Array 1 1939946-1940239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001441.1 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1939946 32 100.0 35 ................................ ATCCAGTGGCCGGCGAAAGTTTACTATGCCGGGAC 1940013 32 100.0 33 ................................ ATAGCTCTAGGCTTAGACAGCCTAAGCCATTTA 1940078 32 100.0 32 ................................ TTGTCGAAAAGGCGGGTGATGCAATTGGCTAA 1940142 32 100.0 34 ................................ ACTAGGTTAGAAGATCCTGACGTATTACCAAATC 1940208 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCTCCCAGCATGGGAGCGTGGATTGAAAT # Left flank : TAGTTCGGATTATGACTGCAACCTGAGGGGAAAAACAGTGCAGGGACAGCGGTGATTCGAATAAATCATTGATGAATCAATGATCTTCGCATCCTTGGCCCCGGGGAAGGTGCGGCTGGTCAACATCTGAACCGCTAAAAGTGTGTGGCCAAAATATGAATTCTATGACGGCATATTTATAAGAAATACTTTTGAAGTTGTATAGAATATGAGAATGATGGAGGTATAATGAAGGTATAACGTTGTGAATGGTGGAGAGAGAGTTAAAATAAATATTAAGGTAGGTTAGACATAAAGAGTTTTGGTACTGTTGGATACTCGGAATTATTTAGTGCGAATGTGAAGTGAACATAAAATCCCTGGGAGGTTCGCACCTCAAAATTTGAAGAAATTTGTTGAAAAGTGTAGAGAATAGTGAAGGAAGAAGTGGTACTTGAAAGAAATGTGTCACAAAATCGGTGAATAGTTTTAAAATGAGATGATTTTAATTAGTTTTTGCT # Right flank : TTTCCGGATAACAGCGGACTGAGGGTTTTGTTGGCAGTGCCTGCTTTTATGGCATGCATTGACATTATATGGGAACGTCGATAATATGATCATAGGTGATGAAAATGACAATACAACAGCTTATGCATGACATGCAGATGTCCCGTTATCGGTTATCAAAAATCAGTGGGATTCCATGGACAACTCTTGCAGATATTTATTCCGGAAAAACACATCTGGACCGATGCGGCGCAAGGACGCTTTTCAAGCTGTCCAAAGCACTTGGTCTATCCATCGAGGAACTGTTGGCGCTGGAAACAGAGCCGGAGAAAAGCGCAGCCGATGGAAAACCGAACAGAAAAATGTACTTGGAAACTGAACTGTCGGGGAGTATTCAAAAAGCAATCAAAGAATACTTGCAGGGAGAAAAAGAGCAGGTGCTGCATCTTGACTGCTTGTGGGATGAGTTATATGGAGCCATTAATGCCGACCTTTGGTCAGGCTTAATTACGGAGGAACAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCAGCATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.50,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3759912-3759548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001441.1 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3759911 32 100.0 34 ................................ AACGATGGGCGCGCGTGGATTCTATCGGGCGGTA 3759845 32 100.0 33 ................................ AGCGTTACGGGGCGGCCACGGCAGTGGGGCTAA 3759780 32 100.0 34 ................................ ATCACAGTAGGATCCTTCGCTTCATCGGACGCGA 3759714 32 100.0 36 ................................ ACACACATAATGATGTACCTACGCACATATATTTTC 3759646 32 100.0 35 ................................ ATGCTATCGCATAAAAGCGCATCAAAAGGGTCTCT 3759579 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCTCTCTACATGGGAGCGTGGATTGAAAT # Left flank : AATTATATTTTCCCCGAAAGGAAATACTGAGATGATTTTTCGCCCCTGGAGCAAAGCGATTGCGGGCCTCATGTGTTAAACTGCTATTACGATTTTTCCAGATCAAAAACTTTCGTTACTGCATAAATAAGGGAGCGAACGGTATCCGAAGGGGAAGGGGAATAAAGGAGTCCAAAAGGAACCTGATAATCCCATTCTACCGGTAGGACTTTCATAGAGTTATCAATGAAGGTATAATAGTGTGAATGGTGAAGGAAAGTTGGAGATAAATGTTAAAGTGCGTTTAGGCATAAGGAGTTTTTTGATGCTGTTGGATACTTGGAATTATCTAGTGCGAATGTGAAGTGAACATAAAATCCCTGGGAGGTTCGCACCTCGAGATTTGAAGGAATTTGTTGAAAAGTGTAGAGTATAGTGAAGGAAGAAGTGGTATTTGAAAGAAAACTGTCACAAAATTGGTGAATAGTTTTAAGATGAGACGATTTTAATTAGTTTTTGCT # Right flank : GACACTAAGGAGTCCTAGAAGAACTTCGTTTCGCCCCGCGGTAAGGTATGTTATAATTATCCTATAGTTAACCTTTATAAGAAACATTAGTGATGCGGTTTAGGCACCGAACCTTGTTTTGCCGGCAAATCCCCGTTAGCGCTCAGAAGGAGTGAGGGAATTGAACCTTATCCATAAACCCCATGACAAGTTTTTTAAAGAGACCCTCAGTGATCTTCGGACGACTCAGGATTTTTTGCAAAACTATCTGCCCCAGGAACTTCTGGAATTCATGGACTTGGAGACTGTTACCCTGCATAAGGACAGCTTTATTGAAAAAGAGTTGGAAGAAACCTTTTCCGACTTGTTATTTCAAACCAAAATCAACCATAAGGACAGTTATCTTTACCTGCTCTTTGAGCACAAAAGCTACCCCTCGCCCAAGGTTGCCCTTCAATTGTTAAAATACATGCTGAACATTTGGGAATTAAAAACAGCGGGTCGGCCCGCGGCCAAACTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTACATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3836757-3835993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001441.1 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3836756 32 100.0 33 ................................ TTACAAATTTTCCGGGAGTCGCTTGGCGTCATC 3836691 32 100.0 36 ................................ ATATCACGCACTAACGAAGTATTACCGATACCTTTT 3836623 32 100.0 33 ................................ CTATAGCCAATATCGCTATCAACAAAAGTTTGG 3836558 32 100.0 34 ................................ GACAATATTGATTTTCGATGAGATCCAGTCCACT 3836492 32 100.0 35 ................................ TTGCACGAAGCGACCCGCACCAAAGGGGCCAGCAG 3836425 32 100.0 36 ................................ CGCTTGCCTTCAAGAAGACTTTGCTCCCGGTGTTGT 3836357 32 100.0 35 ................................ ACTTGAAATACCTCCTACTTATCCTGCATTGTCAG 3836290 32 100.0 36 ................................ TGGATATCCAGGCTCAATACAATGATGACTCTACGC 3836222 32 100.0 33 ................................ GAACATCGATAATTATCCTCATCCTAAAATAAG 3836157 32 100.0 33 ................................ TCAAAATTTAAATCCGTATTCGTAATCCCTTTA 3836092 32 100.0 36 ................................ ACCCTCGATAAGTAACTTGATTTCCATTTACACAAT 3836024 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.7 35 GTCGCTCCCTACATGGGAGCGTGGATTGAAAT # Left flank : GACGGATATCCGGCCTTTATGTGGAAGTAGGTGAGATAAAATTTTAGTGCTGATTACCCTATGATGTAAATACGCAAACGGCAGCGGGGAGAAAGCGCTTGCGTCAGGTCGCCAAACAATGTGTGAACTATGGGCAGAGAGTTCAGAATTCGGTTTTTGAATGCGTACTGGATGCGGCGAAGTTCCGTGAGGTCCAACATAAGCTGGAGAAGATCATTGATGTGGAGAAGGACAGCCTGAGGTTTTATTTGTTGGGGAATAATTACAAGAATAAGGTTGAGCACATTGGTGCCAAGGCTTCTTTTGATGTTGAGGATACGCTGATTATTTAGTGCGAACCTATAGTGCACATAAAAACCCCGGGAGGTTCGCACCGCGAGATGTAAGGAAATTTGTTGGAATATATAGAAATGCGCGGGAAGGGCTGTCGGTTTTGGTGTGATACGGAAGAAGATGGGCGGAAATTGTGTTATAGGAGATAGCTTTTCCTGATTTTTGCT # Right flank : CTTGAGGCGATAGCCATTGTCGACCAGACGGCGGCCCGCAGACTCAATTGGAAAAAATGAGATCGAGTATTAATGAAAGAATGTCACGTCGTGCTTTAATAAATAATAAAAATGAGTACAAATGATGTTTAGGTTAGCCATAATTATGCCTCAGATGAGAAGTTTCCTCTTTGAGATCATTAAAATAATGCAAACTTTTATTTATTGCTTTTAGAAAATAAAAACACAGCCATATAAATATAAAAAGAGCCGCAAAGCACTAAAACAAGTACTCTGCGGCTTCTTAATTCTTAAAAATCAGCAAAAAAAGAAATTTTCTTGGTAAAATAAACCATAAAATGCAACGTTTTTGAAATTTTGTTGCATTTATGTTTAGTGCTAATTCTATATTATCATTACTGAAATGTCAACATATTGGTTTTATGTTAATAAATCTACACGAAAAAACAATTTTTATAGTTGAACCATAGAATACAGCTCGTCTTTTTGATCTTGATTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3847981-3847149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001441.1 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3847980 32 100.0 34 ................................ TCGACCATGTTCAACCAATCCTCAACGTCATGGC 3847914 32 100.0 36 ................................ ATCGTGTCTTATACAATCGCAGACATACAAACCATT 3847846 32 100.0 34 ................................ GCCGGTGATCGGATCGACAACCGCGTTGTCTTTG 3847780 32 100.0 37 ................................ ATTTGGAGGGGGAAACAATGCCGGCACCAGACGCTGT 3847711 32 100.0 37 ................................ GGGTAACGTGAATGGTGATGTCTGGCAAGTATCATCT 3847642 32 100.0 35 ................................ ATTAATAGTATTTGGTGCTATTGCAAGTGGAGTCG 3847575 32 100.0 33 ................................ TGCATCAAATAAACCGTGCGATCTTGGACGCTC 3847510 32 100.0 33 ................................ TGGTTTACCGTTATTTATTCAGTAATGCTGCTT 3847445 32 100.0 34 ................................ CAACAATAGTAGATATTAATCCCGGTTATGCGAA 3847379 32 100.0 34 ................................ ATTAGATGTCGACATGGATCAAGACGATAAAATT 3847313 32 100.0 35 ................................ GTCTTGAGTTTGAACCAAATGCAATGGATGAGACG 3847246 32 100.0 34 ................................ AGCGCCGCAGGTGCATTTCTTCTTCCAACACTCA 3847180 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 35 GTCGCTCCCTACATGGGAGCGTGGATTGAAAT # Left flank : GGACGGATATCCGGCCTTTATGTGGAAGTAGGTGAAATGAAATTTTAGTGCTGATTACCTATGATGTCAATACGCAAACGGCAGCGGGGAGAAAGCGCTTGCGTCAGGTTGCCAAGCAATGTGTGAACTATGGGCAGAGAGTTCAGAATTCGGTTTTTGAATGTGTGCTGGATGCGGCGAAATTCCGTGAGGTGCAGCATAAGCTGGAGAAGATCATTGATGTGGAGAAGGACAGCCTGAGGTTTTATTTGTTGGGGAATAACTATAAGAATAAGGTTGAGCACATTGGTGCCAAGGCTTCTTTTGATGTTGAGGATACGCTGATTATTTAGTGCGAACCTATAGTACACATAAAAACCCCGGGAGGTTCGCACCGCGAGATGTAAGAAAATTTGTTGAAATATATAGAAATGCGCGGGAAGGGCTGTCGGTTTTGGTGTAATATGGAAAAAGATGGGCGAAAATTGTTTTATAGGAGATAGTTTTTCCTGATTTTTGCT # Right flank : TTGACGGCAAAATAGCTATTGACGGTCTTCGTTTTGGGATATTGATTACGACAAATTCAAAGAACATAAAAAGAAACTAAAGGCTGGAAATGATTTGAACGAAAAGTCCTTAAGCATATTAATTCAATCCCCAATCTGCTGATACAGAAATGCAATTGAAAATAAGCTGCCCTCATGGTCTCGTGAGAATAGAATTTATTTAAATTGGTGATGATCGGCATAAATCTATCAAAGAACAAGGTTTTGCAAGTATTTATGCCGAAGATACATACAAGGAAAAGAGAATAAGGACACATTTATCATTTAGTGCGAATGTGGAGTGAATATAGAATTACCGAGGGATTCGCATCGCGAAATCATGAAGATTTTGCTGAAATATAGGAGAATATTGGATTTGTAATTGTAGTTTTTGACGAAAAGCTTAAGAATTTAGACAAAAGCCTTTACTAAAGAGAGTTTTTTATTATTTTTTGCTTCGCTTCCCACAGGGAAGCCTAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3858034-3857672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001441.1 Desulfosporosinus youngiae DSM 17734 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3858033 32 100.0 33 ................................ CTTTCATGGGGCATCTAATCCGGTAACCGCCGG 3857968 32 100.0 34 ................................ GCAGCTGGGCAATTGACAATAACTCAAAGCTAAG 3857902 32 100.0 35 ................................ TGTAAGGGGTTTGAGGAGTTAGTTGAATTCGGAGG 3857835 32 100.0 35 ................................ AGCGAGTGAGCCGTGAGACTGGTATAAGCGCAGAG 3857768 32 100.0 33 ................................ GGCTTCGGCCTGTGTAGCCGTTGTAAGTGCAGC 3857703 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GTCGCTCCCTACATGGGAGCGTGGATTGAAAC # Left flank : GAACCTTTGGTCTTAAGGAAGATTGGCTGCGCAGGGTTTTTGCTTATCTGCAAAGAGTGAAGGAATTGAACCTGAATCCATAAACCCCAGGACAGGGCTTTTAAAGGCTTTCTCCCCTTGTTATACTCTTTTTGGTCCATGATATTGCGGCGGCTTTAGAAAACGTTGGGCTGGACCTTTATGCGGGATTTCTGCACCGGGCAGGATTTCTCTGACTTTAGATTCTGATGGAAGTAATGAAGAGAGATAATCTGCGGTTTTATTTGTCAAAATAAGGTCTAGTACATTATTGTCAAGATTTTTTTGATGTTGAGGATGTGCAGATTATTTAGTGCGAACCTATAGCGTACATAAAATCCCTGGGAGGTTCGCACCGCGAGACGTAAGTAAATTTGTTGAAACATGTAGAAATGTGAGAGTGAAGTTGGCGGTTTTAGTGTAATATGGAAGGATGTGGGATGGAGTTGTTCTTTGAACAATAGTTTTTCCTGACTTTTGCT # Right flank : AGGTACCCGTTGTCTCTGCTTAAGAAGTTTATGAAGTAATATTTGTCGTGCCCGTTAGGGTCATGAAAATACTCCGCTTTTAACTATTGAGACGCCGGACAAGGAAGAAATGCTGGCGGATTTATAAATTCTATATGGCTGGGCCTGTTCTAAAATCGCAAAGGTTTGAGATTTTGGAACAGGCCTTTATAATGACCGCCTGTGATCTGCCCCCTCTTTCATCTAAGGTTTGAGATGGACTTCTTTCAAGATTTAAATACCTTTGCTTAAAAGCATTTCGGGCCAACTCTGTCAGATGTTTATTGCATTAATCCTTTACTGTATCCGCTATGTACGCAATGACTTCCTCCGGCGTTGGCTGTTCTCCCTTGTGGGGGATGGATTTCCAAAACGTTTGTGCCTGTGGCTCAGGACTTTTAAGGGCTTCCGTTATGGCAAGTTTGATTTCATGGCGTAGGGCCTCTTCGCTTACACCCTTCTGCTTGGCAAGCTTTATCAGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.00,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //