGAATGCGTGGCCTACGTA 22417 29 100.0 32 ............................. GCGTGCAAAAGAGCGAATGCGTGGCCTACGTA 22356 29 100.0 32 ............................. GTCAAAACCACACCATCGACAGAGGACTTAAG 22295 29 100.0 32 ............................. CCGCGTTCAGGCAAACAGAGAAAAGACGTTCA 22234 29 100.0 75 ............................. GGTGTTGGCAAAAACTTCCGCGATGCTGACTAGTGTTCCCCGCGCCTTCTCGGTAGATGCCTAGCCAGTAATCGC 22130 29 96.6 32 ............................T AACAATGCCGGAACTGAAACCAGACCGCGCAA 22069 29 89.7 0 ............T............G.T. | ========== ====== ====== ====== ============================= =========================================================================== ================== 7 29 98.0 39 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGTAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTGTTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : AATAGTAGAGGTGTAAATCATAACGGTTTCCATCTTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAATAACAGGGAAGGCATCAGGATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGCTGATCTATATAGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGGGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCCGCTAACAACCTGACGAGTATCGTACCGTTCCTCGGGGGTAGCACCTCGCGTAAGGATTATGAGGATG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173185-173824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINZR010000008.1 Pectobacterium versatile strain KC03 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173185 29 100.0 32 ............................. TAGGACGCTTGGATTGATTGGCGGCCCAGTCG 173246 29 100.0 32 ............................. TTATGGCATACATACATATATATAGTAAATAT 173307 29 100.0 32 ............................. GAGCCAAAGATGGAAAAGATTATTTTCACAAA 173368 29 100.0 32 ............................. GACATTAGGTTGCGTTACATCGGCATATAACC 173429 29 96.6 32 C............................ TGATTGATAAAGCTGGCTATGCATCAATAGGA 173490 29 100.0 32 ............................. GACATTAGGTTGCATTACATCGGCATATAACC 173551 29 100.0 32 ............................. CGAGAGAAGCGGCCGTTCAATTAGCTGACAGC 173612 29 100.0 32 ............................. GGGTAATGACCCTTGATCGCTGGATGGTTACG 173673 29 100.0 33 ............................. GGGTTAAGCAATTCAAAGAAACAGCACGCACTC 173735 29 100.0 32 ............................. TCGGGTCTGTTTCTTTATTTGGATTAAATGAG 173796 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : GATGCCTGCATTGGCTGGGAAGACACTGAATCCCTGCTGCGTCAGTTAGCATCTGCGGTACGCGAGCGCCGTAGCAAGTAATCCTAATGGCGAGCAGGAAGCTCGCCATAAAAATCCGGCACAGGCATTGAGGAATTCCCACAAATCTGGCGCAATAAATCAGAACCCTACTTTCTTTGGTAGGTTCTGACCAGATTGGTAAGAACAACGTCCAGCGTTATTCATTTTAAAACCAGCGGGAATGTCTCAGGATATTCTCCTCTACTTGTCAGCCTATGCTGCCCTCGCTGTCGTCGTAACGGAAAGCGTGCTCACAAAATTCTTCAATCTATTGAATTATAAAGGAAAAATATCTTAATTCGGTAGGGCAGAGTGGAACGCGATTTGTCTATTTTTTATCTTTTTATAATCAATGAGTTATAGATATATACCGGTGTAGAAAAATCGGTAGGATTCTTTATGCTGGAAAAAGTGTTATAAAACAAATCTCTATATTTAGA # Right flank : GTGCGGTTAACCACTCCAGCTAACAGCAATTACATACCATCAACGGTTACGGGTCAGGAATGCTGTAATAGTATGAAAAGTAGCGGGTGCACCGCGCTGCAGAGTGGTATTTACCACAGCAGGTGGTCGATGCGTTTTATCTTGTTTTTTAGCAGTGCAGTTTCGGGAAGGTATTGTTCGATACAGGGCAAGGTGAGCGATGCGTCATGCGTTAAAGCCGTGTCAGCGTCGAGAAGGGGATTCTGTCGAGAGTAGATGGTATAACGCTATGCCTGTTTTTTTACCCGGCCATTACTGTAGACCGCCAGTAATGGCCGGGTTTTTGTCATTCAGGGGTAAATTACTTCGCTTTACCCTGATTCGCTACTGCGGCAGCTTTTGCAGCGATTTCGTCTGCGTTGCCCAGGTAGTAACGTTTGATAGGCTTGAAGTTCTCGTCGAATTCATAAACCAACGGCACGCCAGTTGGGATATTCAGTTCCAGAATTTCGTCTTCGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //