Array 1 599438-607630 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJCW01000001.1 Pseudoxanthomonas winnipegensis strain NML 171590 NML171590_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 599438 28 100.0 32 ............................ GAGTGCGGCGGCCTTCCCCGCGCCTACGCTGC 599498 28 100.0 32 ............................ ACCCTGGACAACGGCGAGGTCTATTCAGCTTG 599558 28 100.0 32 ............................ TTGTTGCCGATGGCCTCCAGTAGCTTCGGCGA 599618 28 100.0 32 ............................ CAGGTGATTGGGCTGCAAGCTCTCGTGAGGTC 599678 28 96.4 32 .................T.......... TCCGCGGCGGCTGGGAACCTATGAAAGTGCAG 599738 28 100.0 32 ............................ TACAAGGGCTTCGATAAGGATCTGGCCTGCCA 599798 28 100.0 32 ............................ TTGAGACCTGCAATAGGCTTCTGCCTCGTCAT 599858 28 100.0 32 ............................ GTCATGCGCGGCGGCACCCGAATCTACCCGTC 599918 28 100.0 32 ............................ AGTGCCGCCTCGGCCGCCGGCGAGATCCGGCC 599978 28 100.0 32 ............................ TTGATCAGTGCGCTGGTGCGCTTGCGCTTGCT 600038 28 100.0 32 ............................ TTGACAAGCTCGGCGTTGGTGACGAAGGGGAT 600098 28 100.0 32 ............................ TCCGGTCAAACCGAAGGTGAAGGTCAGGTTGG 600158 28 100.0 32 ............................ ATGAGAATCGCGGCATCGCGTTTGGTCTGAGC 600218 28 100.0 32 ............................ CTGCTGGAGGCCCCGAAATGAGCGCCCTACTC 600278 28 100.0 32 ............................ GGACTGGAAGAACGAGCCGCATCGGTCCCACC 600338 28 100.0 32 ............................ TGACGGCCTTGAAGGCCGCGAAGGAGAAGGCT 600398 28 100.0 32 ............................ AAGAAACTGCGCGAAGCCGAGGAAGACCTGAC 600458 28 100.0 32 ............................ TGGACCTTTTGGCCCGCCTTGAAGCCGGCAAG 600518 28 100.0 33 ............................ CAAGGCTGCCGCCCCTGCACCCGTCAAGATGAT 600579 28 100.0 33 ............................ CACAACAAGCCCGAAAACTGGCTGACCCTCGAA 600640 28 100.0 32 ............................ AGTTGCGAGGCGGCGTGCTGCGCCGGCCGTGC 600700 28 100.0 32 ............................ AAACTGGTCCGGGTTGCAATCCGGGCAGTCCG 600760 28 100.0 32 ............................ AGCCCGGACACCGTGCGCGTCCTGGTCAACAT 600820 28 100.0 32 ............................ AACTACGACAACGAGATCGAGGCGCTGCAGGC 600880 28 100.0 32 ............................ AGGTCGCTCAGCTGAGCGAGGGAAGCCTGGCA 600940 28 100.0 32 ............................ TTGAGCAGGATCTGCGCGACGAACGGCAAGCT 601000 28 100.0 32 ............................ GACTGCTGCTCGCCAATTCCGGAGGTCTGTGA 601060 28 100.0 32 ............................ TCGGCGAGGACCTCCTCCCGGGCACCAAAGGC 601120 28 100.0 32 ............................ AATGATTCCGGATGGACGCGTCCTTGGGCTGT 601180 28 100.0 32 ............................ CCGCGCCGCTTCATGGGCAAGAAGCTCTACGA 601240 28 100.0 32 ............................ ATGGCATGCGGCTATGAGGGCAAGGCCATGGG 601300 28 100.0 32 ............................ AACCAGCCAGCGGCACTTGGTGAGACAGCATG 601360 28 100.0 32 ............................ AAACGCGGCCCTCAGTGACCGCTTCCAGCCAG 601420 28 100.0 32 ............................ TTCCAGTTCCAGCGTCTCGCCGACCTTGTACT 601480 28 100.0 32 ............................ GCCAAGTCATCGGCGTGGACAGGCGCAGGGGC 601540 28 100.0 32 ............................ ATCTCGGCAGCCGAGCCAGTCAGCACTTCTCC 601600 28 100.0 32 ............................ TCCCAGCCACCGCGGCCCTTGGCACGTGCTGC 601660 28 100.0 32 ............................ GTTGGCATCCTCAACATGCGCGGTCGCGGTGC 601720 28 100.0 33 ............................ TACTATTTCCAGGGCGACCGCATGCGCCTGGAA 601781 28 100.0 32 ............................ ACCTCGCCGGCCAGACGGTCGATCTGCCCGAA 601841 28 100.0 32 ............................ ATCCTGGTCATCGCCGGCGCCTTTATCGCCAA 601901 28 100.0 32 ............................ GACTTGGCCGCAAGCCAGAAGCTGCTGCTGGA 601961 28 100.0 32 ............................ TGGATCATCCAGGCCGGCGTGGCCATCATCGC 602021 28 100.0 32 ............................ AAAGGCCCAGGCCGGGAATGGAGGTGGGGCTT 602081 28 100.0 33 ............................ TTCCTGCGCGGGATCCCACTCGCGAATCAGGAT 602142 28 100.0 32 ............................ GCTGGAAAGGCTGGGTCTTGGGCCCGGCCAGG 602202 28 100.0 32 ............................ AGTTCGCGAAAGAGACCTATAGCCTCTACTGC 602262 28 100.0 32 ............................ AGATCGGACAAACGTGGATGCTTGTGAACCCA 602322 28 100.0 32 ............................ GCCATGGGAGTTGGTGCGCCGCAGTTTGATGC 602382 28 100.0 32 ............................ AAGCCGACCGTAACGCTGGTGATGCCGAAGCC 602442 28 100.0 32 ............................ CGTGAGTCCTGTGACCGTGTAGCTTCCATAGG 602502 28 100.0 32 ............................ ATTGGCCGCTGTTCTTCGAACGCCACCCTTCT 602562 28 100.0 32 ............................ CTGGTGCGTAGCCGAAGCCAGGATCAACGCCC 602622 28 100.0 32 ............................ GCGAGCAGCGCGGAGATCAGCTGCGCGAGGAA 602682 28 100.0 32 ............................ TTGTAGTCGCGCACGACCGGGTCAGTGGTCTC 602742 28 100.0 32 ............................ TCAAAGCGCACTTGGAAGCGTGCCGGGCTAGC 602802 28 100.0 32 ............................ TGATCGACGCGGCGCCCACGAAATCACTGTCG 602862 28 100.0 32 ............................ TCTCCGCAGGACGGTCCTTCGTGATCTTAGGA 602922 28 100.0 33 ............................ TTTGGCGAGAGCATCGGTAGCGCCGTGCGGACC 602983 28 100.0 32 ............................ TTGGCGGTTCGGTTCGGCACGGCGTTCCCGAT 603043 28 100.0 32 ............................ ATCGAGAGGCACTACACCGATGCGAACTGATC 603103 28 100.0 32 ............................ CGCAACATTCATGCTGTAGCGGAATCTCTTAC 603163 28 100.0 32 ............................ TCGGCCAGGCGCGTAAGCGCGTCGAGGGGCGC 603223 28 100.0 33 ............................ AATCGTGGGAATCGGCCGGCCGGCTCGAAGTGT 603284 28 100.0 32 ............................ TTATCCACACCCCGCCGGGTAAAGCAGTAGAA 603344 28 100.0 32 ............................ GAACTGTGCTGCGTATTCCTTGCCCACTTCGG 603404 28 100.0 33 ............................ TTGATCACGGCCATGGCACGCCTAAGCTTCTCC 603465 28 100.0 32 ............................ AGGCAGTACGTCCGGGCGAATTCTTCGGGTTC 603525 28 100.0 32 ............................ ACCAGCACCGCCACGGCGGTGGTGAAGGATGC 603585 28 96.4 33 ..........................G. CTTGCCGCCAGCCTTGACGACCTTGGCCGCCGC 603646 28 100.0 32 ............................ GCGCTGGGCGGCGTGGTGGGCTACTTCTTCAA 603706 28 100.0 32 ............................ AGGTCCAAGGGCAGCAGGCGCCCCGTCTGGCC 603766 28 100.0 32 ............................ CTGTGGTCGGACGTGCCGGCGGACTGGAACGC 603826 28 100.0 32 ............................ TGCGCGTTCTGCTTTCTGAATCGTTACGACGG 603886 28 100.0 32 ............................ GCAGCCGCAGCCCACTCGGCGCGGGAGGTGCG 603946 28 100.0 32 ............................ ACTGGGTCGGGCCGGACGGCGAGCACGTTGAT 604006 28 100.0 32 ............................ AAGGTCACGCAGGAGACGGACAAGACCAAGAA 604066 28 96.4 33 .....................C...... CAACACATCAAACTAGTTCTGGATTCACTCCAT 604127 28 100.0 32 ............................ TTGCAGTAGATGCGGTCACCTGCAGCCAGCTC 604187 28 100.0 32 ............................ GTTCCGGACCACCACCACCGACGAGCATGGTA 604247 28 100.0 32 ............................ AGAATGCGCCGGCGGCGCGCATGCCGTGCGCC 604307 28 100.0 32 ............................ GTCAGGTAGCCCGGCTCGGCCGCCTCGGTCAG 604367 28 100.0 32 ............................ TCGGCTACAAGCCCATTGATGCCGTCCAGATC 604427 28 96.4 32 ........T................... TTGGAGGCATACCGCTACCCGGGCATGCGTCA 604487 28 92.9 32 .......A...................T GCCGAGAATGTCACCAATTCTCATCGCCTGGT 604547 28 100.0 32 ............................ TTGATGCCGTCCGCCCAGTCCGGCGTCCAGCC 604607 28 92.9 32 .......A................A... GCCTGGATCTCCGCGACTTCGAGATCTTGGGC 604667 28 100.0 31 ............................ AGTCCAGGTACTGCCTGACCATCAGTGGCTG 604726 28 96.4 32 ....A....................... ACTGCGGCCAGGGCGTCTTCCTGCCGCGCGAG 604786 28 96.4 32 ....A....................... AGCGGAAGCCTGCGGGGAGGGTCATCCCCGAA 604846 28 92.9 32 .C..A....................... TCCGGGAACAGGATGTCGCGCGCGCGGACCTG 604906 28 96.4 32 ...............C............ ATCAGCGCGGCGTGCATCTCCTCGATGCGCTC 604966 28 100.0 32 ............................ ACATGGAGCGCCGCACCTTCGAGCGGATCTAC 605026 28 96.4 32 ...........A................ GGCAAGGTCCTTGTCGGGATGGAAGGAGGCGC 605086 28 100.0 32 ............................ TTCAGTGGAACCGACCGGCGAACCCGAACATC 605146 28 96.4 32 ............A............... AGCTTGTCCGTGCCGGTGGGCATGCACCCTTC 605206 28 100.0 34 ............................ TGGATGCCGAAGTCGAAGGCCTGTCCGATGAGGG 605268 28 96.4 32 ....................T....... ACATGATCACAAGCCGCAGCGCAGGGCTCTCG 605328 28 100.0 32 ............................ TGGTGGGCGACATGCTGAAAGACGCAGCCGCC 605388 28 100.0 32 ............................ TGGTTCCAGGCGCGCACACTGGAGCGCTGGTA 605448 27 96.4 32 ...............-............ CCCTCGCCGCCCGCCGACGCTGGCCGGGGTGA 605507 28 96.4 32 .G.......................... TCCTCGGAAGCAAAGCGCAGGGTCGGCCTGAA 605567 28 100.0 33 ............................ TGTGTGATCGGCGGCCGGCAGACTGGTTTGGCT 605628 28 92.9 32 .......A......G............. TCTCCAAAGATCGCTTCCGTACCGGACGCCTT 605688 28 96.4 32 .............C.............. ACGGCGGTGGTAAAGGATGCCTCCGGCAACCC 605748 28 96.4 32 ...........T................ CAGGACATCGAGGACCTGCCGGATGAGGTGGT 605808 28 96.4 32 ...........T................ TCGAGCTGATCGAGGAGGGCGTCGATCTCGGC 605868 28 96.4 32 ...........T................ ACATCGGGATGACCACGCCAGCCACGCGCAAC 605928 28 96.4 32 ...........T................ TTGGTACAGCGCCGACAACGTGATCGGGAACC 605988 28 96.4 32 ...........T................ GCAGAGAGCGCCATGCAACGTGCTGAGAGGGG 606048 28 100.0 32 ............................ GCAGAGAGCGCCATGCAACGTGCTGAGAGGGG 606108 28 100.0 33 ............................ CTGATGCTGGACCCACGAATTGAGCCGCGCGCC 606169 28 96.4 32 ...........T................ TGTCCGGTAGCGCGGACAACGTCGAGCTGTCT 606229 28 92.9 32 ........G..T................ GACCAGATGATTGCCTTGTGCTCGACCGACGA 606289 28 96.4 32 ...........T................ ATGCGCTCCCGCTCGGATCGAACGCGATGCCG 606349 28 96.4 32 ...........T................ ACTGGCTGGTGCCGCAGCTTGAGGCGATCTAC 606409 28 96.4 32 ...........T................ CTGACCCCGCGACCGGCGGCGATCCGTGGACC 606469 28 96.4 32 ...........T................ AACAGGAGGCCGACCGCGACCTGCCCAAGCTT 606529 28 96.4 32 ...........T................ TCATCCCACTCTGGAAACCAGGTTTTAGCGAT 606589 28 96.4 32 ...........T................ TATGAGGCCGCGCGCAATGCGTTGACCGCGCT 606649 28 92.9 32 ...........T.....G.......... GGCCAGAGAACCGCCCTCGCCTTCCTGTTCGC 606709 27 89.3 31 ...........T............-..T CGTAGGCCTCGTCCTTGGATGCAAGCTGGGT 606767 28 96.4 32 ...........T................ ACCTGGCGCAGGCGAAGGCCTATGTAGCAGGC 606827 28 96.4 31 ...........T................ GGCTTCGCCAGCTGGCCGCGCCGGCCGACGT 606886 28 92.9 32 ...........TA............... ATGACCCCCGCGTGACCCGCAACCCGGCCTAC 606946 28 96.4 32 ...........T................ TGTGCAAAAGCAAGCATCGGCACCGTAGCTGA 607006 28 100.0 32 ............................ CATTCGTTCGTGCGCGGCGCGTGGTCCCAGGC 607066 28 100.0 32 ............................ TCAAGAAGGCCGGCTATGTCGGCTGCGACGTG 607126 28 96.4 32 ...............T............ AGCAAACCGCACCTGGTCGATACGGTCCTGGA 607186 28 100.0 32 ............................ AGAGCGTTACTGCTCCGCCGGCGAACTGGCCG 607246 28 96.4 32 ...............A............ CGGTAGAAGTAGGCCCAGCTACGGCCGCGCTG 607306 28 100.0 31 ............................ TGAACGTGACCCCGAAGACATCCGGGATGGC 607365 28 96.4 32 ...............T............ AACGTCGGGCGCGGCTGAAAGAACCCGGCCAT 607425 28 100.0 32 ............................ GAGAACCGCAGAGGGCGGCTGCACGCGGATCC 607485 28 100.0 31 ............................ GCGCAACGTTGCCCAGGCCTGGCATGGGGCG 607544 27 92.9 32 .......-.........A.......... GAGACGGTCGGCCCGGCAACGTCGCAGCCTGT 607603 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================== ================== 137 28 98.7 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGCCCTGCGCGGACTGATGGACACCGCCTGGCTGGGTGGCGTGCGTGACCACCTCCGCATCGGCGAACTGGCGCTCGCCCCTCCGCACGCCGAGCATCGCACCCTGCAGCGACGGCAGTTCAAGACCAGCGTGGACCGCCTGCGACGTCGCCGCATGCAGCGCAAGGGCGAGACCGCCGAGCAGGCGGCTCATGCAATTCCCGAAAGTGTCCAACGGCAACCCGACCTGCCCTATGTGCATCTGCGCAGCAGCAGTACCGCCCAGCCGTTCTGCCTGTTCCTCGCCCGCGGGCCGCTGCGCGCGCAGCCGTCGCCAGGCTCCTTCAACAGCCACGGCCTGAGCAGCACCGCGACCGTGCCCTGGTTCTGACCCTTTTCTCCGCGACGGGCGGAGGCGCTTTGACAATCAAGCACTTGGCCACGACCCACCAAAAAAGGGGGGCGTGGCTTTTCTGCGCCTATCTTTTTTAGATTCAATGATTTAGGGAAGCACGTGTCTA # Right flank : GGTCAAGCAGACCGACAGCACGGCGGCCCAAAAAAAGGTCCGTTACTCAAGCCCTCTCACCCTCGGGCTCAGCAATGATCACCTCAACCCCCATCCGCTGCAGCCCCTCCCGCGTGGCGGCGTCGATGCCGGCGTCGGTGATGATGGTGTGCACCTGCTCCAGTTTGGCGATGCGGTGCAGGCTGACCTTGCCGAACTTGGAGGCGTCGGTCAGCACGACCACGCGGCGGGCGTGTTCGACCATGCGCTGGTTGAGGCGGGCCTCGGAGGCGTCGTGGGTGGTCAGGCCGAACTGCAGGTCCAGGCCGTCCACGCCGAGGAACAGGGTGTCGAAGCTGTAGGCGTTGAGGCTCAGCTCGGCCTGGTTGCCCTGCAGCGACAGCGACTGCTTGCGCAGCTGGCCGCCGGAGAGCAGCACGTTGACGCCGGGCGCGGTGGCCAGTTCCCAGGCGATGTTCAGGCCGTTGGTCATCACCGACACGTCGCGATGGCCGTGCAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //