Array 1 94591-93465 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITQ01000018.1 Cronobacter sakazakii strain MOD1_Jor109 csakJor109_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94590 29 100.0 32 ............................. CATTTTCTTTATCACACAACTTTAATTGCCCT 94529 29 100.0 32 ............................. TGCTCTCGTTAGATTTAAACCAGCTGACCAGG 94468 29 100.0 32 ............................. CTGACACTGACGATAGTGAGGAGGTAGACGAG 94407 29 100.0 32 ............................. TTACCCCCGCATCCATTGAACCGCTTTTAAAA 94346 29 100.0 32 ............................. AGCTCAGCGGCGCAATTATCGATTTCCGCGGC 94285 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 94224 29 100.0 32 ............................. ATGGATTTTATCGACCGCCCAATTGATTATTA 94163 29 100.0 32 ............................. CGTCCAGCAGAGACAGCAGAAACGGCAGCAGT 94102 29 100.0 32 ............................. ACAAGCCGCAGCGGCGGCGGGGGGTTATTTTG 94041 29 100.0 32 ............................. GGGGCGGTGTTGTTCTTTAGCGCGAAGCGCTG 93980 29 100.0 32 ............................. CTGTCAATGACACTGGCTCCCCGACCTTAACG 93919 29 100.0 32 ............................. AGCAAAATAGATAACGCACAGAACGAAAACCT 93858 29 100.0 32 ............................. CCGAACATGACCTGATGCGCCTGGCTATCGAT 93797 29 100.0 32 ............................. GCTGCGCTTGGCCTGCAATATATCGGTACACA 93736 29 100.0 32 ............................. CCGGCAGCGCCGTAAAAAGGCGCGCTGATTGC 93675 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 93614 29 96.6 32 ........T.................... CGACACGATCCGCCGCCTGGGTTACGAAAGCG 93553 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 93493 29 93.1 0 .....................G......A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTACATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122303-121603 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITQ01000018.1 Cronobacter sakazakii strain MOD1_Jor109 csakJor109_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122302 29 100.0 32 ............................. CTGGTCAAAGCCGCACAAAAATCCCATGTCGA 122241 29 100.0 32 ............................. CGCAACGCGCTGCACCTGACCAGACAATTTTT 122180 29 100.0 32 ............................. CCTTCGCTATCGATCACGCTCAGATGGGAATC 122119 29 100.0 32 ............................. GTGTTAACTCAAATTCATCGTCCCACGGTGGG 122058 29 100.0 32 ............................. ACCCGCCAGGCTGATGAACTCGCAGACCGGCA 121997 29 100.0 32 ............................. TCGGAATCCTATGGTCAGCCTGTGATGTACAA 121936 29 100.0 32 ............................. CGGAATACAAAATTTTCGTCAGCGTTCGCTGT 121875 29 100.0 32 ............................. CTCACACTGATTCCATTCAACGCAACATAGGA 121814 29 96.6 32 ...........................T. TTTGCCACCACAATAATCATTCCAGTTCTCAT 121753 29 96.6 32 .........A................... TCTTCCAGGAGATCGATCCCTTGTCTCAGAGC 121692 29 93.1 32 AT........................... TACGGCGCTTGCAGCTCTTGCGATCATTATGG 121631 29 86.2 0 .T...................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTTGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAACGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : ACGCCACCTGATTCACGGCGCTAATGTGAAATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTGACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //