Array 1 34186-34477 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF924017.1 Clostridioides difficile T19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 34186 29 100.0 37 ............................. GAAATAGCGAGAATTATTGTGTCTATAGGAGCGGTAG 34252 29 100.0 36 ............................. AATTTAAAAAAGTGTATTTATAATATTTTTAAACAA 34317 29 100.0 36 ............................. TTTATTTTACTTGTAATTCCTCCAAGTATACCACTT 34382 29 96.6 38 ...............A............. CAGATGAACGTAATAAGTTCGCTGAAATGGAAGCTAAA 34449 29 86.2 0 .....................C.AA...T | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 96.6 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTTGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATAATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTACGATTTTTTATATACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTAATATATCAAAAACATTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGAACTGGAAATGCTTAATTTATTTTGGG # Right flank : TTGAATAAACGCACAAAACATCTACTTAAACATATAGGTGTTTTTAGTGTAAATATTTTTAAATAATTGGATAAATTTCCTAAATCAATAGACTAAATTATTAATTTTAGATAGAATTATATTTGAATAAATAATTTAATAGGGGAGATTATATTATGAAATTAACAAAAAAAGTATTAGTTTTGAGCATAATAGCATGTTTTTCTGTAATGATGTTTATGACGGGATGTACTAGTTCACCAGAACCTAAAATGGAGGAAGCTGGTCAAGAAATACCAAAAGAAGAGGAAGAGATACCAGAAGAAAGCATAGATAAAGATAAATTAAATCCAGAAGAATTTTTGGGTTGTCAAATTAAAGAGTTTAAAGATGGTTGGCATGCATTAGGGCAGATAGAAAAAAATGTAAATGATGGAAAAATGACTAATGATAATTTAAAAACAGTGGCTGACTTATATGAAAAGCAGTTTAGCACTTTGAATGAAGAAATTGAAAAGTAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 22303-22462 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF924093.1 Clostridioides difficile T19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 22303 29 100.0 37 ............................. TTTAATATTAGATATGATTAAGTGTCGAACTGGAAAG 22369 29 100.0 36 ............................. GTCAAGCCGAAGTCGTCTGAAAGCTTGTCTAAACTG 22434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 37 ATTTATAACTAACTTAGTGTAATTTAAAC # Left flank : TGCAAATCCATCACTTAGGTTAACTTTGCCTTGTCTTATTGATTTTACTTCTGTTCCTTTTAATTCAATTCCACATTCATAAGTTTCTTCTATAAAATATTCATGTCTTGCTCTTTTGTTTGTTGCTAATATTTTTTTACCAGCCATATAAATCTCACCTTCTTTGCTAGAAATTTCTTCCATAAATGTTAGAAATTTACTAAATATTTAATGTTGCCAAATTATTTGACTAACTTGTATGATAACATATTTAGGTATTTTAGTCAATATTTGACTGATATATTAAGTTAGTTAGGCTATATATAATTAAGTAATATAAATGTATGAAAATAGCTAAAAAACTACTTCGAATATACTTAATACTAAACTAACTCTAACCAGTAATACTAATTTATAAATTTCAAAACAAAAATATTACATATTATAANNNNNNNNNNTATAACTAACTTAGTGTAATTTAAACAATTGAATAAAGAGCTATACAATCTAGGTTTTAAAAT # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATAACTAACTTAGTGTAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 8651-8804 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF924092.1 Clostridioides difficile T19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 8651 23 100.0 42 ....................... AGATGCTATCATTGAATACATGAATAAATATGAAGAATTTAT 8716 23 100.0 43 ....................... TTGGATTAGGTGGTTCTGGTTTTATCTCAATATCTGGATTTAT 8782 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 100.0 43 AACTAACTTAGTGTAATTTAAAC # Left flank : AACTTGATTTTTTATTACGATTTGTATTTCTTTTTCATCATCACAAGCTGCTATTGTAATGATGACCTCTCCTAGTATTGTATTTTTATTTAGATTATTCACTTTAGGTTAACACTTTTTAAATGTATTTATCAATAATATTTAAATTAAAAATGTATAAAAATACCTATATCCAATTGGATATAGGTATTCGTGGATTTCAATGGTGGATACGAGGGGAGTCTATAAGTGGTTATTTGATTGTTTTGTTGGTTTTTGTAAGTGTAGGTATATAGCTATTTGGTCATGATGTTGAAGCAATTTTTTTGGTTATTTTTTATTGTTTATTTTTGTAATTGGGGTATTATTGGGGTATAATTTTCTACTTTCCAAAATTATTGATACTTCAATAATATAAATCAAATTCTTAGTTAAGTTTTTTAATGAATAGGTAAATATTATTTGTACTCATAACAATATAGTTTACACATAATTTTATATATACTTTCTGGTATATCTGC # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTAACTTAGTGTAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //