Array 1 270597-273733 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJRH01000005.1 Klebsiella pneumoniae strain EuSCAPE_BE115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270597 29 100.0 32 ............................. CGGATCCGTAAGGTTTTTGATAAAAAAAGCGA 270658 29 100.0 32 ............................. GCAAAAAAGTGGGGGTGTGTATGTCTACAGGA 270719 29 100.0 32 ............................. GGATACGCCTTCGGGCTTGTGCCGTTTACGTC 270780 29 100.0 32 ............................. GATTTTGCTAAGTGCCACAATATTCCCCCCAT 270841 29 100.0 32 ............................. GCATTTCAGAGAGTGCACACCCGCTTGATGCG 270902 29 100.0 32 ............................. GCCGAAAAATCGTGCCGTGACAGCAGTTTGTG 270963 29 100.0 32 ............................. CAAAATCTCTGCGAGGAATTGATTTCGGGTCT 271024 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 271085 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 271146 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 271207 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 271268 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 271329 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 271390 29 100.0 32 ............................. GAGACTATTATGCGAAAAACTATTACTCCCGA 271451 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 271512 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 271573 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 271634 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 271695 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 271756 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 271817 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 271878 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 271939 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 272000 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 272061 29 100.0 32 ............................. GCAGTCATGCAGCAATCCTAACAACCTTTCGC 272122 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 272183 29 100.0 32 ............................. CGATCAACGTACCGGAACTACTCTGCAGACCA 272244 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 272305 29 96.6 32 .G........................... TGATTGTCGCTATACCAGCGCTCAAGGAAAAT 272366 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 272427 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 272488 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 272549 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 272610 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 272671 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 272732 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 272793 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 272854 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 272915 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 272976 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 273037 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 273098 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 273159 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 273220 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 273281 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 273342 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 273403 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 273464 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 273525 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 273586 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 273647 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 273705 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGTTGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-257 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJRH01000293.1 Klebsiella pneumoniae strain EuSCAPE_BE115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46 29 100.0 32 ............................. CCGATCACACGCTCCCACGGGCCGTACCAGTC 107 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 168 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 229 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : GACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJRH01000612.1 Klebsiella pneumoniae strain EuSCAPE_BE115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 101 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 40 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAATCAATAAGTTAGACGTTATTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAG # Right flank : GCTATTGGCCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //