Array 1 161744-160372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOA01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161743 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 161682 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 161621 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 161560 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 161499 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 161438 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 161377 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 161316 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 161255 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 161194 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 161133 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161072 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161011 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 160950 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 160889 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 160828 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 160767 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 160706 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160645 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160584 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160523 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160401 29 93.1 0 A...........T................ | A [160374] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180233-178251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOA01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180232 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180171 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180110 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180049 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 179988 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 179927 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 179866 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 179805 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 179744 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 179683 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 179622 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 179561 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 179500 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 179439 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 179378 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 179317 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179256 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 179195 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179134 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179073 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179011 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 178950 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 178889 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 178828 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 178767 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 178705 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 178644 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 178583 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 178522 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 178461 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 178400 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178339 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178278 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //