Array 1 2300898-2298816 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031785.1 Lacticaseibacillus paracasei strain 10266 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2300897 36 100.0 30 .................................... TCGCAATGTAACATTTAAGCCAGATAGCAA 2300831 36 100.0 30 .................................... CAGCCATATATACTGCCAATAATGAATTTC 2300765 36 100.0 30 .................................... ATGTTTAAAAAGCAATTCTAAATCTGGATT 2300699 36 100.0 30 .................................... AACGGATACGACAACCTTTGACCATCAGGT 2300633 36 100.0 30 .................................... GCCTAAGAGTGGGGAAGGCACGGCTTATTT 2300567 36 100.0 30 .................................... TTTGGCGCAATATTATTAATGCTAGGTACA 2300501 36 100.0 30 .................................... ACATTCAGTTGGGTACACCCACAAGCCCCA 2300435 36 100.0 30 .................................... CTAAATTATCATCCATAAGAGCGAAGCCGT 2300369 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 2300303 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2300237 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 2300171 36 100.0 30 .................................... TCAAGATAGACCCCGTTAAATTGGGTGAAT 2300105 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 2300039 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 2299973 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 2299907 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2299841 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 2299775 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2299709 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2299643 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2299577 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2299511 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 2299445 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2299379 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2299313 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2299247 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2299181 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2299115 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2299049 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2298983 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2298917 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2298851 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //