Array 1 230031-226208 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040505.1 Schaalia cardiffensis F0333 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 230030 37 100.0 39 ..................................... CCGTCGATGAGACCAACTACGAGGTTGTCGTAAGCCAGA 229954 37 100.0 32 ..................................... TTTCCGTGTCCAACACAATTATGCTCCTTTCA 229885 37 100.0 35 ..................................... AAGTTGTGAGGACGCATTTCCTGCGTTTCCACATT 229813 37 100.0 36 ..................................... TCACACTTTTTGAACCGTGATCCTGCTCCCATATCA 229740 37 100.0 35 ..................................... TCTAAACCCCACTCCATCGAATCGCGCTTCATCGC 229668 37 100.0 36 ..................................... TAGATACCTTACCTTCCAAGATTTCCTTGTACACAG 229595 37 100.0 35 ..................................... GGTCCGGATTTCGCGCTTGGTCATGCGTTCATCTC 229523 37 100.0 35 ..................................... GATCTCCACCACGTTGTCCGCGCTGTGCGCCCAAA 229451 37 100.0 35 ..................................... GTAGACGGGGATATTGGGGGCGCCGGGGACCCACT 229379 37 100.0 37 ..................................... ACGTGCCGGCGCTTCTTTACCCACTACCCTCACCACA 229305 37 100.0 32 ..................................... AAACACCACAGGATCTCCTGATGGTGTTGGAG 229236 37 100.0 36 ..................................... AGACATTGCGTTAACGTATATGACATCCGCTCCGCT 229163 37 100.0 35 ..................................... GCTGGCATCTGTTAGTCCAGGTAGGCATTAGGGAG 229091 37 100.0 38 ..................................... AAGTTTGGTGTTGCGTGCCATCGGAGTGTCCTTTCTGA 229016 37 100.0 38 ..................................... CACCGAGGAGGAAGAGCCATGGGCACCCTCTACTTCAA 228941 37 100.0 35 ..................................... GCAGTCTCTCCAGTGTAAGTTTCCATTTTTCTTCT 228869 37 100.0 36 ..................................... TGTTCATGAGGCGCTCGAGGTAGCGGTTGATCGCTT 228796 37 100.0 35 ..................................... ACCGTCGCCAATGAGAATTGCTTGAGCGAGCTCAT 228724 37 97.3 35 ...........A......................... TTTCAGCGGGCGCGCTCCTCATGGATGCCGTCTTA 228652 37 100.0 31 ..................................... TTACCACGACACGTTTGCTGCCGTCAGCAAA 228584 37 100.0 37 ..................................... CTGTCTGTCTATCTTTGTAAGCACTAGCCTGATTTGC 228510 37 100.0 34 ..................................... CTCCTAGGATTTGGTGGTACTGCTCCTCCGTGAC 228439 37 100.0 37 ..................................... CTCCGATCTTGTGGAGTTTGACATCGATGCCAATGTC 228365 37 97.3 36 ................................G.... TCGCCTTTGCCAAGCGAATCGCCCCCTTTCTCTCTC 228292 37 100.0 42 ..................................... TCGGTGCGATCGTACCGGGCACCAAACTTCCGGTCCCAGCTC 228213 37 100.0 36 ..................................... TTGCCATTAATAAAGGTGAACCTCACCTTCATTTTT 228140 37 100.0 37 ..................................... ACGTCGACGCCGCCCCATACGTAGGGCGTGCCGATCG 228066 37 100.0 34 ..................................... CGTCGATTTCGACATCATCCGTGCGCACGTCGAC 227995 37 100.0 35 ..................................... ACCTCAAGCAGGATGACCCCCTGCGAGGTTGCTTT 227923 37 100.0 36 ..................................... CCTTCCTATGTAAGGGCTACTTTCACTCTGTTGAGC 227850 37 100.0 36 ..................................... TGATCGACCCGAACCCGCGCTTGCTACGAGCCACGA 227777 37 100.0 33 ..................................... TGTGGGAGATCAGTTGTCGCATGTGGGAGATCA 227707 37 100.0 34 ..................................... ACTTGGGGTGATTGGGAGGCGTATCGGGCTTCGT 227636 37 97.3 37 ...G................................. AGACCCCTAGATCATATAGGTAGCTGTTCACGTCGCG 227562 37 100.0 35 ..................................... GTAGGCGCGCTGACCTGGAGACTCAGGTCATACAC 227490 37 100.0 39 ..................................... AGACTCCTTTAGTTTCGGATTTCGACCGATACAACGTCG 227414 37 100.0 35 ..................................... GGCGGCGGAGCGACCCTCACCTACGCGTACCGCAG 227342 37 100.0 33 ..................................... CGAAACCGTAAGCATGGTCGTGAACCGAGAGAG 227272 37 100.0 37 ..................................... CTAAGGTCAGTCTCGTCGAATTTCGTGGTGATTACTC 227198 37 100.0 37 ..................................... TTCTGGCAGTGTTTACACACCACCGAGATTGTATATA 227124 37 97.3 36 ................................T.... CGTTCCCGTATTCGACATCAAGTGCCCAAATCCTAC 227051 37 100.0 38 ..................................... ACTCCACCAGACGAGTTCGTTCGTGTCATCGCGGCTGG 226976 37 100.0 37 ..................................... CACGACCGGAAAACTTAGCTCAACCCTGGGGGCGACC 226902 37 100.0 35 ..................................... GATCGATCCACATGACCGTGATCTTCCTTTCTCTC 226830 37 97.3 38 .................A................... CCGGGATTTCCAGCGGTTTTACAGAGTATTTTTCTGTG 226755 37 100.0 37 ..................................... CCCTCTTTCAAGGGTATGATGACAGGATTCTTTAGGC 226681 37 100.0 37 ..................................... AATTCCGGCCGATTGCCAGAAACTCAGGCTTGGTATC 226607 37 100.0 34 ..................................... ACTTGGGGTGATTGGGAGGCGTATCGGGCTTCGT 226536 37 97.3 36 ...G................................. GTTGGCGAGCATGCTTTCAAGAGTCTCTTTCGTGAG 226463 37 100.0 34 ..................................... CCAGAGGGAAGCGCCCTTCAGAGATGTTGTCATC 226392 37 100.0 37 ..................................... GGGACGCCAGACCTTCCGGCGATTTATTCACGCTGCG 226318 37 100.0 37 ..................................... CGAGAAAGAAATTCGCTCAAAGCTAAAGGGCGACTTT 226244 37 89.2 0 ......C........................C...TA | ========== ====== ====== ====== ===================================== ========================================== ================== 53 37 99.5 36 GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Left flank : CGTCTTGCGCATCCCGAGCGAGGACGGACTGCCATGCACGTTCAAGTGTTTCAACGGAGGATATTTGAAGGAATACAGGGGAGAGCTTGGTTTCCTCTCCCGTTGTGTTCATGGCGCTACGTAGGCGATAGAGGGGTTGTCCGAAGAAGTAGCCGGCTGTTCGAGGGCGCATCGGCGGCGTCGGTGTTCGTCTTGGTGCACTCTCCATGCGCGCTCCCTTCACTGGGTGTTACTGGGTAGTATCGCCATTTGGGCCTGTCTGTGTGTCCGTTTCGCGCTCCTCTTGCGCCAGATTCCCCGGGAGGAGGCCGACTTTTCCGCAAGAACGCGTTGAGATCCGGCGGATGAACGCGTCATGAGTGCTTCGGTGGCGATCACCCTATGACCTGGGTATATGTGCTTTAATGGGGGTGGTGCTGGACGACTCGAGTGGTGCTTTTCGGGTCGGTGGCGATAACCCGCGCATCCTACCTGGTCACAGGCGGTGTTTTCGGGGTGGA # Right flank : GTTCCTGGAGCTGCTGCTCCTGGACGGTGACCTCAGAACAGAAAACGCCAGCACACGATAGAAAATGCAGATAGAAACAGCGGGGAATTAAGGCAATCACCTCGCCTCAATGCCCCACCCTGAACACGATCTACAGTCAAGAGCCCTGTTAAAACACAACAAGAGCCCCTGTCACAACACAAGTGGGGCCCGCGGCTTAAGCCGCGGGCCCCACAACCTTTGTGAGCTGTGAAAAGCTACAGCGTCACTCAGGCCATCTTCGTGCCGACCGAGCCGAGGCGCTGGCAGGCCTCGACAACGCGGGCAGCCATGCCGGCCTCGGCCGACTTGCCCCACGAGCGCGGGTCGTACATCTTCTTGTTGCCGACCTCGCCGTCAATCTTCAGCACACCATCGTAGTTGCGGAACATGTGCTCCACGACAGGACGGGTGAAGGCGTACTGGGTGTCGGTATCGACGTTCATCTTGATGACGCCGTTAGCGACCGCGAGGGCGATCTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 268183-267846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040505.1 Schaalia cardiffensis F0333 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 268182 33 60.6 26 .TTCG.CT..GG..........A..C.CT..G. TCGGCCCCCACTGAAGATCCGCCTCC 268123 33 75.8 26 T..ATGC....G....A..............T. CAACGCCGCGAGGAACCGACGGGTAC A,C [268097,268111] 268062 33 84.8 26 ..AG.GC....G..................... TGGAGCGAGCTCCCCGCCGCCCCCTC A,C [268036,268050] 268001 33 75.8 27 .CCAAA.GC.......................A GCCTCAGGAGAGCTGACAATGGTGGAG C [267975] 267940 33 100.0 29 ................................. TGGAGCGAGCTCGCCACCTCCCCCCTTCC 267878 33 66.7 0 .CCAAA.GC..................CG..CT | ========== ====== ====== ====== ================================= ============================= ================== 6 33 77.3 27 CGGTCCGCTTCATGCAGGCGCGGGGGCGCCCAC # Left flank : GCACTCGATTTGCCTTCCACTCCTTCAAAGTGACAAGGCTTGTCTTCTCAGTGTCCTGAGGTTTCGCTGCCCCGGTCCACAAGGATCGGGGCAGCTGTGTCTTTCCACAAGGCGAGGGCGGGGGCGAAGCGTACGTGAGCGCATCTTCATAGCCTGTCGTGCAAGCGCCGGAAAAGATCGGCGTATTCACACGGAAGGACAGGTCCTATGGCGATGTACACGATCGATTCGGCCCAGGTGAGCGCGAGTGCCGCCAGAGTCGGTCAAAGAAGCGCAGAGATACGTTCCCAGGTCGAAGCCCTGATGGCTGACTTGTTGGCTCTGGAGGGTTCATGGACTGGGGTTGCGCAAGCGGGCTTCCAAGCGTGTATCACGGATTGGAGGGCTACTCAGGCCCAAGTCGAGGCCTCTTTGGATGCGATCGGCCTTCGTATGGGCGAGGCAGCGGCAGTGTATGAGGAAGCCGAGGCCCGCTCCGCTTCGCTCTTCGCCGGGTGATT # Right flank : CGAAAAGGACGACCCCCGCGCAAAGAGGTCTCAACCAGCGCCTCGTGGCCGGTCGAGTAGAGGCTCGGCTCAGTACATTCCACCCATGCCGGCGTCTTCACCACCAGCCGGAGCCGGGGGCTCGGGCTTGTCGGCAACGACAGCTTCGGTGGTGAGGAACATACCAGCGATCGACGCCGCGTTCTGCAGGGCGGAACGGGTGACCTTCACCGGGTCGGAAATGCCTTCCGCCATGAGGTCGCCGTACTCGCCGGTCGCAGCGTTAAGGCCGTAGCCCGCCTCCAGGGAGGAGACGCGGTCGACGACGACGCCGCCTTCGAGGCCCGCGTTCTCAGCGATCTGCTTGAGCGGCGAGGACACGGCGATACGAACGATATTCACGCCCGTCGCCTCGTCGCCGACAAGGCCCTCGAGAGCCGGGAGTGCACGATCGGCGGCCTGGATGAGAGCGACGCCGCCACCGGCGACCAGGCCCTCTTCGGAAGCCGCACGAGCATTGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:3, 3:0, 4:-0.14, 5:-1.5, 6:0.25, 7:-0.17, 8:0.8, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCCGCTTCATGCAGGCGCGGGGGCGCCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1048909-1047497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040505.1 Schaalia cardiffensis F0333 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1048908 37 100.0 38 ..................................... TCGGAGAAGAAATCCACCAGCTCCTCCCTGGAGCTGGC 1048833 37 100.0 35 ..................................... CCTCAGGCGGACAAGTTCCCATGCGATACCCATAC 1048761 37 100.0 35 ..................................... TCAATGTCTCGGATGAGCTGATGCCACCCGCACAC 1048689 37 100.0 33 ..................................... CCGAACCCAGCGTCTCCCCAGCCGCCTCCAAAA 1048619 37 100.0 34 ..................................... GGCACCCGGTCCGGCTTGTGGGAGTCCATGTTTC 1048548 37 100.0 37 ..................................... ACGACATCGGACAGCGTTGCGTCTGTCTTTTTCTCTT 1048474 37 100.0 35 ..................................... ATGCGTAAGGTACTCTACGCGCGCTCAACACTTTT 1048402 37 100.0 37 ..................................... GACCTCGAAGTCTTGCACTCGTTGACATGTGTCGCGA 1048328 37 100.0 36 ..................................... CCTCGGTGAGGAGAACGACCTCACCAAGGATCCCGC 1048255 37 100.0 35 ..................................... TCCCATGCTCCTTCCATCGCAGCCAGCGCTGTTTT 1048183 37 100.0 33 ..................................... GCCTGGCTATTACTAAGAGTGAACTTTACCTTC 1048113 37 94.6 36 ..................TT................. GCACTCCACACTTATCAAGGGTTTTCCTCCACGATT 1048040 37 100.0 38 ..................................... TTACCTCTGGGGTCACTGACCGCCTCCCGTGGGCGTGT 1047965 37 100.0 37 ..................................... CCAAGAAAAAATGTCCACTAGCTAGCAATACTACGCA 1047891 37 100.0 36 ..................................... TTTTCTTAACATGGTACCTTTTTTCTTCATCCTCTT 1047818 37 97.3 36 .................A................... GCTTTCCAGATTCTCTTTTGTGAGTTCCATTTGTTC 1047745 37 97.3 30 .................A................... TTATGCGCACACCCTCAACGCCGTTGGCCG 1047678 37 97.3 37 .................A................... GCGGCGAGAAAAGTGCTGAAGATCAGAGATGATGTTC 1047604 37 97.3 34 ..................T.................. GACTCGCTGATGTGATTCCATTCAGTCATGACGG 1047533 37 94.6 0 ................................TG... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.9 35 GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Left flank : GGCCAGCCGCCGTGAGCGGCGAAGAATTGAATACGGGCTGTGGCGCAGTTTGGTAGCGCACTTGACTGGGGGTCAAGGGGTCGTGGGTTCAAATCCCGCCAGCCCGACGCATGAAAGTCCCAGAACCCTGCTGAGCAGTGTTCCGGGACTTCCTCATTAGTGCGTGTGATCTGTGTTTGGTCTGTGTTGGGGCAAGACGCTCTCAATGGGCCCTCCCTCTATTGGGCCCTGGCTGCGTAGGATCGTCACTCAGAGTCAGCTGTGCGCCCGTTTCCTGTTCCTCGTGTGCCAAGTTTCTCTCGAACAGGCCGACTTTTCCTTAAGAACGCGTTGAGATCCGGCGGACGAACGCGCTGTGAGCGCTTCGGTGGCGATCACCCCATGACCTGGGTATATGTGCTTTAATGGAGGTGGTGCTGGACGATTCGAGTGGTGCTTTTCGGGTCAGTGGCGATAACTCGGATGTTCTGCCTGGTCACAGGCAGTGTTTTCGGGGTGGA # Right flank : GTGTCGACGATGAGGGAGACGCAGGACACGACACGACCTTGGATCAGAAAGCGCCACGCCCCACGCCTCGGGGACATTCACCCCATTCTCGCAGCGCCCCACACTCAGAGGGCAGAAGAAGCCCTTTGCCGTTCAAAATCCAGAAGGAAGCGTTTCGCTTCGACTCCGCCTCGGTAGCCGCCGAACGTCCCGTCACTTCGGGTGATGCGATGACACGCCTGAATAAACGGCAAAGGATTCGCCGCACATGCGTTTGCGGCAGCGCGATGAGCCTTCGGATGCCCGGTTGCGGCAGCCAATTGCGAATAGCTCATTGTCTCCCCGAAAGGAATCGTGGAAAGAATCGCCTGAACCTCGGCGAAAAAGCCGCTTGACAAACACCGGTCAAGAGGCAGGTCAAAACTTTGACGCTCACCCGCGAAATACTCAGTCAACTGGCGCTTCGCCAAGTCAAGTAGGGCAGTGGCGTCCTCGTGAATCTCCTCGTCAAGCACCTGGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1286094-1286242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040505.1 Schaalia cardiffensis F0333 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1286094 26 100.0 35 .......................... TGCAAAGCGGTTTCGAGGATCTCAGGCGGCTCAGC 1286155 26 100.0 36 .......................... GAATCCCCACCTCATCGCCCACTCCGATCTCGCCCT 1286217 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 3 26 100.0 36 CTGTCCCACGCGCCAGCAGAGCACCC # Left flank : GCTGATACCGATCACCGAATAGCCGATGCCTTTGAGCGAGTTCAAGGAGTCGCGAAAGTCGCAGGCTTCCTTTGTGCATCCCGGCGTCGAGGCCTTCGGATAGAAGTAGACGATGACGCCTTTTTCGGACTCCTTGAGGAGTTCCGCCAGGTGAATGGTGCCGTGAGTGGATTCGGCCGTAAAATCGGGGGCGATCTGCCCCACTTCGAGCTTGCTCATGACCTCGAGTCTACGGAGTATGACGCGCACTCACACGCCGAGCATTTCGCAGGCCGACGGTAGGGGTGAGAAGACAGCAGCGGTGAGAAGTTGGCTAGGGTGAGAAGCGGCCCAACGCTCGACAAGCAGGGAGCAGCGGGCAGCGCAGGGTACCGGGAGCACGCACGGGGGCTCTCGCGTGTTCTTCCACGAGGATCACTTCTTCCAAGGCGTGCGGGGCGCATGGGCGGCTTCTCTCGACGCAGGCGCGGGAAATGAATGCGAGGCTCGCGCTTCACCTT # Right flank : CCAGGGAGTCAGCCTCACGCGAGCTGGATCTTGTGCGCTCTCCACGACGCATGCAATGCTGCTTGGGACCCCAACAGTCGTAAAGGAGAACGTCACCTCATGGAGTCCATTACCTCTGTGTTCGATTGGTTCCTTGCGCCGGAAAATCGCCTCATCATGTGGATCGCTCTCGGCTTCCTCGGCATCATTGTGTTGTTCCTTGTGCTCAAGTTTTTCGCCAGGTTCTCGAAACTGGCCTACAACAAGGATTTCCCCGTCGATACCCGCGAAGCGAACCTGCTCGCACTCGGCTTCCAGCAGATCACGAACGCTCAGAACTACTGGAATGACCCGACTGCAAGTTTGTCGAGCACGAGCTCGCTTCACAAGCTGCGCGACATGTGGGGATTGAACAGCAGCAATGACGTCTACGAGAATGTCGAGCGCTTGTTCATGCAGCGCCGTCGACGCGAACTGTGGCAGCAGCTACTCACCCTGCGCGCACAAGCAGCCCAGGCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCCCACGCGCCAGCAGAGCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 5 1891033-1887098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040505.1 Schaalia cardiffensis F0333 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1891032 29 100.0 32 ............................. GCTTCACTTGCCCGTTTAGGGCGGTCATGCTG 1890971 29 96.6 32 ............................T CGCCGGTACCGCAGGGCCGGGGCCGTCATCAT 1890910 29 96.6 32 ............................C TACGGAATCCGGCAGGGGAGAGCCCAACTCAC 1890849 29 100.0 32 ............................. TCTCGCATCGAGACCTTGCCGGTCGTCCGCTG 1890788 29 96.6 32 ............................C CGCGTCGTGCGCAACCGCGCCCTTGGCAAGCG 1890727 29 100.0 32 ............................. ACCTCGTCCCAGATGTTCCAGCGCATCACAGT 1890666 29 100.0 32 ............................. GGTGGCGTGCAGCCGCTTTCGTTGTACGCGTG 1890605 29 96.6 32 ............................T GTTATCCGCGACGACATCGGCATATGTATCGA 1890544 29 96.6 32 ............................C ACATGGAACGGCACCTGGACTCACGTCCTGCG 1890483 29 96.6 32 ............................C GCCGCAGATGCGGCGCCCAGCAACCACTCTCT 1890422 29 100.0 32 ............................. GGTGGCGTGCAGCCGCTTTCGTTGTACGCGTG 1890361 29 96.6 32 ............................C CGGATTTACTGCAACATCCTGGCCCTTCGGGA 1890300 29 100.0 32 ............................. AAGAAGACGGAGGAGAAGCCCGCCCCGGCTCC 1890239 29 96.6 32 ............................C GTCGCAGGCCACAGGCTGTGCGACTCCCAACC 1890178 29 100.0 32 ............................. CCGTCAATGAGGACGGCGGGCGAAACGCCTAG 1890117 29 100.0 32 ............................. CAAGGAAAGACGCCCGAGCAGACGCGATCCAG 1890056 29 100.0 32 ............................. ATCGGGTTGGCGGCGAGGACGGCGGACAGGGC 1889995 29 100.0 32 ............................. GCTCGCTTGGCTTTGCGCGTGTCTGCTGTGAC 1889934 29 96.6 32 ............................C ATCTGGTACCCCATCACCGGCGTCGCCGTCGT 1889873 29 100.0 32 ............................. CGCGAGCGTGGCGGCGGCCTGGGCTTCTTGAT 1889812 29 96.6 32 ............................C TGGCTCACCCCCCAGGTCAGACGCTGGGCTTA 1889751 29 96.6 32 ............................A CGCTCGCGAGAATCGCTGGCCTCAAGAAGGCA 1889690 29 100.0 32 ............................. AGAGCATCGCCGACCGCGTAGTTGTCGGGGTT 1889629 29 96.6 32 ............................C TCCTCAGCGAGGCATACACTGAGCGCCGCGTC 1889568 29 93.1 32 ....................A.......T TGCTTCGTGTTCGCGACGACGGAGACCTTGAC 1889507 29 96.6 32 ............................T GCGATGGGTGATAGAGGCGACGAGCTGGGTTA 1889446 29 96.6 32 ............................C TCGACCCGAAGAACCCCGGCGCGTTCCGTTAC 1889385 29 96.6 32 ............................C AGGCAGACGAGCGTCATATTGCGCCGTTGCAG 1889324 29 100.0 32 ............................. TCGGATCGGAGCAGGAGCGGATTGCAACGCAG 1889263 29 100.0 32 ............................. TGGAGGACGCGCGATGAGTGTAATCGATGTTG 1889202 29 96.6 32 ............................C TCCGCAGTTTCTCGAGTCGTCCAAAGTCTGGG 1889141 29 100.0 32 ............................. GTCACGCAGGCTGAGCTGGCGGCCATGCGAAA 1889080 29 96.6 32 ............................C AGCGAGTTTGCGGGCCTCGTCGATGACGGCGC 1889019 29 96.6 32 ............................C GCCTGTTTCGTGACATCCGTGAGGAAACCGCC 1888958 29 96.6 32 ............................T GCGATCGGCGCCGACAAGATCACCGGCGCACT 1888897 29 96.6 32 ............................C CCCGTAGGAAATTGTCTGACGGCGCAATAGTC 1888836 29 96.6 32 ............................T CATGCGCCGCCTCATGTGCGTTTGGGTACGGG 1888775 29 100.0 32 ............................. GTTGGCCTCAAAGTCATTCTTGACAACATCAC 1888714 29 93.1 32 ..........................T.C GTAAGCGTAGTCGCTTCGTGAACTCGGTGACA 1888653 29 96.6 32 ............................C GCCTGTTTCGTGACATCCGTGAGGAAACCGCC 1888592 29 100.0 32 ............................. ATCCGATCCAATTCCCCTCGAAGACCGCGTCG 1888531 29 100.0 32 ............................. AACGACTATGCCGAAGCGGATTCAGCGACGCA 1888470 29 96.6 32 ............................T CCGAGCCGATGCGCTTCGGGAAAACTGAGATC 1888409 29 100.0 32 ............................. TTTTTGCAGGAGCGGTCCAAGCGATCCAAGAA 1888348 29 100.0 32 ............................. GAGCGTGGGACAAGAGTTTCTGGCGTGAAACG 1888287 29 96.6 32 ............................C CGGTCTCGGTCGAACCGGGCGCCGGTAGGGGC 1888226 29 96.6 33 ............................T CCTCCTCAGCGCCTGCGGCCACGAATCCTGAGG 1888164 29 100.0 32 ............................. ACACGGAAATACTTCGCCGCGTAATCAATGGC 1888103 29 96.6 32 ............................T GGCAGATCCTCAAAAACAAAGGCATGGAGGCG 1888042 29 100.0 32 ............................. GTCATTTCGGACTGGCGTTTCTCCGTGTGGAC 1887981 29 100.0 32 ............................. GCCATGATGACGCCGACGGCTGTGGCGATCGC 1887920 29 96.6 32 ............................A GCTGAGGCACAGATCGTTCAGGCGATCATGAA 1887859 29 93.1 32 .....T......................C ACAGGGGGCAGCACGCTCCACCTCGTGCGGGT 1887798 29 100.0 32 ............................. ATTTCGGTGACGATCTCACCGCAAGCGGAGAT 1887737 29 100.0 32 ............................. GCCCCTCACAGCCCCTCACCCCTCCCCTGCTC 1887676 29 100.0 32 ............................. AGTTGGCAAAGTGGGGTTGAATTATGGTGGCA 1887615 29 96.6 32 ............................A GTGGGACATGAGAATGCCTAAACCTTGACACT 1887554 29 100.0 32 ............................. TCTGCGGATCTGCTCTGCAACGCCAATGGGGT 1887493 29 96.6 32 ............................C ACCCGATGCGCGCGCGATCCCCGATACATGGA 1887432 29 96.6 32 ............................C CGGACGAACACGAGGACGGTGGCGAGCATGCC 1887371 29 100.0 32 ............................. ATGCCTTGGATGACGGTGAAGATGCTTTGGAT 1887310 29 93.1 32 .......T....................C GCATACAGGGCTCGGCGCGCATCCTGATAGCC 1887249 29 100.0 32 ............................. CGTTGTGTGGAGGTTCGGCATAGCGCTGGGTG 1887188 29 93.1 32 .........................AT.. GCCTGCTGGGTGTCCGGGATGTTCAGGAACAG 1887127 29 79.3 0 .....TT.....C...TA.......C... | T [1887101] ========== ====== ====== ====== ============================= ================================= ================== 65 29 97.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : TCGCTGACCTGAGACTCTGGGACGACCAAGGCAGTCCTGTGCTTGCGGGCGTCTCATACGAGGAGCACTGACAGTCAATGGTTGTCGTGGTGCTTTCGGTTGTTCCTGATTCACTGCGCGGGCACGTGACTCGGTGGTTGCTTGAAATATCTCCTGGAGTCTTCGTCGGGAACCTGAACGCACGCGTGCGGGAACGTTTGTGGACAGTGATCCAGGAGAACATTGGCAGTGGACGGGCGATTATGGTCTTTCATGCGTCGAATGAGCAGAGACTGTCGTTTCTGACCTTGGGTGATCCATGGGTGCCGACCGATTTTGAGGGCCTCACCCTCATGGTTCGTCCGGGTGGATATGACGATGAGAACGCGCCGGAACAGCGGTCAGATCGGGGTGAGGGACACCGTCGTCCCGGTATGAGCAATTTCGAGAAACGACGACGGGCGCGGCGAGGTTTCCCAAGAACGGATCGACAAACGCTCTAAAATCGCAGATCATTAAGT # Right flank : TCTGCATTGCGCCCTTGGTAGCGAAGGCCTTGGCGATCTGAGGGACCGGCTCGCCATTCGGGAAAACCTGTACAAGCCCTTCGCTCCGCCTTTTGAGATAAGCCTTGGGCACGAGCAAAATCGTCACAACTGCGCAAAGCGCGACCAGATCATGTGTCACCAGGACCTGCACCAGACCCCATTGTTAACATCTGTATCACAGCTAACAACGCCGCAGCCTCTCACGGGCAGGTTTTGCAAAATCCCAACTTCTTCGGAACGTGATGAAATAGGGGGGTGTCATCTGGGTTGAGGGCTTTCATGTCATCGTTGTGGGCGAGGTTGAAAGGCACTTATGGGGTTGATCTGATCCCTGAGCAGCCGCCCGTGCAAGAGAATCGCAGAACCGAGGCGCGGACCCGTCCTTTCGCCGCCCCTCGGACGGGAGGCCGTAGCGCGACGAGCGGGAGTGAGCAGCATTCGTCTGTTTCTTCCGCTGATTCGCGAGTGCGTGAATATGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //