Array 1 29053-27102 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGL01000022.1 Moraxella catarrhalis strain COPD_M124 NODE_22_length_29139_cov_10.8272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29052 28 100.0 32 ............................ TGTTTAACACACCAGTGATACTGCCCCGTCTA 28992 28 100.0 32 ............................ TCTGGAGCTGCTGTCCAATCTGTTGCGATGTT 28932 28 100.0 32 ............................ AAAAAACCAGCAGTGATAGCAAAGCCAAAACA 28872 28 100.0 32 ............................ TGACCGTGTCAAGGTTTTAGTATCGGGCGATG 28812 28 100.0 32 ............................ GTCGGCTGATGATATTGGGGTGTATTTTTAGT 28752 28 100.0 32 ............................ AAAAACCCTGTGATGATTGGCGTTGAACAAAT 28692 28 100.0 32 ............................ GCTCCAGCTTTGGCGGCGGCGTTAATCAAATC 28632 28 100.0 33 ............................ CTGTGATTTTATCAGCTAAAACTTGCCCACGGA 28571 28 100.0 32 ............................ AACTTTCAATAAACTGCTGCCAGCTTTGATGC 28511 28 100.0 32 ............................ ACATCAGGTGATCAGGCAGTTTTGGCAAGACT 28451 28 100.0 32 ............................ TTGGTCAAACAAGGAGAAAAAAGATGAGTAAC 28391 28 100.0 32 ............................ AGCAAATACAGCCAAAAACCAAAGCCAAGATA 28331 28 100.0 32 ............................ GTCTTAAGCCGGCCACAACACCTAAAGCACCT 28271 28 100.0 32 ............................ ACCTTAATCAAACCAAAACTGATGACTATAGA 28211 28 100.0 31 ............................ GCGATGGGCGGTATTTGATGATGTATTTGAT 28152 28 100.0 32 ............................ ACCATCTACAAGACCATATATTTCACCCTCTG 28092 28 100.0 33 ............................ CGCTAAGAAATCATGGAACAATATTAAACGCAG 28031 28 100.0 32 ............................ TTGAACGCACGCTAACAACAAACAATCAAAGC 27971 28 100.0 32 ............................ AAAGTTACTTGTGTTTTAGTTTGGGCAAGATA 27911 28 100.0 32 ............................ AGACCAAATCCGCCATGCTTGTTTACTACCAC 27851 28 100.0 32 ............................ TTATCGTTTTTATGATGCAGTGACACGCTTTT 27791 28 100.0 32 ............................ TAAATGTTGCATTAATCAGACCAACAATAATA 27731 28 100.0 32 ............................ AAGCTAAAGAATTTAAAATCAAATGGCAACCC 27671 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 27611 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 27551 28 100.0 32 ............................ AAGCGTTAATAGCTTAAGCGAAAGCTTAGCAA 27491 28 100.0 34 ............................ AAAAAAGAAAAACCGCCAGCACATGCCAGCGGTT 27429 28 96.4 32 ..................T......... ATATTGAAGCGTCTTAGATAAATCTCTAACTT 27369 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 27309 28 100.0 31 ............................ AAAAGTTCGGTAAAACTTTTAAGTTATCTGT 27250 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 27189 28 100.0 32 ............................ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 27129 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAAC # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //