Array 1 1730117-1727235 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSP01000001.1 Avibacterium avium strain NCTC 11297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1730116 32 100.0 34 ................................ CGCCTGATTTTGCTGATAAAAGGCATCGGCGACC 1730050 32 100.0 34 ................................ TGTCATTGTTGGTGTAGTACTAATGGTTGCAAGC 1729984 32 100.0 34 ................................ ACCATTTTCTAAATAGCTATTCGCATTGGCGATA 1729918 32 100.0 34 ................................ TGGATAAGATCCCAAACTAATTAAGGTTCTTTTC 1729852 32 100.0 35 ................................ AATCACACCGTCAGCATCGGGCAAGGTGTGCGAAA 1729785 32 100.0 33 ................................ ATCACAGGGCTTGTGCAACGCTTTGACCAGTGT 1729720 32 100.0 35 ................................ TTCGCTCGGCAAGCTTAACGTTTCAAAGCGGTCTT 1729653 32 100.0 36 ................................ ATTTCGGTGGGGATTTGTTGGGGCATTTTGTATCTC 1729585 32 100.0 34 ................................ TCTCCAATTAAACTCTGTATGCTACTTTTGGCTG 1729519 32 100.0 34 ................................ CGCCAATCGTATTGACCCCACTCTTCAAATTTTT 1729453 32 100.0 36 ................................ CACGTCCGCCCCATTAACAAAAGGGTAGGCGTGGTC 1729385 32 100.0 34 ................................ GTCCATTGTGGTGCGATACTGCAAAATAAATCCC 1729319 32 100.0 35 ................................ GCTTTCTCCTTGTTTACGGCGATTAATCGCATTAG 1729252 32 100.0 35 ................................ AATAAAATTTATGAGTAAAGCTAAAAATATTTCAA 1729185 32 100.0 34 ................................ GCCGAAATCCCGTTAGTGATGGGGTGGGGAGGGC 1729119 32 100.0 35 ................................ CATTTCGTCGCTGGGAAATCAGGTAAGGTGCGCAT 1729052 32 100.0 34 ................................ TTGAACATTTATTAAGCATTTCGTTTTTCGGATT 1728986 32 100.0 36 ................................ TTCAGATGATGCGCCTGAGTCGGTCCACGCAATACC 1728918 32 100.0 33 ................................ TTGTCTTGCCAGTGCAATAATTTGTTGCGATTG 1728853 32 100.0 35 ................................ ATGATACAGATGAAACAAGCGAGAGCGGAGAACGG 1728786 32 100.0 34 ................................ ACTAAATATGCCATTCAAAAAACAGCAGAGAAAT 1728720 32 100.0 34 ................................ GCAAAGCAAGGGAAAGATTTTGCCCACGCCGCAC 1728654 32 100.0 35 ................................ CCACGAAGTGCGGCAGCTAAAAACATTGACCATTG 1728587 32 100.0 35 ................................ AGCCTCCGCATATCGAATGAGATTAAACAAATGGC 1728520 32 100.0 34 ................................ CCTGCACAGATAGCGAAAAAGGGGAAATAATCCC 1728454 32 100.0 34 ................................ CATACGCCGTCATTGGTTAAAATAAGCTGATAAA 1728388 32 100.0 34 ................................ CGATTGGTGGCATCTTGTCAAAGTCTTTAGGTTT 1728322 32 100.0 34 ................................ ACCGTGCGTTTGGCGGTCAGCGAATTGGTTACTG 1728256 32 100.0 33 ................................ CGAGCCGAAAACTTATTATTGATACCAAATGTT 1728191 32 100.0 34 ................................ GACCGTACTTTGCGCATTCCTGCACGAACTTGCT 1728125 32 100.0 34 ................................ AAGCTGGTTACCACGCTCCATATAATCAGATTTA 1728059 32 100.0 36 ................................ TTAGATAGTCTCCTACGGGAGTTTTGAATTTTCGCG 1727991 32 100.0 35 ................................ TATCCGAATTAAGAATCCAGCGGTCAAACATATAA 1727924 32 100.0 35 ................................ GCCGCTTGCCCAGCAATGCGTAGCCAATTTGACGA 1727857 32 100.0 34 ................................ TAAATTGCGTTTATATGCAAACCGCTTTGAAGAT 1727791 32 100.0 33 ................................ CCGAACTGAAAAAAGGGTTAGAAATTAAATGCC 1727726 32 96.9 33 ...............................T ATTTGGTTTGCGTCCGTTGCCACAGGTTCGGTC 1727661 32 100.0 35 ................................ AGCGATTTACCACTTTTCACACCAAGCAAATTTTC 1727594 32 100.0 34 ................................ AAGCACGCAGGGCGGGGCGTTATCGCCTAATCCC 1727528 32 100.0 34 ................................ GCCAATCATAGATTGGATAAGCGTTGAAAACATT 1727462 32 100.0 34 ................................ TGGTGATGAGCCACCAACATCAATGGAGAATCTA 1727396 32 100.0 33 ................................ CCCGCTCTGCTCCATCAAATGCCAACCAGTTAT 1727331 32 100.0 33 ................................ ACGTCAAAAACGAATCGCGCTTAGTGTCGCAGG 1727266 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 44 32 99.9 34 CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Left flank : TGCGTTAGGATAACAATATGTTAATGCTGATTACTTATGATATTTCTCTTGATGATCCACAAGGTCAAGCGCGTTTGCGTCGTATTGCGAAACATTGTCTTGATTATGGTGTTCGCGTTCAATATTCTGTGTTTGAATGTGATATAGCTCCAGATCAATGGGTAGTATTAAAATCCAAACTATTGGATACTTATAACCCTGAAACTGATAGTTTGCGCTTTTACCATTTAGGAAGTAAATGGCGCAGAAAAGTAGAGCATCACGGAGCAAAACCATCAATTGATATTTTCCAAGATGCCATAATTCTATAATCGCTAACCTATTGTTCTCATCAAATCCCTGCTAGCTTAGCGAAGTATCATTATTCTTTAAAAATCAAATAATTAATTCTGAATTTTATTTAGCAATAATTATGCTATAATCTATCCTCGCACAGAAAAGAATGATTAGCGAAATACCAAGGTTAATACCTTATTTTTGTTATATTTTTTCCCTGTGCT # Right flank : TAATGCTGGATAGGGATTTTGCGAATATTGTAATACCGAGCATCCCCATATACTATGAACAAATAACTTCCCCAATTTCCACCGCACTTTTGATTATTACTCTTACCACAATAAAAAAATCCTCCCGAGGGAGGATTTTTTGTGTATTCAGTATTCATCAAATTAGAACAAAATACTTCCCACTAAAGCAAAGCCGAAACCGGTGAAACCGATAAGGGTTTCTAGCACAGTCCAAGTTTTTAATGTGGTTTTGGTATCCATTTCTAAGAAACGGCTTACTAACCAGAATCCACTGTCATTAACATGGGAGAACACGGTTGCGCCAGATGCAATGGCAATGACGATAAAGCATAAATCAAGTTGGCTTAAGCCTGTCGTTGCGGCAATCGTTGGAGCAATGAGTGCAGATGTCGTTGTTAATGCCACAGTGGCTGAGCCTTGTGCTACACGCAATGTCATTGAAATAATGAAGGCCGCAACAATCACAGGCATACCCGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //