Array 1 108422-110232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNC010000033.1 Actinoplanes sp. TBRC 11911 33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 108422 37 100.0 38 ..................................... CGGAGCGCTTGTGTGCGGCCCAGTAGGCGCGCATGAGG 108497 37 100.0 34 ..................................... GACTGGTGGGGCTACTGACGGTGGCACGGGCAGA 108568 37 100.0 37 ..................................... TTAAGCTCAGCCTCGACATGGATTTTGAGGCGGAAAC 108642 37 100.0 36 ..................................... GCTGGTCCGGAACGCCTGGCGCTCCATGAGCAGCCG 108715 37 100.0 37 ..................................... TCCACCAACCGCTTCGCCACCGCCAAGCTCTACGGGT 108789 37 100.0 37 ..................................... AGCTAGGACCCCATCCCGGTCCTCAGAGGACCAGAGA 108863 37 97.3 38 ..................T.................. GAGATCGAGAAGAGCCCTCAGGAAACCCTGCGCCTGGC 108938 37 100.0 36 ..................................... GCGGGCTGCGCGGTCATCAGCGCCATCTGCAACGGG 109011 37 100.0 37 ..................................... ATCCACGCGGGGGTGCCCTGCGCGCGGAGACCGCCGT 109085 37 100.0 40 ..................................... GTCCTGCCGTTCAACCGCGACTTCGGGCACCTCGTCGGCG 109162 37 100.0 36 ..................................... GACCTGGATCCCGACGTCGTTACCGTGCGAGCGGGC 109235 37 100.0 36 ..................................... GGGTCGTTCGCGCTGCCGCTGCTGGCCCAGTTGCAG 109308 37 100.0 34 ..................................... GGGTCCCGGCTTGCGGATCTGGCCACCCGCATGA 109379 37 100.0 41 ..................................... AACAAGAACATCCAGCCGCTGCGGCAGATCGACACGGGCGG 109457 37 100.0 36 ..................................... CTCGGGCAGTCATACACGGTCCCCAATGCGTCCGTT 109530 37 100.0 39 ..................................... AAGCGCGGCCCGCCGGCACCGTCCCGCGGGAGTGCACCG 109606 37 94.6 36 ............................T....G... CTGCACCTCGTCGCTGAACATCACGTAAGGCAGGCC C [109620] 109680 37 97.3 34 .............A....................... GTTGACGGCCATCGATCACTCCTTGATCTCGTAG 109751 37 100.0 38 ..................................... GTTGTCGTCGGCGACCCCATCCTGGGGCGCGTCGGCAT 109826 37 100.0 35 ..................................... GTTGCCGGCACTGCGCATGATGTCCGCCAGGTCTC 109898 37 100.0 39 ..................................... GCGTAGACCTTGACGGACTGGCTACCGGAGCCGCCGATC 109974 37 100.0 37 ..................................... CTCGTGCACGACCTGGCGCACAAGTCCGACGCCAGCG 110048 37 100.0 37 ..................................... GCGAACCCGCGCACGTGCGGGGTCTTCCCGGCGACGA 110122 37 100.0 37 ..................................... TGGCGGTTGTCGTCCCACCACTGGCGGAGGTGGGCGA 110196 37 97.3 0 .............C....................... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 99.5 37 CCAGCGCCGACGGTCCGCCGTCGGCGAGGATCTCAAC # Left flank : CCGCTGATACAGGCCCGGCTACTCGCCCGCCACCTACGCGGCGACGCTACGACCTACACCCCCTGGAACCCCGCCTAATGGAATACCTGCTCACCTACGACGTCGACACCACCACCCCAGCCGGACAACGTCGGCTCCGACGCGTCGCGAAAATCTGCGAAGGCTACGGCATCCGAGTACAGAAATCCGTCTTCGAAGTAACCTGCACCGCAGCCCAACTACCCACACTGAAACAAAAGCTCATCGACGCCATCGACCACACCGTCGACGACATCCGCCTGTACCGACTTACCCAGGGCACCCTGCAAACCGTCGAACGGCTCGGACAAGCCAAACTTGCCCCCCACCACGGCGACCACATTCTTTGATGATCAAGGAACCCCAAGCACGACCCGGAATCGCGGGAGGTTCCTGCCCCACAATGGATGCAAAACGGTCATCAAATCTCCATGGCGGCGCACAGAAACCCCACCATGGCACGATGTTGCTGCTCGCGAAGC # Right flank : CCAGGTCGACCATGGCATTGAGCTGCTCGAAGGAGTCGACCTCGGTCTTGTTGACTGAACTACTTGATGTTCCGGCGCTGCTCAGGGTGCGGGGAGGGATCTTGTTGACTACGGTCGCTGCCCGTGATCGAACATGGAGATCCCTGCCGGGATCTGGGGTCTTTGGTGGTGCCGCGGGTGGGGTCTCTGGCGGCGACCGGTGATCTGTGGGAGCCGTATCGGCTGTTGGATTCCTCGGGCCAGCCGGTGGCGGCCGTCGCGGCGTACTTCGGCGAGTTGCAGGCTGCCGGGCGATCGACGGCGACACAGCGCTCGTATGGGATGGCGTTGCTGCGCTGGTTCCGGTTCCTGTGGGCGGTGGAGAGCGCGTGGCGGGAAGCGACCCGGGTCGAGGCGCGGGACTTCTGCCGCTGGATCCAGATCGGACCGAAGCCGACCCGACCGCACTGGCGGGCCCCGGACCAGCCGCCGGCGGTGAAGCCCAAGCGGGTGAACGCGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCCGACGGTCCGCCGTCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 23467-23133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNC010000005.1 Actinoplanes sp. TBRC 11911 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23466 29 96.6 32 ............................C TGCTCGCCGCAGAAGTCGAACGTGTCCGGCTC 23405 29 100.0 32 ............................. TCGGAGTCGTCGGATTTCAGGTAGGCGACCAG 23344 29 93.1 32 T..............A............. GGCCCGGCGCCGGGGTTGTGCGCCCGGTGCCC 23283 29 100.0 32 ............................. CACGAGCGAGTGTGCCTGGGCGAAGTGAGCGA 23222 29 100.0 32 ............................. AACAGGTCCTCGAGGACCTGGGCGATCGCGAC 23161 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GCCCTCGTCAGGTAGGGGTTCGAAGGGTTTACGATTCGGGCATAGCGGCAGTTTCCGATCCGGCAGTTGATACCGTCGGAGCGTGCTGACAAGGGCTGTTCGACCGGAGGTGGAGGCCGAGATGGCACGGGCTTCATGCATCGTCACTCCTCTGAGGAAGGACGGTTCGGCCTCCTCAGTCTCAGGTCGCGACTAAGAAAACCCAAGGCCTCGGTCGCCGAGAGTCACATAGGGAGCGATCGCTGGCCTGCCCATCACTTGGGTCCGCGCGCCGGTGCTGCACTGCAGTCTTGCCAGCGCCCGTAACTAATTGCGAATGACGGAGATGGCTGGACCTAATAGGGCGCTCATGGCGTATTAACCCTGCGAGCGAGAGCTTACGTTCGCGGAGCATCCATCGTCAGGAACTGATTGATTTGGACGGTGTAACCTGACTAACCAGGCCAACGCGAGTGAACAAAAACTAGGCTGTTGATCTTCGAACCCGCAGGTCAATAAGC # Right flank : GACGGCCGGGACGCAACCTCGGTGGCGAATGCGCTGCTCCCCGCGTACGCGGATCGGCTCGTCGGCACCGACTTCGACGGGCGCTTCGACTACGGCTCGTTCATCGCGATGGGCATCCCCGCGGCGGGCATCTTCACCGGTGCCGAGGCATCGAGACCCCAGCAGAAGTCCAGTGCCCACTTCACCACCGGAGGCCACGGCCAGCTCGGTCATTGTTGCTGCGGATCGGCGGGTGGGCGTACGGGGAAATTATTTGTTGTCGAGGATCGCGATGGTGGAGACGTGTGAGTGGACGCGCTCGTCGGTCGGGTCCTCGTCCGGGGTGCGGTGGACGGCCAAGTGCCGGTACAGGGTGTCGCGCTTGGCCGGGATCCGGTCGGCGTCGCGGATCATCGAGATCAGTTCCTGCAGGTTGGAGCGGTGCCGGGCACCGGCCGAGGAGATCACGTTCTCCTCCAGCATGATCGAGCCGAGGTCGTCCACGCCGAGGTTCAGCGCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26613-28222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNC010000005.1 Actinoplanes sp. TBRC 11911 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 26613 29 100.0 32 ............................. GGGTCCTCTCGTCGCCGGGCCCGTTCGACGAG 26674 29 96.6 32 ............................G CATCGCTGTTTCTCGAACTGTCGGAGCGGATC 26735 29 96.6 32 ............................G CACCACGCGACCGGGGAGGTCTACCGGTCGTC 26796 29 96.6 32 ............................G GTGCCCTGGCGTCGCGTGCCCAGCCCGACCGG 26857 29 96.6 32 ............................A AGGTTGGGCCGGTGTGGCTGATACCGATCGGT 26918 29 100.0 32 ............................. GCGGGCCAGTAGCGCTCTAGACGCTCGGCGCG 26979 29 100.0 32 ............................. GCGAAGACCTAGTCAACCCGGAGGAGGAGGTG 27040 29 96.6 33 ............................T CAGCACCTGCTACTGCACCGGACGCCCCGGCTG 27102 28 93.1 32 .....................-......T AGACCAGCGGGCCACCCGTGGTGACTGCCGCT 27162 29 96.6 32 ...........A................. GCGACCATGCCGTCGAAGGGGTGGGCGTGAAG 27223 29 93.1 33 .....................A......A TCTGTGCGTCGTCCTTTTGGAGCGTGAGAGGCA 27285 29 96.6 32 ............................A CCGCCACCAGATGATGCCGTCATATGACTTAA 27346 29 96.6 32 ............................A TGCAGGTCATGTGCCAGGCGGTCCACGACTCT 27407 29 96.6 32 ............................T CGGACCCTTCGATCTTGCACTCCCACGTGAAT 27468 27 93.1 32 ............--............... CAGTTCCAGCAGCAGGTACGCCGCGAGGTCAC 27527 29 96.6 32 ............................G GACTGGAATTCAACCATCTACCTTACCTCTTC 27588 29 100.0 32 ............................. GGAGGCTCGCCCGTGTCCGGCGATCTACTCGG 27649 29 96.6 32 ............................T TACTCGGCGCTGCTGGCGCCGCCGGTGACGGC 27710 29 100.0 32 ............................. GGCGGTAGCGGGCGCGGGCCGTGCGCATGGAG 27771 29 96.6 32 .......T..................... GCGTCGGGGACGTGTCCATGGTGCTCAAGCAC 27832 29 93.1 32 ........................A...G TGGTCACGCTGGGGCCGCAACATGCGTGAGTC 27893 29 96.6 34 ............................A GCGGATCGCCGGAGAGCAGCTCGACCCGTGTGGA 27956 29 96.6 32 ............................G TAGTTACCCGCGCCAACGACGAGGGTAGCGTT 28017 28 96.6 32 .....................-....... CGGCGGTCTGGGATCCGAGGCGTTCCACGGCC 28077 29 100.0 30 ............................. TTCGCGGACCGCGCGGATCGCATCGCGAGT 28136 29 96.6 31 ............................G CAGGTCACGGCGCTTACCACCTAGTCAAGGA 28196 27 89.7 0 ........--..................G | ========== ====== ====== ====== ============================= ================================== ================== 27 29 96.6 32 CTGCTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GACGATCCCACCCTGGCCGACGAAATCAAAGATCGCCTCGACCAGGAAGCTGACGTCTACATCAGCGCGGCGAGCGTCTGGGAGGTCGCCGTCAAACAGGCTCTCGGCAAGCTCGACCCGCCCGATCTCCCGGAACAAATACGAGACAGCGGCTTCCGCCTTCTAAACATCACCGCCGAGCACGGGATAGCAGCAGGGCGATTGCCAATGCACCACCGCGATCCCTTCGACCGCATGCTGATCGCCCAAGCACGCCTTGAAGGCCTGACGCTGGTAACCCGCGACGCCCACATCCCGAAATACGACATCGACGTACTGACGGCTTGACGGCACCGCGTCGGCACGGCCGCGCGTTTCCACGAGCGCCGGCTTCTTCCACGGGTATCCGATGCCAACACCGAGAGCAGTTTCCAACGGCTTTCAGACACGTCGACTACATAGGCGAAATTCGAGTGAACGAAATCGAGGTTGTTGATCTTCATACCGCCAGGTCAACAAGC # Right flank : GCGCCAGGCCGCCCTGTCGGCCGATCGAAATGACTCGCTAGTGGACCGTCGGCGCGGGTGCCACGCAGATGCCAAACCACCTCGGGATCGACGACGATGTCGGCGTCCGTAACTCGCGTGACACTGTCCAGGAAATCGCCCACCTGCCCTACCCGATTCTTGAGCAGGTAGCCGAGCCCGCACAGGCACGGCGACGGCCATGCGAGATCAACATGTAATAAATGGCGTTCATAGTGTGCGGACGATCCATCGATCACCGTGAGGTTCCATTGTTACTCTCGCGCCTCCGCGCACTGGGGCTGGTTGCGCTCGCCGCAGCAGCGTCCTTCATATCAGTCCCGACCACCACCCCGGCCGCTGCCAGCCCGGCCACCACCGTGGCCGCAGCCACTCCCCCATCACCCGGCGACCCCGGGGCCTCGGTCACCCTGATCACCGGGGACAAGGTGACCACCACCGCCGACGGGGGCGTCCAGGTCCGTGATTCTCAGGGCGGGCTC # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 33947-34892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNC010000005.1 Actinoplanes sp. TBRC 11911 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 33947 28 100.0 33 ............................ ACACCAGGCCGACCGCTCGCTCACCGACGGCGA 34008 28 100.0 33 ............................ TCCGTACGCCCTGCCCGCGGCAGCCGCCATCGA 34069 28 100.0 33 ............................ CTGGCGGGCGATGAACGCCGGGGCGGCGGTTCT 34130 28 100.0 33 ............................ GCCTGAGGCGCTGCCCTTGCACCGCGCGGAGAT 34191 28 100.0 33 ............................ GTGCAGGCCCTGCCGGTGGCGCTCCCACACGCG G [34213] 34253 28 100.0 34 ............................ GTGACTACCCTGCCCCGCCCATCCCTCGGCAGTC 34315 28 100.0 33 ............................ GGCGATCGTCGGCAACGACGGCGAAACCGTCGG 34376 28 100.0 33 ............................ CGCCCCGACCGGCTCGCCCGCGGCGCGAACCTT 34437 28 96.4 33 .............G.............. CATCACACGACCTATCCGACGGGAGTGCTCTCG 34498 28 100.0 33 ............................ GCGGGTCGGCCTGAACAAGGCCGAGACCGACAA 34559 28 100.0 34 ............................ CTGGGTCATCGCGCTGGCCGCGGTCTCGGCCGCC 34621 28 96.4 33 ...................A........ CAGAATCGAGCATCCACGCGCTTTTTCTCGAAC 34682 28 100.0 33 ............................ CTCGGTAGCCAAGGCGCTCACCGATTTGTATGT 34743 28 96.4 33 ...........................G TGGTTCAAGACCAGCCCGTACGCCGACCGGGGG 34804 28 96.4 33 ............G............... CAGCCACGGACCGGTCAGCACGTTGGCGATGAC A [34823] 34866 27 89.3 0 .............G...-...C...... | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GACAGGGCGGCCGGCACCGTCCCCTTCTGATATGTCGGCTGCGGGCACACCTGGCTGATGCCACCGCCTCCGCCCCAGTTGAAGGCGCCCGGCGGCGCGGTCTCGTAGCCGTTGTGGCCGGCGTTCATTCGCGCGATGTTGTCGCCCCAATTTACCGAGTTCAAGGATAGCCTTCGCGACGCCGCAGTAACAGGCGAAGCCCTCGACCGGAAATTAGATCAACGACAGGCTACGCTGGGGTCGCTGGCCACCACTTAGGAGTGTGAGAATGCCGAGAGTGGTGCTAGATCTCGATCTCTCCACAAAGCAAGGGCGTGGGGCGGACGATTCCAAGCGATGGCAACCCGCCGCGCGGGCGGGTCGGTCCGGCCCCGCCGAGCGCCACGTGCTGCAAGGCCGCCACGCGTCGTCGGTCCGGCCGGCTGGAAAGCAACCATGCGCTGCCAGTCCGAGTGAACAAGAACCAGGATGTTGATCTTCAACCCCGCAGGTCAACAAGC # Right flank : CGAGTGTCGTCACCTCGCGCTGGGCCGGAAGGCCCTGCTCCGCTAATTCCCCGTACGCCCACTGCCGATCCGCAGCACGAATGGCCGAACTGGTCGTGGGCTTCCGGTGGTGAAGCGGGTACTGGGACATCCCGCTTCAGGACCGGAGGCGTACGTGGGCCGGGGTTGTCAGGGGATGGTTGTGGTGTTGAAGGTGAATCGGGCCACCGAGTCGGCGTTGACGTCCACGCGGTCGCGTTGATGTGCAGCGGATGTCGTGGGCGACGCCTGCGATGCCGCCGAACAAGGCCTGTTCGGATGGGGTCTTGATGTCTTCGGCGCCCGGCGAAGACGCCGCCGGCGGGGGTGCCGACCGTGACGAAGCCGTTGTCGTTGATGCCGAGGCCAGCCGTCATGCCCCAGGCCCGGGTCCGGCCCGGCAACCGACGCTTTCTGGACACTTCCGTTCGGCGTGTTGCCCATACACGCTGGCGGCGGACGAAGACTCTCCAATGTGACCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 199371-199223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNC010000006.1 Actinoplanes sp. TBRC 11911 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 199370 24 100.0 38 ........................ CCGTGTGGGCAGTCGCGACGCCGAGGAGGTTGCGGTTG 199308 24 100.0 38 ........................ CGGTGTGGGCACCCGCCACGACCGGAAGGTCCCAGCTC 199246 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 3 24 100.0 38 CCCACACCGCAGCCACCCCCACCC # Left flank : CCACCCGGGCCCCGCCTTGCCTCGGCGAGACTCCTTCCGTAGCCGCATCGCCGCCGCCACAGTGCGGACAGCACAGTCAGCTGCCACCGGCGCCCAGGACGCGGGATTGCCGCACGACGGGCCCCGAATCGCCCGGTCGACAGTCGATCAGGCTCACAATGTGGGACCTGCGTCCGTTGTGCGGGACTGGCGACCACATCGTGGCAGCGGGTCCGCAATGTGGGATCCATGTCCACTATGGAGACCGTTTCCACACCTCTTACGGCTTTTGTTCGCTCGCCTTCCACGCTGTTTCGTGGACCTTGGATACTTATGGCTCACATATGGGCGTAAGTATCCAAGGTCGCGAGAAAGCCCAGCAGGTGTAACTGTTCAGCTGGTTCCGTCGGCCGGGAGTCCCCGTGCGAGGCGACGCCGCCAGGTCCGGGCAGATCCCAGCTCCCCACAGTGGCCGCCCCACCCCCGTGTGGGGAGCCGCGACGCCGGGAAGGTTGCGGTTG # Right flank : AGGTGTGGGCAGCCGCCGCGACCGGAAGGTCCCGGCTCCCCACAGCGACGGTCCGCGCAGGTCCGCCGCGCAAGGTCAACTCATCGGAGCGTGAGCGGCTCGAGAAACAGCTGAACAGTTCCAGCAGGTGGTCGGAATCGCCCGCATAATGGGACGGGCGAGGCCTGCGACCAGGCGAGTGGTTCGGCGTGATCGACGGCACTACGCCTCGCGCGGTCCCAGACTCGAATAACCCGCCGGATATACAGCAAAAATCCGGATACTTGGCCTGGCAAGCACAAGCGCAGCATCCGCACCTCGCAACGGTGCAACGGGCGTACGACTCAAGGAGAGTGACATGACCACCCTGGTGACCGGTGGCTTGGGCATGATCGGCGCCCACACCGCCCGCGCACTGACCGACCTCGGCCACCGGGTGGTTGTCACCGCGCACCGAAACACCGCGGTCCCGTCCTTCCTGACCGGCCGCGTATCCGTAGAACCTCTCGACGTCACCGACC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCACACCGCAGCCACCCCCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //