Array 1 733510-734206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006953.1 Mannheimia varigena USDA-ARS-USMARC-1388 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 733510 32 100.0 35 ................................ ATATCCGCATTCCGCTCACGGAAAGGGTGATCGTG 733577 32 100.0 34 ................................ GACTTCACCACAAACCCTTTGGCTTTCATTGTTT 733643 32 100.0 35 ................................ TTCTTTGGCGATTTCTCCGCTCATTTCAACGAGAG 733710 32 100.0 34 ................................ AATTTCTGTGCCTTGGGTAGCATCTTGCATTTTG 733776 32 100.0 35 ................................ ATCGAAAAATCAAACAATGAGCAACACAAAGCAGA 733843 32 100.0 34 ................................ CAACAACTCACGCAAAAAATGATTAGCGTGGGTG 733909 32 100.0 34 ................................ TCGTCACCTACATACCAACGTCCTCCACGCCCGT 733975 32 100.0 34 ................................ ATAGCCTAGGCTTACACCCTCATTTTCCTGCCGT 734041 32 100.0 35 ................................ TGCGAATCTGTCATAAGTCATCACCGGTACGGTTG 734108 32 100.0 35 ................................ AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAA 734175 32 68.8 0 ..G.TT..C...A...A..CA.A........T | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.2 35 GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Left flank : GCAAAGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGACCCCGAAGGGCAGAAACGCCTTCGCCATATTGCCAAACATTGCCTCGACTACGGCGTGCGAGCCCAATATTCCGTATTCGAATGCGATGTCACCCCCGACCAGTGGGTCAAGCTCAAACAAAAACTGCTGGCGACTTATAACCCTGAGCTTGACAGCCTCCGCTTTTATCACCTCGGCAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACACTGATTTTGTAATATGTAGTACATCGCTAACCTGTTGTTCTCACCAAAACAGGGGGAGGTTAGCGAACATCAAAGTTCTTTAATAATCAATAAGTTATAAAAAGTATTGGCTCAATTTGAATTGTGCTATACTAAAAATACTTCCTATACAGGCGTTTAGCGAAAAGGCGGTAACAAAGCCTTGCAGCACAATGCTTTTGCATATAGGGA # Right flank : TCTTGGCATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTACTATTATTGAACCGTTGCTTTAGCACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCTATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTCTCTACGGCGTGAATACGTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCCAAGTCTTTTTCATTCTCTTTTGGAATAATAACCGTTGTAATACCACCTCGGTGGGCTGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATTGCGACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAATTAAAGCCGTACACATTGCGATACCCGCACTAGGGCCATCTTTCGGCGTTGCACCGTCTGGAACGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 969371-970734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006953.1 Mannheimia varigena USDA-ARS-USMARC-1388 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 969371 32 100.0 35 ................................ TAAGACGGAGAAAACCACCAAACAACTTGCCAAAA 969438 32 100.0 35 ................................ CAAGCCTGATACTTTGCCTTTTACTAGCTGAACAA 969505 32 100.0 35 ................................ AGACCGCAGGTGATTCGCACCGCTCAGCGTGGTTG 969572 32 100.0 34 ................................ TTTGCTGTTGGGGATATAGCCACCAAGAGCAGTA 969638 32 100.0 35 ................................ GTTGATGCCTGTAATACAACATACCCGTTTTAGGG 969705 32 100.0 34 ................................ GCTGGATAGCGTAAAAGAAAAACTAATCCCTGCT 969771 32 100.0 34 ................................ GTAGAGTTTGTTATCTGAAATAACTAATAATTGA 969837 32 100.0 35 ................................ GATTGCCGAAGGGGATAACTACAAGGCAGTGAAAG 969904 32 100.0 35 ................................ AAAGGTTTTATTCTCAATCGACATTGCTTCTGCTT 969971 32 100.0 35 ................................ TTAACCCCATTACCTAAAGAGCTAAAAATTTGTGC 970038 32 100.0 35 ................................ CAATAGAATGGATTTAATGTGGTAAATATCCCCAT 970105 32 100.0 35 ................................ CTCCACCGTGTCTTTGGCAAAATAACGCAAATTTC 970172 32 100.0 35 ................................ TGGTGGAATTGTCGGATTATTTTGTGTAGGATTAA 970239 32 100.0 34 ................................ TTAGCCTCTTCGCCTTTGGCATTTTTTATCCGCT 970305 32 100.0 35 ................................ GCTATCGGTCATCATTGAGCAGCTCGGCTTATCCA 970372 32 100.0 34 ................................ ATCAAAAGGTCTTTCGGTATGTACTGTTTTTTCC 970438 32 100.0 34 ................................ TCCTACATCGGCATTGATGCAAACGGCGTAGGTT 970504 32 100.0 35 ................................ CAGACGTGGCGAAACAAAAATTAATTTGCCCGCAG 970571 32 100.0 34 ................................ AATTGCGGTGATTGTGCCTTTTTGTTTATGGATT 970637 32 100.0 34 ................................ CCAACGGACAATATCAAAGAGGTATTGGGGCAGG 970703 32 81.2 0 .............C.......CA.C..A...T | ========== ====== ====== ====== ================================ =================================== ================== 21 32 99.1 35 GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Left flank : CTCGCAAAGGCTTAACCATTCAACGTTATAAAGGATTAGGCGAGATGAACCCGGAACAATTATGGGAAACCACGATGGATCCGGTCGCTCGCAAAATGTTGCAAGTAAACATCACCGATGCTATCGCTGCCGACAAACTTTTCAGCACCCTAATGGGCGATGAAGTTGAACCACGCCGCGATTTTATCGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTAAGATCCTCTATTGAGAAATAGAGGATTTTTTATAAAAATTATCTAAGTATCCTACAAATACCATTGTAATATATGAATTCGCTAACCTATAGTTCTCATTAAAATTATAGTAGGTTAGCGATTTTATTTATTCTTTTATAATCAATATGTTATAAATTTTACCTTAAATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGCACTAATAGGCCTTGTAGCATAATGATTTCTTATATAGGGA # Right flank : TTTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGGTACACTTCATTGAAATGAATCATTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACCCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTAGATATTGGTTTAGAAAAAGCGGCTTTTTTGCACGCCTCCGATATTGTTTCTCATACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCGAGACTAACTACTGATATCACCTTGCCTTCTCGTTATTTGGTTTTTATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //