Array 1 362587-362974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIO01000002.1 Raoultella ornithinolytica strain TUM14061 sequence002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 362587 28 100.0 32 ............................ TGGCGGCTCAGGTAGAGCAGGAATCCTGTATT 362647 28 100.0 32 ............................ TCCTTACGACGTTGCTCCTTTGCCCTTTGCCG 362707 28 100.0 32 ............................ GTGCTGCACATTTTGAACAGGTTGCAGGGGAT 362767 28 100.0 32 ............................ AGAAACTGTATGGGTGCCAGCCTGGAGCATGT 362827 28 100.0 32 ............................ ATACCCAACCCCATAGCACGGCCCTCTCTGGT 362887 28 100.0 32 ............................ ATGCTCGCAGCCGCCCCGCAGGAGGTGAATAG 362947 28 85.7 0 .....................C.G.G.C | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGCCAGCGCCGCTCTAGCAGTGCCCCGGCCATGCAACGGGCGCGCTTAACGGTCGGCGGACTGGGCAAACTCCCGCGCCAGCGCCAGAAATGCGGCCAGCCCGGTGGAGGGGGGGCGTCTGCCGGGTGTCCCTGGTGATTCCAGCGCCCGCTGTGCTGGTTGGCTCCGCTTCCCGTCCAGGTTTCGCTGGCGTAACGGCCGGTCACCAGACGATAGAAAATCATGCAAAAGTTCCCGTCTTTCAGGCAGCTAACACGTCTCAATAACGACATTTGTCATGTTTCATTTTAGTCATTTGTCGGGTTGTTGAGGGGTTAATCGCGGGCACGGTTGCCAGGGAGGCAGGATTATGCAGTTGACTACGGAGACCTTTTTATTTGTTATTTTTGTAATCTATTGATTTTCATTAAGAGTAATGACAGCTTTGAAAAAAGGGTGAGATGAGTAAATTTGAGGTTTTTTATATATAAAACAAAGAAGTGAGTTGATATTATTTCA # Right flank : CGCATTAACTCGCTGATTATCAGAATAAATTGCGCCATTCATTTCTGGACGACAAACTGGAAAATCAGGCACGGCCGAAAATAGTGATTCGAGAGGACCGACCGCTGGACGGTCCGCCATTTTCGCTTTATCAGCCCGCCATTCAGCTTTTACTGCTGCAACACCTCAGCAAATTTCGCCAGCCATTGCGGATGCGCGGGCCACGCAGGTGCAGTGACCAGGTTGCCGTCGACATGCGCCTGATCGATACCTATTTCAGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCGCAGGCCGGGTAAGCGCTACAGGTCCGGCCTTTCAGTATTCCTGCGGCGGCCAGCAGCTGCGGGCCATGGCAGACGGCGGCAATGGGTTTGTGCGCGGCGTCGAAGTCCTGTACCAGTTTGAGCACCTCATCGTTCAGACGCAGATATTCCGGCGCTCGTCCACCGGGGATCAGCAGGGCGTCATAGTCCTGTTCTTTTACTGCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 373596-374045 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIO01000002.1 Raoultella ornithinolytica strain TUM14061 sequence002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 373596 28 100.0 32 ............................ TTCTCGTTACTAACACATGGTTATGGTCATGA 373656 28 100.0 32 ............................ GTGCGCACACCACCGCGCGTCATAGCCTGAAA 373716 28 100.0 32 ............................ TCAAGCCCCTGCAGCCGGGTTATCTCTGCGTT 373776 28 100.0 34 ............................ TTGCTCATACAATTCCGGGCTTTGAAAGCTTCAT 373838 28 100.0 32 ............................ GTCAGTCAGACATCCGCCAGGCGTTCGTGGAC 373898 28 100.0 32 ............................ TTGAATAGAAGACGAATCCGCAGCCAGAATCT 373958 28 100.0 32 ............................ AGCGTGGGCATTCCGGTTCGTACGGTCAGCGC 374018 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGCTACCCGCTCACTTTCATCGGGAGTGAGGGTTCGCCCCGCACTTTTGCGACGAGCAACGTTGCGCTCATTAATGCCCGTTACGCGAAGAATGTCCGCTTTAGACATCTCGGTCCATTCATGAATATTATCGAGTACGCTGACCGGTAGCCCCTGATTGAGAAATTCGATCAGTCGTATTCCCCGATTTGCAGGCAAACCGGCATAGCGCCAGAGCGCGTTGTCAGCAGGCTTCTGCTCGGGAACCCATGTTCTCATTTTTTATCTCCTGCTTTCTGTCATTTGTCATGGTTAAGTATAGTCATTTGTCTGTTTTTTGACAGGGCGATTTTTTGACGAGTCGTACATCCCTGGCAGATGCCGGAGACCCTTTTTTAATGTTTATTTCTAATTATTTGATTTTAAATATTATTTTTTACAGGCTGAAAAAAAGGGGGAGAAGCGTCATTATATGAGGTTATCTCGTGAAATCAGTAAATTATGGAGATACTATGTCA # Right flank : ATGACATGTCCTGAATAATTTCAAAGATCTGATGTAGGGGGCAAAAAACACGGGCGTCAAAAAAACCGGCAACCCTTATCAGGACACAATCTCACTGCTGTTTTTAAATCGTGTCGGGACTCACTGAGATAAAGTGATTTGAACAGTTCAGCATCTGAAAGAGTATCGAATAACGATTCGCTCATCGTCGATTCTGAATGAACTTAAATGCCGTGGAACAGGCTGGAATTCTATGGGGTTTACCAGAAAGAGAACGTATGAAAACTTCACACCGTTCGATAACCGACAGACTGTTGCTGATGCCTGCGGAATAAAGAATGGTGCGTCCGAGTGGACTCGAACCACCGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCATTATGGTGCGTTTAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATAAACGCATTATGGTGCGTTCAATTGGACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 186666-184807 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIO01000008.1 Raoultella ornithinolytica strain TUM14061 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 186665 29 100.0 32 ............................. TTACAGAACAAAATCGGGGAAATAGATGTCGA 186604 29 100.0 32 ............................. GTGCTGCTGTGGCAATACAACAGCGCTGACGG 186543 29 100.0 32 ............................. AATAATCGCCCTCGCCGGCCACCACGCGGATC 186482 29 100.0 32 ............................. TTGCCCTGGTCGTCGGCGGCCAGCCTGCACTG 186421 29 100.0 32 ............................. GTAAAACGCTGGTACCAAATGCCAACGTCGAC 186360 29 100.0 32 ............................. TCTGCTTGATGCCCGGACGCGACGCCGTTCGA 186299 29 100.0 32 ............................. CGCGGTCTCGTTTGTGGGGTGCGCCGACGCTC 186238 29 100.0 32 ............................. CACTCGTGCGCTGCGGTACCTTCCTTTGCCCC 186177 29 100.0 32 ............................. GTTGGCACGTTGGGCCGTTGCTGGCAACCATG 186116 29 100.0 32 ............................. GGATGATGCCTGACCGGATACGCCGTGATTTA 186055 29 100.0 32 ............................. TATCACTGGCGAAAACCGAGTAACCCGATGAT 185994 29 100.0 32 ............................. GAGCAGGAGCTACGGCAGCGCCAATGGCTGCC 185933 29 100.0 32 ............................. AACCGCATAGGAATCGCGCCAGCAGGTAAAAC 185872 29 96.6 32 .....................G....... CAGGAGATGTTCTGTCGTGAGTATCTCGTTGA 185811 29 100.0 32 ............................. GCAACAGCGCGATCGGTATGGGCCACATGACC 185750 29 100.0 32 ............................. AACATTTAACTGGTACTTATTGATTGTCGGGA 185689 29 100.0 32 ............................. CCAGAGTTTGCAGATAACTACGCACTGGCAAT 185628 29 100.0 32 ............................. GCTAAATGCTATGCGACGAGCTGGTTTTCCGG 185567 29 100.0 32 ............................. CGGTCATGCTTCCGGGTCTCCGGGTCCCATCG 185506 29 100.0 32 ............................. GAGATTTACCCCGTTGTCTCCGGGCTGAATTT 185445 29 100.0 32 ............................. TATGGATTCCGATTTCGAGAATTACAGTCGGC 185384 29 100.0 32 ............................. CCGCCAGCGGGGCGAATGGTCAGGTGCTGGGG 185323 29 100.0 32 ............................. TTGCGGGATTAGCCTTTGGGAGATTCACAACA 185262 29 100.0 32 ............................. AAACAAACTGAGGCGTTGAAAACCGCACTTGA 185201 29 100.0 32 ............................. CTTGTCATATCCTTTACCGTTCGCAATATGCA 185140 29 100.0 32 ............................. TCTGGTACCGGTTCGTCGTCATCCTCCGGGAT 185079 29 100.0 32 ............................. AAAACTCCCATTCAGCTTGAATTTACTGATCT 185018 29 96.6 32 ........A.................... GTGCGACCGGGCCCATCCACCATCGGCGGTCC 184957 29 100.0 32 ............................. ATGGATGCCGTTTCACAGGTAACTCGTGGTAA 184896 29 96.6 32 .........A................... GACGAGAGCTATGCCGCTTTCGAGATGCCGAC 184835 29 89.7 0 ......................A...TA. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTCATTGAGGATGTTCTGGCGGCAGGGGAAATTCAACCGCCAGATCCCCCTGAAGATTCGCAACCTGTTGCGATCCCACTTCCTGTCTCTTTGGGAGACTCTGGCCATCGGAGTAGCTGAAGATGAGTATGCTGGTCGTCGTGACTGAAAATGTACCACCACGACTGCGAGGAAGGCTGGCAGTCTGGTTGCTGGAGGTTCGTGCGGGGGTTTATGTTGGTGATGTTTCAGCAAAAATTCGCGAGATGATATGGCTACAAGTTACTACTTTGGCACAAGAAGGGAATGTCGTAATGGTCTGGGCGATGAATACTGAATCAGGATTTGAATTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTGGATGGCTTGAGATTGGTGTCATTTTTACCCATTAAAATTCAATAAGTTAGTGTTCTTTAAAAATACGGAAATTTTGGTGGAATTTAGTATGTTGAAAAAATCCTTTTAGTTCATATAGATATAATTAGA # Right flank : ACCGGCTCTATTAGCTATGCTTCTCTGCCTTCGCCAGCTCTTTTATCAGCGGCAGCATCACCTTGACGACATCGCGGCTGCGGCGTTCGATACGCCCCGGCAGAGCTTTATCAATATACTGCTGGTTATCGAACTGCACGTCATGCCAGCGGGTTCCTTGCGGGAAGGCGGCGGATTTGTTGCGCTGCTGATGGCCATCTTTCTTACCCGGCGACCAGTTCGTGGCCTCCACGGACAGGACCGGGATCCCCACGCTATCAAAAATGCTGGCGTCATTACAGCAGCCGGTCCCCTGCGGAGAATCATGATTGAGGCCTGGATGGGTATAGGCGGCGATCCCTTTGCTGCGCGCAATGGCCAGCGCGCGGTCTCGGGTGAGTTTGCGAATCGAGGCGGGAGTGCTGCGCCCGCTATTAAAATAGAGCTTATCGCCAACCACCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCCGCATCGTTCATTCGTTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //