Array 1 20222-21044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYJ01000087.1 Weizmannia coagulans strain B4096 NODE_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 20222 32 93.8 34 ...........T.C.................. TATGATGATGATCTGGATGCTGATATGGCTAAAG 20288 32 93.8 33 ...........T.C.................. ACCAATTTTGGCAATCTGTTCGGTTGTTACAAG 20353 32 93.8 34 ...........T.C.................. ACAAATGTAATGCGGTCATTCAGCTGTCCCGTTG 20419 32 100.0 34 ................................ CATAGGCATGATTCCTTTCGTAGATAAAAGCCAG 20485 32 100.0 35 ................................ CGCGTCATACGCGCCTGAATCTTTCCATGTGCCGG 20552 32 100.0 34 ................................ ACCACCTTCATCATTTTTGCAATCCAACATTTGT 20618 32 100.0 33 ................................ TTGCCTGCGAATTAAGAGCAAATCGCCATCCAT 20683 32 100.0 34 ................................ CGAAAAAGTGACGAATGATATTTATGGACATGTG 20749 32 100.0 34 ................................ AAGACCAAGTCCGTGATTTATCCGCCGGCATTTC 20815 32 96.9 34 ...........................A.... CGAGAAGGTGTGTTTATTACGGAAGATAAGAAGC 20881 32 100.0 34 ................................ ATGGCGTTATCTTCGCCAAGACTAGACCAAACAG 20947 32 100.0 34 ................................ AGTAACCTGAATGATAAATAGATCGGAACCGCAG 21013 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 98.3 34 GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Left flank : TACAGGGCTTTACTTCAGTGCCACTCTTTGGTTTGGATCAGACGCTTACCAGATACTTAAAACCTAACAGTGGGGAAGGTCCTTAGAATGATTTTTAGTTTTAATAGGATATTCAACATCTGTCGAATTAGACGCCGATGCTGAAATTAATCGTAGTAGTACTGATGACTTTTTGCAGCAGGAAACAGAGTAACACGTTTTAGTTCATTTTATATAGCAGAAAAACAAAAATTAACCAGTCCAATTTATCTCGTAAGAACGATTAGTTAAAAAGTGGTTTTTTAACGTGCTGCTTTTTACGACATAGCAGTCTGTAATAAGAATGCTTTTTGGTGAAACTGTGCGAATGAATAGTGTACATGAATTGCCCATGGGATTCGCACCAAAAATCCAATAGATTTTTCCATATAAAGGAATTTTCGTGTAGCAAAACTTGGGATAATATGGGGTAATTTGTAGATATTCGTCAAAATCTATTAAATTTCTACACGATAATAGCT # Right flank : TGAAGTAAGGGACGTTACAGAAGAGGAATTGGGGAAAGTGTTGGAAGAACAGCAGCAGCGAAAAGAACAGCAAAAAAAAGAGGAACTGCTAAAAATTGAGCAAGAGCAGGCGTTGCGTGAACAACAGGAAGCAGAAGCCCGCTTGGCGGCGATGTCGAAGGAAGAAAGATTGCTCTTTGCTATACAATCATTAACAGAATCACAAGCAGACCTGGAAAAAAGCAAATCGGAGTTATATGAGGAGGTAATCGCACAGCAAAATCAGGAAGCTGCTTTAGCCCTCCGACAATATTGGGAAAAAACAGGCCAGTGGAGAGTCAATAAGAAAAAGAAAAAACAGTATGATAAAGTCCTATCCATTAAAAAACTGTTAAATATAGAGTAAAGGCACGGGATCTCTGTAAACAGCTTTTTTTGATGTAAATAGGGCTTGCTGAACGAATCCGACGCTGAGTTTGTGCCCAATTTATCTGCAACCTCTG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACTCCTCGTGAGTGTGTGGATTGAAAT # Alternate repeat : GTCACACTCCTTGCGAGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 47348-53643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYJ01000052.1 Weizmannia coagulans strain B4096 NODE_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 47348 32 100.0 34 ................................ AAAAGGCTTTGTCTGGTATTAAAATTGCTGGTAA 47414 32 100.0 33 ................................ AGACAAGCAGATTAACAGCAACATCCTATATGG 47479 32 100.0 33 ................................ CAAAATATGGTTTGGCGTCATCCATACGTCTGA 47544 32 100.0 33 ................................ TTTAAGCGCAGTCCGAAGTGAATCGCGTCCGTC 47609 32 100.0 34 ................................ CAGAAAAATATCGGCAGTTTTTCAAAAAGAACGC 47675 32 100.0 34 ................................ AATGCTCAAAATTCCCCACTTACTGAGCATGTTG 47741 32 100.0 33 ................................ AATAATTAACAAATTTGAATACATTGGCCTCAA 47806 32 100.0 35 ................................ ATTTTCTCACCTGATGAAGTAGAATATTTCAGGAA 47873 32 100.0 34 ................................ AGAAAGCTGTGGACTGGTTTAATCACCTATCGCC 47939 32 100.0 33 ................................ TTAGTGATTTTGGAAAACCTACCGTCCTTGCAA 48004 32 100.0 35 ................................ ACTGTCTTCAAATTTAACTAAATCGGATATAAAAA 48071 32 100.0 34 ................................ AAAAAGCTTTGTCTGGTATTAAAATTGCTGGTAA 48137 32 100.0 34 ................................ AGGAAATATAAGGAGAATGGAACAAAGCTATACT 48203 32 100.0 33 ................................ ACTTAATGCGCCCAAAGTTGGACTCAATGGCCA 48268 32 100.0 35 ................................ CAAAACCAAAGCCATTTACATTTAAGTAACTGTAT 48335 32 100.0 34 ................................ TGACCTTCGTATTGGCTCATATTCGCGCCTTAAA 48401 32 100.0 34 ................................ AATTTCGCCTGCAATTCGCTTGGTTTGACGAATG 48467 32 100.0 34 ................................ ATCTCATACAGTCGGATAGTGGATATAACCGCAG 48533 32 100.0 34 ................................ ACTCCATCGGCGCTGTCTAGCGCATATCTTCCGT 48599 32 100.0 34 ................................ AATTCGGCTTGCTCAATCGTGCGTATTAACTCCT 48665 32 100.0 33 ................................ CGAGATCAGCTGATTTATTTACTAGAGCGAGGC 48730 32 100.0 33 ................................ GATAAATTCCGCTTGCTGAATCGGTGCAATGAC 48795 32 100.0 34 ................................ AATTTTTGAGGAAGCCTGTACGCCCATCAAAACG 48861 32 100.0 35 ................................ CCCGATATTCACCAGCAAGTTATTAAAGAAACATC 48928 32 100.0 34 ................................ TGCCCTACCCTAATAAGGTTAGGGTTTTTGATAC 48994 32 100.0 34 ................................ CATCCTGCGGGCCAGGAAGCACCATTTGTCACCG 49060 32 100.0 34 ................................ AGCCAAACGTGACTGCGACCGGTGCGCTCTACAA 49126 32 100.0 35 ................................ AATCACCACCCCCGCCCTGCTTTTTATCCCTGGGG 49193 32 100.0 34 ................................ CCAGCCAGAGCCTTGCAGAATGTAATTGAATAAA 49259 32 100.0 33 ................................ ATGGCCAGCGCGCGGATGACATATGGCCTCCAA 49324 32 100.0 37 ................................ GTTCGAAGGTTGTCAGCACTTTTAAATCTTTACCGCA 49393 32 100.0 34 ................................ TTTAAAGGCCGCAAGGGTTAACGCCGGTCTTAAA 49459 32 100.0 33 ................................ TTTAAAGGCCGCAAGGGTTAACGCCGGTCTTAA 49524 32 100.0 35 ................................ TGGTGCTGCATTTGAAGAAATTGTTGAATTACCAG 49591 32 100.0 33 ................................ ATTTGATTCGACATCCGGTTGCTTGCGTATCAG 49656 32 100.0 35 ................................ ACCAATATTCTTTAGCTTGTTCCATCCGCCGGCAA 49723 32 100.0 34 ................................ CCTAGTCAGTAAAATATTTATTCGGATACCTATA 49789 32 100.0 34 ................................ CAATGAGCCGGGGGAAAAAAATACAGATAAAAAC 49855 32 100.0 34 ................................ ATAGATGTCACGTGGATCATCGAGCTTTTTAAGT 49921 32 100.0 35 ................................ AAAATACCAATCTGCATCTTTAAGATCAGGGGAAA 49988 32 100.0 34 ................................ CAGCCCGATCAAACTTACGTCAAAGCCCGCCTTA 50054 32 100.0 34 ................................ TTTGCGTAAATCACAAGTGCGCCGTCACGGTCGG 50120 32 100.0 34 ................................ TTCTTCGTACAATTCTTTCCTTGCGACAGCAAAC 50186 32 100.0 34 ................................ AAATCATTGACAATATTGAACCTTTGACTGAGTA 50252 32 100.0 33 ................................ ATTAGAAGTGCAAAACTCTAGAACATCGGAAAC 50317 32 100.0 36 ................................ GACGAAACTTTTGGTGAAGGGGCCGGTGAAAAGATT 50385 32 100.0 34 ................................ AATTTGAAAAAGAGTGGATTTAAAGATTTGGAAG 50451 32 100.0 34 ................................ ACTTTCCCCGATATGGCTTAACGGTTGCAACAAT 50517 32 100.0 36 ................................ TTCACAGCTGGCCGCCGTACAGGAGAGTGAGGCACA 50585 32 100.0 33 ................................ CGGGCGACGCTGAATTCAAAGCCGAAACAGACA 50650 32 100.0 35 ................................ AATGTTTGCCCAGTTGGCGACGTCGGTGCGAAAGA 50717 32 100.0 34 ................................ AGCTCCGGCACCTTTGCTTTTACGGGTGGGGCAA 50783 32 100.0 34 ................................ CGGCCAACTCCGAAACAGTGTCCCCCTTTTTTAC 50849 32 100.0 34 ................................ AAGCATGCTGTATAACAACCATAAAACAATAAAG 50915 32 100.0 34 ................................ TTCTAGCGTTATAACCGGGCGGTCTGGCATTTTG 50981 32 100.0 33 ................................ CAGGCTGTTTGAAAACCAGTCCTTGCCGATTTT 51046 32 100.0 33 ................................ AGACGGCCCTTGTGGATGACAGCATCACGGTAG 51111 32 100.0 33 ................................ AAATGTGACTTTGCTATTAAAAAATTTTGCTGA 51176 32 100.0 34 ................................ CTCCATTAATAATCTCCCATACACATACGTCAGT 51242 32 100.0 34 ................................ AAAACGCGATTGATGCAATACTTCTGGTAGCTGT 51308 32 100.0 34 ................................ ACGCCAATCGAGGAAGAATTTGAGTTTGAAGATA 51374 32 100.0 34 ................................ ACCGTACCGGCTACTACCCGAGTAAGACTGCAGC 51440 32 100.0 33 ................................ CATCCTTGGCCGTCCGATATGCAATGATTTTGC 51505 32 100.0 34 ................................ TAATTTACCGAGATTGTCACCCACAGAATCATAA 51571 32 100.0 34 ................................ ACGCCAATCGAGGAAGAATTTGAGTTTGAAGATA 51637 32 100.0 34 ................................ ACCGTACCGGCTACTACCCGAGTAAGACTGCAGC 51703 32 100.0 34 ................................ ATTACGATAATCAAAAAGAACGTGAATATATCAA 51769 32 100.0 34 ................................ TTTATTGCCTTCTCTGCTAAAATGGAATTGTCTG 51835 32 100.0 33 ................................ TAGTGATGCATGGGCATTTGCAAAGCCGCCTTT 51900 32 100.0 34 ................................ ACGGGCCCGTAAATCTGCACCCTGCCAGGATGCC 51966 32 100.0 33 ................................ ACAAATATTGATGACGAATTCGGCACAATCGGA 52031 32 100.0 35 ................................ AGTTCGTTTGCTATATCAAATACAATATCCTTCAA 52098 32 100.0 34 ................................ AAATCCTTGCTTTATATCGAATTGCCATAATTCA 52164 32 100.0 33 ................................ CTACGTATTCATCATTATTTTTCATGTTTGCAT 52229 32 100.0 34 ................................ CGGCCAACTCCGAAACAGTGTCCCCCTTTTTTAC 52295 32 100.0 34 ................................ TTTTTATGCCATGATCGCAAATGTCCATGAATTT 52361 32 100.0 34 ................................ ACGCTTGCAGCCGGATCAACATAGCTTTGCCCGT 52427 32 100.0 33 ................................ CGACATTTCCATCAATCGGCCAGTGCTTTTTAG 52492 32 100.0 33 ................................ ACCTGATCGCCCGACCATGATGTTTGCACCGAA 52557 32 100.0 33 ................................ TCAATGGTCCGTCCAGTACGTATCCGGCAGTTG 52622 32 100.0 34 ................................ AAAAATGTAGTACATTTATCCGCAGATGTCGCAT 52688 32 100.0 33 ................................ GGTTCTGCATTTATTTCCGAGTTTCCTCTTGAT 52753 32 100.0 34 ................................ AAAACGCCCGGAATGGCTTTCATAATTTCTTTGG 52819 32 100.0 34 ................................ CCTGCAGGAGGGACACGACATCTTTAAAAATCCG 52885 32 100.0 34 ................................ AAAAATGTAGTACATTTATCCGCAGATGTCGCAT 52951 32 100.0 34 ................................ AGAACCATAGGCAACATCATGATCTGAATAACAA 53017 32 100.0 35 ................................ CTCCTCCAATATGTATAGATCGTCAACCTTCACCC 53084 32 100.0 33 ................................ GCCTTTGCTTGCAGGTCCTGGACAATTTCCGGC 53149 32 100.0 33 ................................ TGATCAATGGTGCTCACTCTATAAAATCACTCG 53214 32 100.0 35 ................................ ACGTTGCAGCCAGTCGCCGATTGCGGTCCCCTGCG 53281 32 100.0 34 ................................ GACGATCAGATCGCGAACATGACGCTTGACGATC 53347 32 100.0 34 ................................ ACCGTTTAAGAGCGGGACTACGTACGTTGTCAAG 53413 32 100.0 35 ................................ ACGTTTTTGACGGGGCCAGCCGGCACAGGAAAAAC 53480 32 100.0 34 ................................ CCGTTAGCCGGCAGCCGGTGTCAAGGCCGCAAAT 53546 32 100.0 34 ................................ GACGATCAGATCGCGAACATGACGCTTGACGATC 53612 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 96 32 100.0 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : TCGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAAGACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCCGCCCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGATATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGACCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTCAACACTTGCGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYJ01000114.1 Weizmannia coagulans strain B4096 NODE_155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 1 24 100.0 28 ........................ CGCGTTGCATCGGGGTCCAAAATGTCTT 53 24 87.5 28 ......C.T.C............. CACGTTGCATCTGGGCTCGGAATGTCCT 105 24 100.0 28 ........................ GGAGCCGTGGACCGGAGCAAATTGTTCT 157 24 87.5 28 ....G....TC............. GGAGCCATTGACCGGAACAAAATGTCTT 209 24 83.3 0 ....G..TGT.............. | ========== ====== ====== ====== ======================== ============================ ================== 5 24 91.7 28 TTTGAAGCAGTCAAAAGGACAAAA # Left flank : | # Right flank : AATAACCGGGGAACTGAGCATATTTGGTCTTTTTGAAGTGTCAAAATACCAAATGCTTTTCCCCGGTAGAATTTGTAATTCATAAGTTTGTGATCATCAATTACTCATAGTAAGACCATCTTCCACCTCTGAACTTATTGAAATTTTTTGCCAGTATCCTGCTCACCCTTTTTTTCGATTCCACAATCCTGCACCAGTCAAAAATATCATTTGTTGTAATCTTCCGCTCTGGAAACAACATCCGAAATTCTCTGACACTGCGGAGGACCGCGGCCTCAACAGATTCAGCATGTCCACAATCCTCACAAATCATTGCATGCCCTTTTACCGCACAGGAAAAAGAACCACAAGCGTCGCACACAATGCCTTTCCGCAATTGATCATACTCATATTTCGGCAAATGAAGAAAAGGCGATTCTTCTATATGCAGCGAAGATAGCTTTTCTGCCAGCCTTCTATGCTTTCCGCTCAGCTTTGCAGAAATTGCATTCAAATCTTTT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAAGCAGTCAAAAGGACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //