Array 1 1062886-1064471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081923.1 Riemerella anatipestifer strain 20160930RA1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1062886 47 100.0 29 ............................................... CTATTTTGTTTTTTAAGTGTGAATTGTGC 1062962 47 100.0 30 ............................................... TTCTACAAAGTCTAGCCACGCACCCATAGC 1063039 47 100.0 30 ............................................... ATATCACGAAAATTTAAAGTTTAGCGACAC 1063116 47 100.0 30 ............................................... AGCCTCTAACTCATACGCACAGGCACAGGC 1063193 47 100.0 30 ............................................... CGACAACTTTTTTTGGGTGGCGCCGCCAGA 1063270 47 100.0 30 ............................................... TTTCGTACATAAATTACGCCTCGTGCGTGT 1063347 47 100.0 30 ............................................... TCTTTATACTAAGAGCATTTAGCAACAATA 1063424 47 100.0 30 ............................................... CCACCAGTAGGGTGGATGAAGAAACTGAGG 1063501 47 100.0 30 ............................................... TAAGCGGTAAGACTGCAAAAGAATTAGCTG 1063578 47 100.0 30 ............................................... CAATACAATTTTGTATTATATTTGCACTAT 1063655 47 100.0 30 ............................................... AAGCACTTGGATTAACAGCACCCACTCTGA 1063732 47 100.0 30 ............................................... CTTTGATAATGCCAATAGCTACACTTCTTA 1063809 47 100.0 30 ............................................... AAAATGTATCATTATTGTTTTTATGCAATA 1063886 47 100.0 30 ............................................... CAGTAGGGGTGGTTATCCAAGCGTGAGGTT 1063963 47 100.0 30 ............................................... CTCCCCAAGACCTATATACATATCGTCAGT 1064040 47 100.0 30 ............................................... TCCATTGATTGGATAGTATCTTGACCTGTA 1064117 47 100.0 30 ............................................... ATATCTACTAAAAAAAATGAAGGTAGGGGA 1064194 47 100.0 30 ............................................... CCAAGTAAATATCACAAAATCTTAAGAGAA 1064271 47 100.0 30 ............................................... TCTTCATTAGAAAGAGGGATATCAAGCATT 1064348 47 100.0 30 ............................................... ATTTTCATTAAATACCCTTGAATCCTTTGT 1064425 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Left flank : ATCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGTTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTTTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTATTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA # Right flank : CCTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTCTACTTTAGTAAATCCTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGGCAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCGTCTTCAAGCCGTTTTCGGAATAGCTGAGCCGCTTTACGCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCGATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATAGTTGTCTTTTTTCTCCGGTATAACATTTATAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,4.5 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //