Array 1 11180-11513 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWS01000058.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2870 NODE_58_length_11514_cov_4.63478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11180 29 100.0 32 ............................. TTGTAATACTGATTGAGAGCACTGTTCTGACC 11241 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 11302 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 11363 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 11424 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 11485 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2506-1256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWS01000586.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2870 NODE_586_length_2533_cov_3.61259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2505 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 2444 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 2383 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 2322 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 2261 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 2200 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 2139 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 2078 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 2017 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 1956 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 1895 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 1834 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 1773 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 1712 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 1651 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 1590 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 1529 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 1468 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 1407 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 1346 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 1285 29 96.6 0 ............T................ | A [1258] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCAACCTACCTGGAGCCAGGCGCGTT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1322-196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWS01000489.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2870 NODE_489_length_3065_cov_3.77674, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1321 29 100.0 32 ............................. TGATTCATTAAGTTGGGCGATACCCATGACGG 1260 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 1199 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 1138 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 1077 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1016 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 955 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 894 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 833 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 772 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 711 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 650 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 589 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 528 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 467 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 406 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 345 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 284 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 223 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGAGATCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //