Array 1 2084232-2083734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045072.1 Paracoccus kondratievae strain BJQ0001 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2084231 32 87.5 34 T.........ATA................... GCGATGTTCGTGATGAACTTCTGGCGCTGCCAGA TAA [2084224] 2084162 32 100.0 34 ................................ GCGCACCTATGCCGAACTGCCCGACGCCCTTGTC 2084096 32 100.0 33 ................................ TGATAAATTCGACAAGGCTAATCAGGATAAACT 2084031 32 100.0 34 ................................ TTCCACCGTCACAGGCGCGACAAATTCGCCATCC 2083965 32 100.0 34 ................................ ATGCTGATGATCCAGCAAGGGCCGCAAGTAGCGC 2083899 32 100.0 34 ................................ CCAAAGATGGGCTGCGATCCCGCCGCCGATCTGG 2083833 32 100.0 36 ................................ TGTATAAGCCCCCCCCTCGTGCGGACCCCGCGCGGG 2083765 32 96.9 0 ...........................T.... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.0 34 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : ATCGCCATGGCGCCGACAGCAGTATGGAGCGCCGGTTTGAGACCTTCCGCGACCCGATCGCGCCGGAAATCTCGGCCGCGGCCAGCCCAGATTTTGGCCCGGTCGCCAGGGAGCTGGCTAAGCTGATGCGCCCGGCCTCTTGCGGCTTTGACCTGTCGGTCGCGGCGCGCATGGTGTTTTCCTGTCTGGTTGACGCGGATTTCCGTGACACCGAGGCATTCTATGCCGGGCTGAACGGCACGCAGCCGGATCGCGACTGGCCGGCACTGGCCGATCTGTTGCCGGAATGGAGGAGCGCCTTCGATGCGCATATGGCGGGGTTCGACCAGGGTGGTCCGATCAATCGCCTGCGCGCGGATATCCTGGCGCATGTCCGGAAGTGCTCCGCGATGACGCCGGGTCTTTTTACGCTGACCGTGCCCACCGGCGGTGGCAAGACGCTGGCCTCGTTGGGTTTCGCGCTGGACCACGCGGTACGCCACGGGCATCGCAGGATCATA # Right flank : ACGGCAGAGGAGGTCCCGTGACCATCGCTGGTTCGGCAGCAACGGCACTGGTATGGGGGCCGTCTGCCGCACGCCCGCTTGCGACCGCGCCTGCGCCGCACCGACAGACCTTCCTCCCGGTAAATCCGGCAGAGCTTCTTCTCGTTCATGACCATGCCCTTGTGCTCCAGCATGATGCCCACGCGCCGACAGCCGAAGCGGCGGTGCCGCTCAGCGATCTTGCGCATCTCCCCACGGAACTCCGGGTTATCGGGCGGCCGCTTGCGCCGCACCGTTTTCGGATCGACGCCGATCAGAACGCAGGCGCGGCGTTGAGAGATCGGATGATCCCTCATCGCCCGCAGCACCGCGTTGTCAGGCATGGCATCGGCCAGCGGGCGCTTGAGCTTCGCATTCCCGTCCTCAAGCTGCTTCAGCCGCTTGGCGTCAGACAGCTCCATGCCGCCATACTTCGCCTTCAGCTTGCAGAATGTCGCGAAGCTTAGCCGATGCTTCCGACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 276432-276099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045073.1 Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 276431 29 100.0 32 ............................. GCAGTCTGGCGGTCGGTGTGTCGAGTGTCCAT 276370 29 100.0 32 ............................. CAGCAAGCGCAGGCGATCCTGCAAGCCCGGAT 276309 29 100.0 32 ............................. CTCCCCCGGGCGTCAGAAGGGCCAGAGGCCCA 276248 29 100.0 32 ............................. CGGATCGCCCCGCCCTTCTTCGATCCCAGCAC 276187 29 100.0 32 ............................. TTGCCTTGAGCCGGCGTCCCCGACCTCGAGGC 276126 28 93.1 0 ........-...................T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GGCTCCCCCGCACCTGCGGGGATAGACCC # Left flank : GCCATCGCCCGGATCGCCCAGCTCTACGCCGTCGAGAAGGAGGCCCGAGGCTCGCCGCCTGACCCTCGCGCGCAACTCCGCCGCGCCCATGCCGCCCCGGTCTTCGACGATCTCGAGGTCTGGCTGGCCATGCAGCTCACCACGATCTCGGGTAAATCCCCACTCGCGGCCGCCATCCGCTATGCGCTAACTCGCATGGAGCGCCTGCGCCCCTACCTTGATCACGGCATCCTCGAGCTCGACAACAACGCCGCCGAACGCGCAATGCGCGCCATAGCCCTCGGGCGGAAGAACTACCTCTTCTTCGGATCAGAAGCGGGCGGCAAGACAGCTGCCATCGCCTACACGCTGATCGAAACCGCCAAGCTCAACGCAATCGATCCCCACGCCTGGCTCGCCGACACCATCGCCCGCATCCCAGACTACAGGATCACCAAGGTCGACGACCTGCTGCCCTGGCGATGGAACGGGTAGCGGTCAGGCCGGACGGTTACGTCAGA # Right flank : GTTACCCGTGCATTGTCCCTAGGACCACCTCTCAGCAGCCAGATTTGCCGTCCCACGGACGAACGACCGCTGTCGGGAGCGCTGCCCCGCAGCATTGGCGCGGGTCGACTGTCAGCTAAGGTCGGATGCGATGGCGCCCGTTGCTGGGCTCGAGTGGCAGCCCCCTAGTTGACCGATCTACCGACCATCATAGGGTACTTCAGCGAGAGCACGCCGATAACGCAGGCTGTATTCCGTGTGCTCCCAGACCGCATCGGCAATATCTCCTCCCGTGTACTGGGCAGATGGATTTCCCGTAAGCTGACGTCTTTCTTCACGTTCAGCCAGCACCCTGATGACAACTTCTTGGATGTCGTTGTAGGAGAGCCGTTCCTCACCGGCGTGGATATGCTTCGCAAGGTACTCCGCTAGCCGAAATGCGTCGTCAAGGATCGGCCCATGGTCGATGTAACGTGTGCGCCCGGTCAGGATGAACTCGGCATCAACGTCGGTTGTTGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 280720-278861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045073.1 Paracoccus kondratievae strain BJQ0001 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280719 29 100.0 32 ............................. GCGCTCTCGGCTACCTACCCCGAGCCTGACGA 280658 29 100.0 32 ............................. AGTCGCCCTGACCGCATCAACCATATCATTTG 280597 29 100.0 32 ............................. GACTGGATCAACGGGGACCGTGGCCACGATGT 280536 29 100.0 32 ............................. GCAGGGGATGCCGTGCGCCGGGATCAGGTCAT 280475 29 100.0 32 ............................. GTTCGAGGCCAGCGCACGATAAGCCCGCGAAT 280414 29 100.0 32 ............................. CGAGATCGCCCGGATGGCGGCGCTGCTGGTCG 280353 29 100.0 32 ............................. GCGAGGCCGCAGTTGCTGCCGAGGAAAAGCGG 280292 29 100.0 32 ............................. TACGCGGATTTCGGCCATACCGACGACGATCC 280231 29 100.0 32 ............................. CTGACCCGATCCGGTCGTGATCGCCTGATCCG 280170 29 100.0 32 ............................. ATCGCCCGGCTGTGCATCTGCGATCCCTACAA 280109 29 100.0 32 ............................. GCCTGTGACAGGCCCCGACCGTCCGAGCGGCG 280048 29 100.0 32 ............................. GCAGTAAAATCGGGCATTGTTCTCACTCCTGC 279987 29 100.0 32 ............................. GACAGTGAAAAGGCCGCAGCTGGCACGATCAT 279926 29 100.0 32 ............................. CAGATTGTGATGCTGATCCCGGACGGGATTTT 279865 29 100.0 32 ............................. CTATCCAAGTTCCAGGACACGCGAAGAATTCC 279804 29 100.0 32 ............................. GCTGTTGACCTGCGATCCTATCACGCGCTGAT 279743 29 100.0 32 ............................. GCTGTTGACCTGCGATCCTATCACGCGCTGAT 279682 29 100.0 32 ............................. CTTCCCGATGCCGTCAAGGACATCATGGACGT 279621 29 100.0 32 ............................. GACAAGGTTCCGGGATCAACTGCGGTGATGGC 279560 29 100.0 32 ............................. GCAGGGGATGCCGTGCGCCGGGATCAGGTCAT 279499 29 100.0 32 ............................. CCGCTGGTCAAGCCCGATCAGTTTTACAACAC 279438 29 100.0 32 ............................. GCTGTTGACCTGCGATCCTATCACGCGCTGAT 279377 29 100.0 32 ............................. GCTGTTGACCTGCGATCCTATCACGCGCTGAT 279316 29 100.0 32 ............................. CTTCCCGATGCCGTCAAGGACATCATGGACGT 279255 29 100.0 32 ............................. GACAAGGTTCCGGGATCAACTGCGGTGATGGC 279194 29 100.0 32 ............................. GCAGGGGATGCCGTGCGCCGGGATCAGGTCAT 279133 29 100.0 32 ............................. CCGCTGGTCAAGCCCGATCAGTTTTACAACAC 279072 29 100.0 32 ............................. GCCTCGGCGGCGTCCGTGAGGGCATCATGCGC 279011 29 100.0 32 ............................. TTTGAGGCCGCAGTCGTCGCGTTCGATACCGT 278950 29 100.0 32 ............................. AGACCCGGTCGCTGTCGGCGACGGCCTCATCC 278889 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 GGCTCCCCCGCACCTGCGGGGATAGACCC # Left flank : CGGCCAGGATCGCCCTTGACCGGCCCGGCGAGAATATTGAACGCCTCGCCCGGCGCCTGACCGGAGAGACGATCGCCCGGAAGGGCGTGATCCCGGCGATGATCGAGCGGATCAAGGCGCTGATCGAGGGGCGCGATCCCTGATGCCACTGACGATGATCGTGACCCGTGATGTCGAGGCGCGCTATCGCGGGTTTCTCACCTCGGTGATGCTGGAGATTGCGCCAGGCGTCTATGTCGCCCCCGACATGTCGGCCGGCGTGCGCGGACGGGTCTGGTCGGTGATGACCGACTGGTGGACGGCGCTCGGCCGTGGCTCGCTGACCATGGTCTGGCGAGACACCGGCGCGACCGGGAATCTGAGGATCGAGACCTTGGGCGAACCGCCCAAGGAGATCGTCGACGCAGATGGGGTTTTACTCGTCAAGCGTGTGTAACAGTAAAAACACTCGCGCGTATGCTTTTTGACATCGCTGGAAATTCAATATATTGGGCAAGAGA # Right flank : GAATCACGTCGAGACGTTCGGTGTTCGTCAGAGGGTAACCGTCCGGCCTGACCGCCCTGCCGCGTGCTGAGGGTGCGGGATAGTGTCCACCATCGATAGTGGACACTATGGTGATGGCGTGGCGCGTCGGACGAAGCGGCTCTGGACGGATGAGGAGAAGCGGTCGATCTGTTTCCAGACGGCTGCGCCGGGCGTTTCGGTAGCGCAGGTGGCGCGACGCTACGCGGTCAATGCGAACCTGATCTTCAAGTGGTTGCGCGATCCCCGCTTTGCGCCCGACCCGGCGTCGGTTCCGGCCTCGTCGGAGGAGGCGCGCTTTTTGCCGGTAGAGATAGTCGCGGAAGAGCAAGCACCTGCGGCAGCGCCTGTCGCCGAGAACCGCATCGAGATCGAGCTGGCCGGCGGTCACCGGATGCGGATCAGCGGGAGCTATGATCCCGAGGCGCTGGCGCGGCTGATCCGGGGTCTCACGGCGTGATCCCGGTTCCGGCCACTACGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //