Array 1 126213-124903 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVVT01000002.1 Escherichia coli strain NIFDS_EC2018_I235 EC2018_I235_Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126212 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 126151 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 126090 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 126029 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125968 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125907 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 125846 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125785 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125724 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125663 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125602 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 125541 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125480 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 125419 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 125358 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 125297 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 125236 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 125175 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 125114 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 125053 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124992 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124931 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153054-151762 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVVT01000002.1 Escherichia coli strain NIFDS_EC2018_I235 EC2018_I235_Contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 153053 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 152992 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 152931 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 152870 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 152809 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 152748 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 152687 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 152626 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 152565 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 152504 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [152478] Deletion [152464] 152462 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 152401 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 152340 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 152279 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 152218 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 152157 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 152096 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 152035 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 151974 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 151912 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 151851 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 151790 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //