Array 1 205324-205470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAF010000003.1 Neiella sp. HB171785 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 205324 27 100.0 33 ........................... GCATACCTCACGATAACAATCCGGGCATGGTAT 205384 27 96.3 33 ........................T.. AATTATGAGCGATGGGGCTTCCAGCCTGTGGAG 205444 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 3 27 98.8 34 GTGACCTGCCGCATAGGCAGCTAAAAA # Left flank : CCGTATTTCTCGATGATGAAAGAGGAAGGGCTTTTCAATATGTCTAGTGTGAAAAAGTTACCAAAACAGTTGGCTGAAGTACGCTTTGTGAGAAACCAGACTATTGCTAAAACCTTTGTTGCATCGAAGCGGAGGCGAATGAACAGGGCTATTGAGCGGAGTGGCAGCGATAGTTACACACCGAAAGCTTCAGAAGAGCGAGAGTTCGATTTTTTTCACTGCATACCCATTGAAAGCAAATGCTCACAACAAGAGTTTGTTTTGCATGTACAAAAGCAAGATGCTCTTGAGGTTAACGTCGCTGGTTTCAACTCTTATGGATTGGCAACCAATCAGCGATGGCAGGGAAGCGTACCGAATATCGATTTAACCCTTTTTTCTTAGGATATTAATTTGTTCCTTTAAATCAGAGTGTTATTTGATCTTGCAAACAATTTTTTTTCTAACCCTTTGTTCAATAAACAACTTGATATTCAAGGCTTTGCTGACTAATTTTCATA # Right flank : ATAGGTCAGGAAGAAAGCAACCAAACCTGCTGAACAAGCAGAAAATAAGAACCCACCAATTTCGGTGGGTTTCTTTTTAGGGCTGTTGCTTTGTTTTGAGCTTATCAATGGCTTTGGCCATTCAGCTGAATGGCCAAAGGGGAACTGGTTTGTTTTTCCCAAGTTCAAGTTTGGGAGTGCGAGGTTATTTTTCCATAGGTGGCTAGTCAGCTCGGATTTTTCCTAGATACATCTTCATCGGACAATGAAATTCATATTCCCCCTTTGCAAGTGGCGGTAATGTTAAGCTCACCGACTTGTTTAATGGAAGCTCAACAGAAAAATCTGCTGCCGGAATAACAATAGAGCTTGCACATGGGGACGGATCTTTACGATGAAAAGTGAGTTGAGATTGTTGCATCGCATTAATTTGAATAAAAGCTGGTGTGTATACCCCATTCTCGACGGTAATAACTAGGTTACTTTGTAATTTAACAGCGGGCTTAGGACGATAAAGCCAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGCATAGGCAGCTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 87628-86703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXAF010000008.1 Neiella sp. HB171785 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 87627 35 100.0 33 ................................... TTTCGTTTTCTGTTTGAGTTTAAGCAGCGGTGG 87559 35 100.0 34 ................................... CGAGAATCAGCGTGCACACCCACGTTACAATCTT 87490 35 100.0 34 ................................... TTTAGGCGAGGAGGCCCTAAACGAAAGGTCTCTT 87421 35 100.0 33 ................................... GCTGATCGATTTCTGTACTCTTAGGTACGGTAA 87353 35 100.0 32 ................................... CAAATTTCTTCTGCACATCATAGGGCTTATTT 87286 35 100.0 34 ................................... AATTACTCGTAGCCTCATCTTATGAATTTTTTTG 87217 35 100.0 34 ................................... ATACAAATAACACCAATAAGTAAGCGCTGGATTA 87148 35 100.0 33 ................................... TTATGGCCTTCTTCATCCAAGTCGAAGGGGTCA 87080 34 97.1 34 ...........-....................... AAAAATACAGAGGTGAAGAACGTTAATGTCATCC 87012 35 100.0 33 ................................... CCCCACTTACTTCTGCATCTAAAACCTTACCCA 86944 35 100.0 33 ................................... AACATAACTACAGTAAAAGCTAAGACATTCGCA 86876 35 100.0 33 ................................... TGCATTCTTATGCTGCTTGCTGTTTTTGATAGC 86808 35 100.0 37 ................................... AAAAGCTATTGAATATTTTACGCCGCTAAGCTTTGTT 86736 34 91.4 0 ..C........................G....-.. | ========== ====== ====== ====== =================================== ===================================== ================== 14 35 99.2 34 GTTTGAGATGTGCCCAGTTTTGATGGGATTAAGAC # Left flank : GCTTGGCGATTGCATACTTTGGTGATGTAACTATGTTTGTAGTGATTTGCTTCGATGTTAGTCGCCAACAAGTGCGCAGGAGGTTGACGAAGCTGCTACAGCAATATGGTTGGCGGGTTCAATACAGTGTATTTGAAGTACACCTTCGGCGCAGTCAGTTTAACCAATTGCAACAGAGCACTGAGAAGATATTGGAGCCGGGCGACCGAGTAGTTTTTTACCCGCTATGCGGCAAAGACATTGGTGCTCGAAAATCTGACGGCTGTGGCCAGATTACGTGGGCGCACCAGTGGTACGTGATCGATGAGCAAGTTCGATAGATTGCGGCGTTATAACAATCGCCAGATTAATAATTATTAAGAATAAGATTGTTTTACAAATAGTTATATGTAAATGTCATTGATCGGATCTCCTATGCTTACACTAATTAGTTCAACATCACATTATTTACCGCAAAGCAATCGCGTAGAAGTTGATTCGCAAGGGTTTAAAGGGGTAGA # Right flank : CGAGCGGTGAGTGTTGAAGTGGCCAAGCCACGGAAGGATAGGGGCTTAGGACTTGATAAGTTGTAAGTGTTTGTTGTTCGACAAACTTAGGACGATCGGCTTTGCTGCCTTCTTTGTTTGGCCTCTAACATGGCATTCGCCATTTCAATCAAAAATTTAGGGCAGTGCTCACTCGAAGAAAGCAAACTGAAAGCACGCTTATTGTTGGCTTGAAGACCAAGGAATACAAATTCAGGTTTGTTTGTGCCTGCTAAGTGATAGGCCTGAAACAACCATTCTGCTTCGATTACCCAGAACTCATCGTTAATTAAAACCCCACCATATTGGTTTACTAATTTACCTGCATCACTCCAAAAATGTTCGATTGAGGAATCCATGGCCTTCAGGCTCACCAACAGAGATTGGCCGCTCATCGCGACTCTCCAACAGATATCAAAGGGTAAGCCAGATCTTATGCAACTTTGAAGCAAGTGACCTGTTCACAATCTTGCCAATACCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGATGTGCCCAGTTTTGATGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //