Array 1 30497-29919 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULE01000037.1 Vibrio ruber DSM 16370 strain CECT 7878T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30496 29 100.0 32 ............................. CGTTGTTGTCCGGCCAATCTCGGCAGCTTGGT 30435 29 100.0 32 ............................. CGAACATCAACAAAACGACTGATATCAGCCAT 30374 29 100.0 32 ............................. ATTAAATTTGCACCGCAGCAAACTGTAACGTA 30313 29 100.0 32 ............................. GAATTGATTGCCCGCGTGGGTGGTGGTGTGGC 30252 29 96.6 32 ............................T CAAAAACAGCTTGAAACACGCTGATAAAAATC 30191 29 100.0 32 ............................. CAATTCCTAACTTCTCAGCGCCGTACTTTCCA 30130 29 100.0 32 ............................. CAATTCCTAACTTCTCAGCGCCGTACTTTCCA 30069 29 100.0 32 ............................. AAGTCAGGGGGCATCGAATAAAACATACGGGA 30008 29 100.0 32 ............................. CGGCTGACGGGGCTATTCGAGGGTTTGATGTG 29947 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TTTGGGCAAACTCGTGATTGTAAGGGATGGTTTCGTACATAGTGCAGAGACTCCGTGAGTTATTTTGAAATACCGCCACACAAAGTTCCTACGCTCTGAGTGGCGAACTGAAACAAGGTGTAGGAATACCGCACTCACGATACGGCCAGCCAAGGCTGCCTTGTCCAGCTCACCATAATTCAGATGTGCTGAGGCCGTACATAATAGAAAACCCAAATGATGTTGGCAATCCATATGCTGTGAGTTGTTGCGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGAGGGTAGGTTATCTGTTTTTGGGAAAATAAAAGTATGAAAAAAGTATGAGATTTTGGGTGTGGGTTCTAAAAATAATCAGCCGATGATTGTCTGAAATTGATAAAATTCAATCCAGTTGTAGCACTTTGGAAAGATGATTTTTGTTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGACCTATATTTGGA # Right flank : ATCTTGATTATGACTGTCAGCACCGGCTTATCAAAGTTGAAAAGCCCGACGGCAGCAGCGCTGAATACCGATATGATGCGTTCGGCAGACGGATTCATAAAGCGGTTACCGACAAAACCGGGCAAACCCGGCAAACTGAATTTCTGTGGCAGGGGGATAAACTGCTGGCAGAGTCGGGTGAGCACCACTACCAGACTTATCTGTACGAGTACGGCAGCTTTAAACCGCTGGCACTGGTGACCGGTGAAGGGGCAGACAACGCCACACCTTATTTCTATCACCTTGACCAGATTGGCACACCACTGGAAATCACCGATGCCACCGGTGCCGTGGCATGGTCGGTGGATTACCACAGTTACGGCAATGTGGCTTACCAGCGCAAGGCAGAAATCGTCAGCCCGCTGCGTTTTCAGGGGCAGTATTATGATGCAGAAACGGGTTTACATTACAACCGTCACCGTTACTATAGCCCGAGCACCGGACGTTTTATCACCCCCGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33152-32696 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULE01000037.1 Vibrio ruber DSM 16370 strain CECT 7878T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33151 29 100.0 32 ............................. CATGGGCGACGGGAGAGCACCTGTATGATGTA 33090 29 100.0 32 ............................. TTAAACCGCAAGTGGTTACCACTTTGCCATGT 33029 29 100.0 32 ............................. AGTGACTACCCCATCATGATCAACTTGAGAGC 32968 29 100.0 32 ............................. TTAGGCGGGGGTCTGTGATGAGATGGGATGTA 32907 29 100.0 32 ............................. TCTGGCGAATTCACCGGTGCGTAAATGACAGA 32846 29 100.0 32 ............................. AAGCCGCCATGATCCACTTTGATTTGCTTATG 32785 29 100.0 32 ............................. CCAATGGTTATTTTATTGGCGTCTTGCTGCTA 32724 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : GGGCGAACTCGTGATTATAAGGAATGGTTTCGTACATAGTTGATTCCTTGGAGAATGATGAAAATAAACTCACCACAAGAGTTCCTACACTCGGGTGGTGAACTGGAACAAGGTGTAGGAATACCGCTCTCCAAGACACGGTCAGCCAAGGCTGCCTTGCCCAGCTCACCATAATTCAGATGTGCTGAGGCCGCATATAGTAAAAAACCAACTAAAAGTTAGCAACCTATAATACTTGGAGTCTTGTGAGCGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGAGGGTAGGTTATCTGTTTTTCGGAAAATAAAAGTATGAAAAAAGTATGAGATTTTGGGTGTGGGTTCTAAAAATAATCAGCCGATGATTATCTGAAATTGATAAAATTCAATCCAGTTGCAGCACTTTGGAAAGATGATTTTTGTTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGTTCAATAATCTATATTTGGA # Right flank : ATCTTGATTATCAATTTCAGCACGGGCGGCTGCAGCAGGTCAGCCTGAACGGGCATTGTCTGACGCAACACCAATATCAGGTGAGCGGTCTGGAAACCCGCCGCACGCAGGGCGCGTTGACCAGTCATTTTCAGTATGATGAGCTGGGCCGGTTGGGTGAGCACCACTACCAGACCTATCTGTACGAGTACGGCAGCTTTAAACCGCTGGCACTGGTGACCGGTGAAGGGGCAGACAACGCCACACCTTATTTCTATCATCTTGACCAGATTGGCACACCACTGGAAATCACCGATGCCACCGGTGCCGTGGCATGGTCGGTGGATTACCACAGTTACGGCAATGTGGCTTACCAGCGCAAGGCAGAAATCGTCAGCCCGCTGCGTTTTCAGGGGCAGTATTATGATGCAGAAACGGGTTTACATTACAACCGTCACCGTTACTATAGCCCGAGCACCGGACGCTTTATCACCCCCGACCCGATAGGTTTGGCAGGTGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 111944-113316 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULE01000008.1 Vibrio ruber DSM 16370 strain CECT 7878T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111944 29 100.0 32 ............................. GCACTAAATGGCCTCGCGAGCAAATCTATCTC 112005 29 100.0 32 ............................. GGAGGCTCGCCTCCCCGTTATTTAATTATTAA 112066 29 100.0 32 ............................. TCCGCCAACTCAACCTGAAACATAGGATATTG 112127 29 100.0 32 ............................. CGGTGCATTACGGAAATGCCGGATACCTTGGA 112188 29 100.0 33 ............................. TAGATATCGATAAAAAACTGGAAGAGCTGAGAA 112250 29 100.0 32 ............................. CAATGGATCGCGTTATTGGATTCGCGAATCTA 112311 29 100.0 32 ............................. TTCGTGTTGAGAATGCCGAGTTTATTGAAATC 112372 29 100.0 32 ............................. AAATTAGCGAATTCTTTAATGAGACGTCAGCG 112433 29 100.0 32 ............................. ATTTAGGCCGAAATACTCATTAACATTTCTTA 112494 29 100.0 32 ............................. TTGTTGCCATGAACGATTTTAAAGCTAGACAG 112555 29 100.0 32 ............................. CAGTATAAGAAGACTCTTGGTTCTCTTGGTGG 112616 29 100.0 33 ............................. TGATTGAGCATGTTTGAATATATATCCCCTCTC 112678 29 100.0 32 ............................. GGTTATTTCTCGCGCCCCATGGAACTGTGTAG 112739 29 100.0 32 ............................. CTGAGCCAATGCGAGCGGGGAATTCACACCCC 112800 29 100.0 32 ............................. CATCTGAACATGGTGATCTGGAGCTGTTTGCA 112861 29 100.0 32 ............................. GCTTGCGTTAATGGACTGCATATCCGCAATTG 112922 29 100.0 32 ............................. CCTGGCCGAGGGGGACTTCGGGCTGATCGCTG 112983 29 100.0 32 ............................. TCTTAAATTTTTACTATTGAACGCAAAACCAA 113044 29 100.0 32 ............................. GCGGGAACGCCAGGTGCTATGTGCAGTTCAAC 113105 29 100.0 32 ............................. GACGCTCTCATTGTAATGTCTGATGCCCTAGC 113166 29 93.1 32 .............AC.............. AAACTCCGGAAATATTTGATACTATCGCTATA 113227 29 93.1 33 .............AC.............. AATCAAAATCTGGGGTGTTGCCAGTTACATCAT 113289 28 72.4 0 AC.........T.A.........-..TTC | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.2 32 GTGTTCCCCGTATGTACGGGGATGAACCG # Left flank : TAATACTTGGTTTGTCATTTTTTTGCGAGTGATTTCAAAGTATTGGGGATATTGACCTACGGTCTCACTGTTTGTTTTTTCTAGCCTCTGGCACTGAGTTGTGACGCACATTTTGTTCCTCGATTTCAGAGACATCGGTGCTCAGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTGTTTGGCGGTGTCACACGCGTTCCAGAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCTTAACCATTCTTCCTTGAATGGTTTTCTTGGTTGGGTGGCTGATTTGAGTGGGGGGAAACACTGAATCAACGAAACTCAATTGATCGATGAGAATAGCTGAGCAGAAAGAGGTGGAATTAATTGCGCACTGAACTCAAGATAGCTTCATCACCTGCCATATGGAAGGCCTTTAAAACCACTCCTAAATGTTGGTAGATTGTAAATGCCGAAATTTGTATTTATAAATCAACTGACTACAATTAGA # Right flank : CACGGGTGATTGAGCGCTGATGAAGAGAGTAATTGATTATATTGTTATTAATTGTGTGAATAAGCTTGAACTTCTTCTTGGTCTGTAATTTTTCCCGTATTTAGAACAGGAGGTGTGCTATTTTTGATGACATTCAATTGATGACTGGAATCAACCTCTCATGGAAGAACCTGCCTACTTCTTGTACTGGGGCAAGGCGAATCAAGCACTGACATCTCATGGGGATGGCTACCATCTTTTGCCTTATCATAGTCTTGATGTGGCGGCTGTCGGGCAACAACTATTACATCCTGAAAAACCACTCACCTGTGAGTTGGCCGAATTTCTGGACATTTCACCAAGTCAGCTCAATTGTTGGTTTACTTTTGCGCTGACACTACATGATTTAGGCAAGTTCGCTTCTGCTTTTCAGGCGTTACATCGGCCACCCGACAGTTCATGGTTACCACATTGTCGCCGCACATACGATGGCAGCGAATACCGGCATGACCGATTGGGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122402-124809 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULE01000008.1 Vibrio ruber DSM 16370 strain CECT 7878T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122402 29 100.0 32 ............................. CGGCACCTTCCAAACGCTTGTACGTAAGGTCA 122463 29 100.0 32 ............................. GCTCAACTGAGACGATGAAAAAATCAATCGGA 122524 29 100.0 32 ............................. CGGCAGGTTGCCATTGATAACAAAGAGATAGT 122585 29 100.0 32 ............................. GCGTCAGCGCTGAACTTCATCAGGGCCCTTGA 122646 29 100.0 32 ............................. CTCACTGTCTGCTATCACCGGCGCTGCCGGAA 122707 29 100.0 32 ............................. ATAATATTCCCGCTTGTTAACTCACCATATGT 122768 29 100.0 33 ............................. GGGTGCTCACTGAAGGCGCGTGAGGCTGTAAAA 122830 29 100.0 32 ............................. CCAGCAATTAAATGATGAATTTGGCCGCCAGC 122891 29 100.0 32 ............................. CACCGCTGGAGATTTGAGATCGTCATTAGAAA 122952 29 100.0 32 ............................. TGTTGGTACTGCGGATGTGATTTACCAGAAAA 123013 29 100.0 32 ............................. TAGCCCCTGACGTGTTATTTGATGGACCATTT 123074 29 100.0 32 ............................. TTCGTCATAAGGCTTGGCGTCGGCCATGGTGC 123135 29 100.0 32 ............................. GCGGATTGAAACCACTCAATCTTTTCGCCAAA 123196 29 100.0 32 ............................. GCTAATTTTAACAACGGCAATTTTGGTGTAAA 123257 29 100.0 32 ............................. TAGCCCCTGACGTGTTATTTGATGGACCATTT 123318 29 100.0 32 ............................. TTCGTCATAAGGCTTGGCGTCGGCCATGGTGC 123379 29 100.0 32 ............................. GCGGATTGAAACCACTCAATCTTTTCGCCAAA 123440 29 100.0 32 ............................. GCTAATTTTAACAACGGCAATTTTGGTGTAAA 123501 29 100.0 32 ............................. CGACTTTAGCCACTAACTGGGTAATCCGTACA 123562 29 100.0 31 ............................. TGGGTTTCTAATTTTGAATCAAACATTAACG 123622 29 100.0 32 ............................. GTATCTTTGAGCTGTCCGTTTGAGTTGAACGC 123683 29 100.0 32 ............................. GAGTGGCAAGAACAATCATTCCCTGAAATCGT 123744 29 100.0 32 ............................. TCTTGTGAAAATTCACGCCAACAACACCGCTA 123805 29 100.0 32 ............................. TCTTGTGAAAATTCACGCCAACAACACCGCTA 123866 29 100.0 32 ............................. TCTGATTAAGTCTATTCAGTCCGATTACATAG 123927 29 100.0 32 ............................. GTAAAAAATGAAAAATGCGAATGCACCAGCAA 123988 29 100.0 32 ............................. TGGTATCACCACCCGTACCAGTTGCAACCGTC 124049 29 96.6 32 A............................ CAGCTCGAGACAACTCAACGCTTGAGGGTCGC 124110 29 100.0 32 ............................. ACAATTTACGGGGATGCTGAAATATCATGACC 124171 29 100.0 32 ............................. CGATCCATCTCGAAATTCGATGTTATCACCAG 124232 29 100.0 32 ............................. TCGCACGATTTAGCGGATTCGTTTATTATGGG 124293 29 100.0 32 ............................. GCGTCTGGCCTTACGGTTATACTATGCCTATT 124354 29 100.0 32 ............................. ATGTTGAATTGCTTCTTTTGTCATTGACATAG 124415 29 100.0 32 ............................. AAATCTGTGAACTCCGCGATTCAATAATTGGC 124476 29 100.0 32 ............................. AGAACCGCCAGAAACATCTAATGAAACATTTT 124537 29 96.6 32 .............G............... GTGCGACGGTCAAAACAAACACTGACAGAGAC 124598 29 96.6 32 .............G............... ACGAATGGATGAAGACTCAGCCAAAAAAACAA 124659 29 100.0 32 ............................. ATAACTCTTGGTCTTACGAATATTGCGGTCGC 124720 29 100.0 32 ............................. GCCGCGTATGAAGCAGCAAACCAATCTGATTG 124781 29 89.7 0 .............G.........A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.5 32 GTGTTCCCCGTATACACGGGGATGAACCG # Left flank : GAGCCTGAATCTTACGGTGATGTCGGACACAGGAGCAAATAGTTATGAGTATGTTGGTTGTCGTCACAGAGGCCGTACCACCCCGCCTACGTGGCCGGTTAGCCGTCTGGTTATTAGAGGTACGTGCTGGAGTGTATGTCGGAGAGGTCTCGCGACGAGTTCGTGAGATGATTTGGGAGCAAGTGACGCAACTGGCGGAAACCGGCAATGTGGTCATGGCGTGGGCCACCAATACTGAATCTGGTTTTGATTTTCAGACGTATGGCGAAAACCGCCGGGAGCCGATTGATTTTGAGGGGTTGAGGCTGGTGAAATTTAAGCCAATCGAGAGTGATATGTAAGCTGCTATAAAAAAGATAAGCGCGGCACTGTGACAGGCCACCGAACACCAGATCGTTTGATGATTTTCGGTCAGATCACTAAGCGTCAAAATAAGGAAAAATGTTGGTAGATTGTTAACTTGGATATTTGTTTATATAAATCAAACGCCTACAATTAGA # Right flank : GATGTGTGGAGTGGCACGCAGTGCATACCGGTGCCACTCCGCTTGTTTTCAGCCTATCGCTGGTTTACTCATCGATCATGATATCTTCTTTCCTCAGATTGATCTCATCAAAGGTAATCAGATTATTGAGGTACAGGAGCACCTCCCGAAGTTCATTTTGATCGACACTGGGGTGGGTATTGGTGATCAAACAATCAATCAGATAGCCGCGGGCGGTAAGGTGGAGGTCAGGATTTGGTTGTTGGTTTTGTATCATAAGTATTCCCTCTGAGGATTCATGTTTTCCACCACTCAAAGGTTCCTAATCTTCGGGTGGTGAGTTGGAACAGGGTTAGGAACTACCGCCTCAAAGGGTAACGGCCAGCTAACGCTGCCCTGCCCAACACACCATAATTAAGACGTGCAAGGCTACACATAAAGCCTATCTGATACAAGATGGCATTGATGTCCCTTTGAGAGTCATACAGGTTCCTAATCCCGACACCGTTTTTTTCGGTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46685-46832 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULE01000049.1 Vibrio ruber DSM 16370 strain CECT 7878T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46685 28 100.0 32 ............................ TCAGCGTCACTACGGTGTGCGTAATACCCTAC 46745 28 100.0 32 ............................ TATAAAACCGATCATCTCGGCTGAATCATCAC 46805 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCATCCTTGAATGGTTTTCTTCGGTAGGTGGTTGATTTGAATAAAGTGAAACATTGAATCAACAAAGCTCAATTGATCGATGCTCTCAGGGTGAAAAATCATGGAGGATTTTTCAGGATTGCCTTAGCAGGATGCGAATCAATCCGACCCTGATTCGGTGCGCTGAACTCACCCCCGAGGCCTTTTGGGGTACTTTTTCGGCCTTGAAAAAGTACCTGGGGCGCTTCGGAGATGTGATTGAAATCGAGGAACTTGATTGCGTCCCAAACCAGCAGCCTATCATTTTTACCTTCCCAGCCTCCGGCACCTAAATTTGATGCCATCAGACCCTTTATTTTTTACTCTTAAAAAACACACTTAAAATCAATAAATTAGAAACAAGCATTTTTAACAAGGTAAAAAAGGGATTTTTCGACTAACCTTTTGCTGTGACAAGGTTTTTTGTGATAAGTTTATT # Right flank : AGTCCGGATAATAACGTCCGGTGCCAGCTCTCCGTTCACTGCTGTATACATGGGTAATCAGAACTATTGCTTTGAATTGAATCGCATTTTTCTCAGTAATGTGCGCAAAGTGAGGGTTGGTGGTGTTCTTTGTCAGCCCCTTCTTTTATGCTAACCTCATTATCCACAATCAGTCTCATGCCACGATTATGAAAACAACCCTCGACCATCTTCCCGAATATAAACAGCGTGAACTGGCGATAATCTCAATGGTTCTGCGTGACACGTTAGACGATTATCTGCAAGGCAAAGCGGGCAGTAAAAGTGAATTCCGTATTCTGAAAATCATCCTGTTTGGCAGTCATGCCAAGGGGAATTGGGTCAGTGATCCGGTCAATGGCTATATCAGTGATTATGATATTCTGGTGATCGTCAATAAAGCAGCGTTGGTTGAAGATTATGTGGTCTGGCAGCGTGCCGAAGAGCAGATTGATCGCAAAGTGAAATCGGCACCATTGGGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //