Array 1 36863-36407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGN01000001.1 Lactobacillus intestinalis DSM 6629 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36862 29 100.0 32 ............................. CATTTGAGGTTTAGTTTGTGGATCTCCAATTG 36801 29 100.0 32 ............................. ATAGTCACCACTATTCAGACATAATCAAATTT 36740 29 100.0 32 ............................. AATTACATTTTTAGCGCCTGCAGAGTGATAAG 36679 29 100.0 32 ............................. CAAATCATTTAAAATTCTTTCTCGCGTTTGGT 36618 29 100.0 32 ............................. GAATCAGAACAAGAAGACACTAGCACAGATGG 36557 29 96.6 32 ............................C GGCTACTGAAGTAGTGACGAATAATTCTAAGA 36496 29 100.0 32 ............................. TGAGGGACCAGCATTGTTACAAAATCCATCAA 36435 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTATTCCCCACATGGGTGGGGGTGATCCT # Left flank : AAAATTTCTGGATTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAATTTCTCGATAATTATAAGTTGAGTACAGTATTATCTGAATATAAAATTGAAAATCAAAATCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGAAGGAAAATTAAAGCTTTAAAGTTTTCAACGGTAATGTATTTAACTTTAGATAATTTTCAAAATTAATTTGGGTATTGTATGTGATCAATTGGGAAAGGTCTCTCTGAATCTTCAGAAATTATGAGTAGTTACAAATAGGTTTACATTTAAGTATAACTATAACTTGAAAAGGCACTTAAAGAAGTGAGAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATAGTAGAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCAGCATTTGTTTAGT # Right flank : GGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAATAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGACACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAACCAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGGGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48733-47912 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGN01000001.1 Lactobacillus intestinalis DSM 6629 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48732 28 100.0 33 ............................ TGGGAAAAGAAATATAAGCCAGTCCACTTTAAA 48671 28 100.0 33 ............................ TTTTATTGATAATGCGGGATATCAGTCAGATTA 48610 28 100.0 33 ............................ TCAGACTGCGCGAAAGGAAAAGGTTCCCGGAAG 48549 28 100.0 33 ............................ AAATTCCTAATATTTAAAGATTGACGCCTTAGA 48488 28 100.0 33 ............................ TACAAGTTTAGCGATTGGACGGTAGCGGATGTA 48427 28 100.0 33 ............................ TATAGCGGGCAATTTGATAGCTGTCTGGTATGA 48366 28 100.0 33 ............................ TCAATAATCGTTAACCCTTCACTAGCATTTGAT 48305 28 100.0 33 ............................ CATAGAAGAATGTACCAGTACCACTAGTAGCAT 48244 28 100.0 33 ............................ TTTCTTTGATATTTTTTGATGGAATACCGTACT 48183 28 100.0 33 ............................ CTAGACGTGTGAAGAGCCGAATATAGCTCCTGT 48122 28 100.0 33 ............................ TCGAGCCAATCCTTGACCTTGACCATAAGCACG 48061 28 100.0 33 ............................ TTTCTTTGATGTTTTTTGATGGAATACCGTACT 48000 28 100.0 33 ............................ TGTGGGCACCCATTTTAGCAAGCCAGCCTTTAA 47939 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GTATTCCCCACACACGTGGGGGTGATCC # Left flank : TTGTTCTATTTACATTGATGCAAATGAAGATATAATTGAAAATTGGTTTATGGATAGATTTAAGCATTTACTGAAGATTAATAAAAATAATCCTGAAAATTTTTACTATGATTGGGCTAATGAACCGCTCAATGTGGCTGTAGATAGAGCGGAAAAAATTTGGCAAACAGTGGATCTAGTAAATTTGCGTGAATATATTGCTCCCACTAAAAGCCGGGCGAATGTAATCCTGCATAAGAGTCATGGGCACCGAATTGATAGAATATATGTAAGACATTATTAATGTAATTAGTTTTCCTTCAGAACTCTTTGAGTTTTGAAGGTTTTTGTTATAGCCTGTTATCAGGTTAATACAGAATTAAGTAATGTATAGTGTTGAAATTTTAATCTCTTTTTTGATTGGGAAAAGGGCACAGACTAATGTAATATTTTAAATACAAAGTAAATGAATTTAAGGGTATAATAAAAAAGAATTGTTGATATGGCGGGATTCTTTTAGA # Right flank : TAATTTCATATCGTTAACTCTCTTTTCTTAAAAAACTTCACAAACAACAATTTGCCTATGTACCAGTAGTTTGATAAATATTTCTCACAAGCGTAATACAAAAATTTTTCACAAACTATATATAAAGATTGGTATAAAAAAAGACGCTGATTATTCAGCGTCTTCAAATGTTTACTTTTTATTTTAATATGAGAACGACGGAAATTGAACCCATATCTTCCCTAAAAACTAGGACTGTCTTCCCGGTTAGACGACTTATTCTCAATTTCTATTATTCCATATTTTCTTAACCTTAGCAATTATTCGATTCTATTTTTCCGTTGGATAATAGGTACCATTTTCTGAATGATTATATCCAAAAGTATTCCCCACAATACGTGGGGATGATTCTAGCTGATAGAGTGACATTCTCAGGCTTGATATTATTCATCGGCAAACTTCTTTTGCGTGACGGTTAATTTATACTCGTTTGCTTTCTTACGATTTTTGTTCAAAGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACACGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17365-17526 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGN01000034.1 Lactobacillus intestinalis DSM 6629 NODE_62, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 17365 31 100.0 34 ............................... CAGTATAGGTCACTTGCTTGAGAGCCAAAATACA 17430 31 100.0 35 ............................... TCTGTTCAGTACACTTTCAACAATGAAGCTTACGG 17496 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 35 GTTTTTATCTAACTTAAGAGGAATGTAAATA # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGATGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATGTACCCGTAAATCATAGCGCATATATACCTGTTCAAATGTCTGAAGATGTGGGTCTAGAAGATGATGGTGTGGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGGTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAGGCATATGTTGATGAAGATGGTAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTTCAAAAATCAATTTTTTACAGAGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAATCATTTTTATCAAAAATAGAAGTATATTTAAGATGGTCGACAGAATTGGAACTGTAAAGTATTGATTTGTAAGATCTGTCGAAGGGAACT # Right flank : AACCCAAACGATGGGTATGCAACTCACTAAGAGCATGTTTTTATCGAGAAATGTAAATATTGATAAAACTTGGTGTGATGCTGCTAAAGCTGCTATCGCGTTTTTATCTAAGGAATATAAGTTTTGAACTTTGCTGACAGACAAGATATAAGTTGTTTTTATAAAAAATATATAAAATTTGGTACAAAAAAAGCCGTTGATGGTTCAGCGACTTTAAATATATATTTTTTCGAGACTCTTCCGCAATAATACCTACTGCTTTAATATGAGAACGATGGGAATTGAACCCATACCTTCCCTAAAAACTAGGATTATCTTCCCTGTTAGACGACTTATTCTCAGTTTCATTATTCCATATTCTCTGCATTTTAGCAATATTTGATTGTGTTTTTCTGATGGATAATAGTTTTTATCTAGCTTAAGAGAAATATAAACGAAATAACAAAATATCAGTTAGCAGAAAAAATTTGGAGGATAGGAATATGAGATATATGGAAGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 22473-23093 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGN01000034.1 Lactobacillus intestinalis DSM 6629 NODE_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22473 30 100.0 36 .............................. TTAGAGGACGTAATGAGCTTTACAAAGAGATTTAGC 22539 30 100.0 37 .............................. CAGTCAACTTACTGTGTAAGCATGTAGGTAAAAGCAA 22606 30 100.0 35 .............................. GCATGGCAGTCCGCTGTGCTTAGTATCCGCGGTGA 22671 30 100.0 35 .............................. TTGTATTTCATGGCATGTAATCTCCTATGTAATCA 22736 30 100.0 36 .............................. GTTTACCACAAGTGCGAGCTTTGCAAGAGAGTCAAA 22802 30 100.0 35 .............................. TATATCTATAGAGAGATAGATAGATATATAGATGA 22867 30 100.0 36 .............................. GTAATACTATTATAGATAATGACCTACCAAAGATAC 22933 30 100.0 36 .............................. CCCCTAGGAAAATCCCGGGAGTGGCTTAGTTGGTTT 22999 30 96.7 35 .............................G GATAGTCTTGCTCTTATCGGTACCATAACTAAAAG 23064 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCATATGCCCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGTTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACGGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGACATGCGGAAAAAACACGCAGATCGACAGATGAAAAGAATGCCTGTATAATACTATTGTTGAATTATATCTGATGAGGTAAGTAATCTATATATGCTTTTTTGGTTAGGTCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : GTTTACTAACCCGACACTTATTCTTTCATTCCAAATGTTTTTCATTGCTTTTTCCTTCTAGGCTGATTAAGCAAGGATACCCTGGATTTTAATCCGGGGAGGAATTGCACTTTCAGCCTTTTTATATCTTGTCTTTTTCTCTTCTAATTTCTATGATATAATCATTTTCAAACACTTGTTTGGAGGTGAATAATTTGGATCAGGCAGTAACGATTAAAGCCAAGCTCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 86330-85629 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZGN01000052.1 Lactobacillus intestinalis DSM 6629 NODE_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 86329 28 100.0 33 ............................ CTCGATTGGAAAAGTACTTAAAAGTAGAATAAG 86268 28 100.0 33 ............................ TGACCAATTCATTTCAAGAAGTAGAAAAAAATC 86207 28 100.0 33 ............................ TCGCCCCAATTAAAGTAGCAATCGCCAATATCA 86146 28 100.0 33 ............................ CTAAGAACTGATTTTAATGGAATATCAGTAATT 86085 28 100.0 34 ............................ TAAACAAGGAACCTTCGACGACAATGCAACTGTG 86023 28 100.0 33 ............................ CAGCTCACGCTTTGCTGACTGCAGTTCTCCTTC 85962 28 100.0 33 ............................ CAATCTGTACAGTACACATTTAATAATGAGAAA 85901 28 100.0 33 ............................ TTAATCATTGGTCTGCAGATACGGCACTTGTAG 85840 28 96.4 33 ..................A......... TAGTCTTCGTACTTTGTGCCTTTCCATCTTTTA 85779 28 100.0 33 ............................ CGATACATGGATAGATGTCACCATAGATCATTT 85718 28 100.0 34 ............................ TCACAAAGCGAAAAAGTGACAGACTGGCAAGAAA 85656 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.1 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : ACCGTGAAAGAATTCAAAATGATCCACCAGAGCGTGTGATGGTTTTACCTGATTTGAGTCAACATGACCTAGTTTGTTTAGGCTATCAAACTTGGACCATGATCTTAAGCCAGCCAATGAGAGCTTTTTTACTTCAATATGGCAGTCAATTTTCTAATAAAAAGATTGCTCCGTTTCTTTCAGAAGGAGGTTACGGCCCAGTATCCAATTGCTCGATGAAATTATTGCTTAAGATGGTAGTTGATAAAAGTGATGCGGAAGTTGAAATATAGTTCATAGATGTAGTAAAAAACTAACTTGCAATAATGATCATTATAAGATTGATCCTGTTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGATATATATAGAAGAATATTTGATATAATTGAGTCGATGGTTTGATGTGGGATAAAGTACAAACTAAAGAAAAATTGCTTTTTACCAAATTTGAAATGGGTTAATGACGGCGTTTCTTTAGT # Right flank : ATATTTTTAAAATGGAAATCAAAAACTATAATTAAATCAAATCGGATAAAAAAGAGACAAATATTATGAGTATTGTTAGTGAAAGGCTTAGCAGCCTGCGTAAAGCTATGGGGTGGTCACGGAAGCGAGCTATTTCTGAGCTTAATCTTCCTTACCAAACGTATTCCAACTATGAATTAGGAAAAAGAGAACCAGACATTCCAATAATAGCTAAACTTGCAGATAAGTTTAATACAACTACTGATTATTTAACTGGTAAATCAAATGATCCTAGAACATTAGATGAAATAATAAAAGGAATGGGCGGTCTGAAATCATCTTCCCATTCCTTAGAAGTAGATTTAGCCAAGGACCCTGTGGTTTTAGCTTACGATGGTATCCCCGTTAGCGACGAAGATAAAGAAATCATTGAAGCTGTACTGGAACGCCACAATAAGAAAAAAATATGAAGCTGATTTAATCAACTTCCTATTATATGTTATATGTAGCAATCGCTCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //