Array 1 18028-17863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXRO01000006.1 Bacillus aerophilus strain C772 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18027 32 100.0 35 ................................ ACAGATCAGCAGGCGAATATCGGTTAGATCAGCAA 17960 32 100.0 34 ................................ AGGTACATTAAGCAGCTCACACTTGCTGATTTGA 17894 32 75.0 0 ....................A.A...CTCTGC | ========== ====== ====== ====== ================================ =================================== ================== 3 32 91.7 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAAGCGTAGCAGTCTGTTGTGTTAATGAAATCACGTCGCACTCTATATGAGTGCGTGGATTGAAATTGATCGTCCTTAAAGAAATGACGGTATGTCCAGTGTTGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTGTGCCTCTCAGTAGCCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAAACCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGGGAAAAATGTATTTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAGAATGTTATAATTAGGGCGAAAATCGCA # Right flank : GTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAACCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCAACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATAAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCATCGAATCG # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18931-18768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXRO01000006.1 Bacillus aerophilus strain C772 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 18930 33 90.9 32 A...........T...G................ CCCAAAGTCTGGTAAGTCCATGTTCTCAACTT 18865 33 100.0 32 ................................. TCCATCATTTGAACCATCAGCCATCACCTTTT 18800 33 81.8 0 T...................GA......A.T.A | ========== ====== ====== ====== ================================= ================================ ================== 3 33 90.9 32 CGTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGCCTGAGACAGTTAAGGAAGCATTTAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGTGTCAAGCTAGATAAGGTGAATCAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATTTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATAGACGACGTCTTTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGGAAATCGC # Right flank : TTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTGTTCATTCGACAAAAATGAGAAAAAATGTATATTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAAGCGTAGCAGTCTGTTGTGTTAATGAAATCACGTCGCACTCTATATGAGTGCGTGGATTGAAATTGATCGTCCTTAAAGAAATGACGGTATGTCCAGTGTTGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTGTGCCTCTCAGTAGCCATGTATTTAATT # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 26965-26538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXRO01000006.1 Bacillus aerophilus strain C772 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26964 32 100.0 33 ................................ ATGCTACTTGGAAGGGATTGCTGGGTACAAATT 26899 32 100.0 33 ................................ GGATCTACATCCCATACACTCTCACAGTAATGC 26834 32 100.0 35 ................................ AAAAGCAAGAGCCGCCAATGTTTGACGGTTCAGAT 26767 32 100.0 34 ................................ AAGCTGCAATGGGATGGTTTTCTACTCAATTTAG 26701 32 100.0 34 ................................ ATGCTGTTTCCAAAGTCAATATTCATACGAGAAA 26635 32 96.9 34 ...........C.................... AGGTAGTTCACTTACTCACGCCCTTTCGCATAGA 26569 32 81.2 0 ...........C.A.......C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CTACATGAGTGCGTGGATTGAAATAACGCTGAGGATGCACCAGAAGGAAAGAAAGACGCGTCGCACTCTACATGAGTGTGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGATGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGGGTAAAAATGTATATTCCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCACTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAACCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGGTTCAAATTTTATCCATTCGTAGTGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27605-27309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXRO01000006.1 Bacillus aerophilus strain C772 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27604 32 100.0 35 ................................ CATTATTGTTATATCCATCTGAACCAGTGTTAGCT 27537 32 100.0 33 ................................ ATCCAGTCGAAGCCTTTTAAAATTCAAAACAAC 27472 32 100.0 35 ................................ AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27405 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27340 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAGTAGATTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGATGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGGGTAAAAATGTATATTCCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATATGCTACTTGGAAGGGATTGCTGGGTACAAATTGTCGCACTCTATATGAGTGCGTGGATTGAAATGGATCTACATCCCATACACTCTCACAGTAATGCGTCGCACTCTATATGAGTGCGTGGAT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //