Array 1 490246-485518 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJAC01000003.1 Actinoplanes sp. LAM7112 C_Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490245 29 96.6 32 ............................C GAGGAATACCCCACCACCCACCTCGCTCTGGT 490184 29 100.0 32 ............................. GCGCTCGGCGGCGAGCAACTGTCGACACAGGA 490123 29 100.0 32 ............................. ATGTGGAAGATCGGCCAGTCGTCCGACCTGTG 490062 29 96.6 32 ............................C CCATCACGCGCCGCCGCGGCGGCGTGCAGCGT 490001 29 96.6 32 ............................C TTGTCCATGTCGCTGCGGCCTTGCCCGTCGGA 489940 29 96.6 32 ............................C GAGGGCGGGCAGCCCGATCGTTGCGGTCCCGA 489879 29 100.0 32 ............................. CCTTCCCGGGATCTCCCCGGCCTTGGTCTTCA 489818 29 96.6 32 ............................C TGCAAGGCATAGATGCCCGGTGCGGTCGCGGA 489757 29 96.6 32 ............................C TCGCCGGCCAGATACAGGTCTGCGGGGATGCA 489696 29 100.0 32 ............................. CTGGGCGCCGGGAACGTGCTCGATGGTCCGTT 489635 29 96.6 32 ............................C TCGAGCGTGACGGTGTTGCCGGCCATCAGTCG 489574 29 100.0 32 ............................. CATGTGGTGGGCCAGCGCTGAGGTGACGTCGA 489513 29 96.6 32 ............................T CAGGACGACCGACCGGCGAACAGCCGGCCGTC 489452 29 100.0 32 ............................. GTTCAGACGACCGGCAAGAACGGTCGACTCAT 489391 29 96.6 32 ............................C AGGCACCGCAATCTTGGTGACCGCAACCGCAG 489330 29 96.6 32 ............................C TGGTTCCCGCACGGTCACCCCCTCGCCCTCAT 489269 29 100.0 32 ............................. GGCACGCTCGACAGTTCTGAGGTTGAGGGCGA 489208 29 96.6 32 ............................T TCATGGTTTGGAATTGCTGCCCGACGGCCGGT 489147 29 96.6 32 ............................T CGGACCGGTTCGCGTCGTACCGGTCGTTGACG 489086 29 96.6 32 ............................C TCGGCGTCCTGCGCGCCCTGGAACCGGCGGTA 489025 29 96.6 32 ............................C TGCCGGAAGGTGGTCTTCGAGTCGTGCCGGAA 488964 29 96.6 32 ............................C AGCTCGTCTTCCGGGTTGTCCTGATGGAAGTC 488903 29 100.0 32 ............................. ACCCCCGCGCGTACGACGCCTGCGGTTGCGGT 488842 29 96.6 32 ............................C CGGGCCGATTGGAATTGGGAGCCCAAGGTGGG 488781 29 100.0 32 ............................. GTTCAGGCCGCGATGCGTGGCGCTGACGGCTC 488720 29 96.6 32 ............................C TTGCGCGCCTCGATGAGCTGCGCCTCTTGCGG 488659 29 100.0 32 ............................. CCGACCGCGTTCGCCCCGAGCGCGCACGCCTC 488598 29 96.6 32 ............................C GTGCCGTCGCTCTCGCTCGTGAACGCGAGTTC 488537 29 96.6 32 ............................T TAGTTGGAGTGGACGGTGACGATGCAGGCACC 488476 29 96.6 32 ............................A TCGGTGCCTCGGCCGGTCAGCGACGACGAGCT 488415 29 96.6 33 ............................T TCGCCTCCGCCGCCGGGTGGAAAGGTGACGATC 488353 29 100.0 32 ............................. CATGGATCGCCGTGCACCGGCCGCACCTCAAC 488292 29 96.6 32 ............................C TGGTCCTCGGAGAAGAGCGGTTCTGCCACGCA 488231 29 100.0 32 ............................. CGGTCACCTACACCGGTGGGGCTACGGTCAAA 488170 29 100.0 32 ............................. GTGCCGGGCCTGCGAGCGGCGACCGGCCCGGT 488109 29 100.0 32 ............................. GAACCATGACCTCCACCGCCGGCGGCTACGAC 488048 29 100.0 32 ............................. GCCGCGACCGAGGCCTCACGATCCTCGTAGTA 487987 29 96.6 32 ............................C CGCTACGGCAATCGCCATTGCCGAGTCTGGCG 487926 29 96.6 32 ............................A GAGGTGACGGTGGTCTACACCGGTGACGCCGT 487865 29 100.0 32 ............................. TCGCGCGTGAACGGGAACGGGAAGACGCCCGT 487804 29 96.6 32 ............................A CGGAGTCGAGGCCGACTTGTTGGGGAGCGGGC 487743 29 96.6 32 ............................C GAACTGGGCTGGGGCATCGTCCACGAAGTGAG 487682 29 100.0 32 ............................. CAGCTCGGTGGCCAGCTCAACCGGGCGCTGAA 487621 29 100.0 32 ............................. TGACCCGCATCAACGTCTTCGGCGCCACTGAG 487560 29 96.6 32 ............................C TCGACCTCGTACGGCGACCTGACCGGCTCGGG 487499 29 96.6 32 ............................C GCCCACCGGAGACCGACGTACAGGCCGATCTC 487438 29 100.0 32 ............................. GGCGAGGGTCCCGGCACCTGCGGCGTCGAGTG 487377 29 96.6 32 ............................T CGGGAAACCGGTGCTGGAGGTGAGCTGCTGGG 487316 29 93.1 32 ........G...................T GCATTCGAAGTCGGTCCGGTATGCCTCGGAAA 487255 29 93.1 32 ........................A...A TGACGGTGCTGCTGGTGCCGGGGCGGCGGAGC 487194 29 93.1 32 ..........T.................C GTGTGCTCCACGCGCCAGGCTTCGACCGGTGA 487133 29 96.6 32 ............................C GTGTGCTCCACGCGCCAGGCTTCGACCGGTGA 487072 29 96.6 32 ............................C GGCATGGCGATGGTCCTGAACGACCTCGTCAT 487011 29 96.6 32 ............................C CATGTCCACTGTCGAAAAGTGGCTGACCGGCG 486950 29 100.0 32 ............................. CAGCGCCTCCCGAAGGTCTGCCGGGTATGCCG 486889 29 100.0 32 ............................. GTCACCCACGAGTCCGGCGGGTCGAAGCCGGT 486828 29 100.0 32 ............................. GAGGCCCCACTATGAAGGCATCACTCGTCTGG 486767 29 96.6 32 ............................C CAGTCCGTCACCGGCGAAGCCGAGCGCCTCCT 486706 29 96.6 32 ............................C GGTCGTGATGTTCGACCTCAACGCGGCGTACC 486645 29 96.6 32 ............................T CCGTGCTCGCACGCATCCGCAAGGCCATCGTC 486584 29 96.6 32 ............................C CCACGCCACACGTGGCCGGTGATCAGGTCAGG 486523 29 96.6 32 .............G............... ATGTTGCGGTTGGCGTTGTAGACCGAGTTGAT 486462 29 100.0 32 ............................. GGCGGCAAGGCCGCAGCCATCACCCGCAAGTT 486401 28 93.1 32 ........-...................C TAATGGGATCGGTCGGACAGCCGATCAGCGTT 486341 29 100.0 32 ............................. TTGCCGCGGACCGCGGCCGAGCAGCAAAAGAC 486280 29 100.0 32 ............................. GCTCCCTCGCGGACATCACACCCTTCGCGTTC 486219 29 96.6 32 ..............T.............. GCGACGTACCGCAGCTTGAGGAACAGGGTGCC 486158 29 100.0 32 ............................. CAGCGCCGGATTGGTCCGGTGTCGCCGCGGGT 486097 29 100.0 32 ............................. TCGACCAGCGCCGCGCGATGCGGAACCACGCC 486036 29 100.0 32 ............................. ACGCGGTGGGCACTGCGCATTCACGGCGGCAG 485975 29 93.1 32 ..A................C......... CTGCGCCCCGCCGTGCCCGTGGTGCCGGGGAG 485914 29 96.6 32 ............................C GGGAGAGCCTCGTGGAGCGCGCGGAGCAGTCT 485853 29 96.6 32 ....................A........ ATCGCCGGCGTCACGAACGTCGACCTCAACTG 485792 29 93.1 32 .....................G......C ATGGTCATCCCGATCATGACCAGCACCCCGGC T [485787] 485730 29 89.7 32 .....................G.....TT TCCTTACGCAGAGCCGGAATCCGCTCGAATTC 485669 28 79.3 32 T.......-.....G......G....T.T GGGACGCCGACCATGTCAGCGCCTTCCCGGAG G [485648] 485608 29 93.1 32 .....................G......C TCCTGCACCTTACGCAGCAGGGCTTGCTCAGC G [485586] 485546 29 65.5 0 ...........AG.T......G.TCGATA | ========== ====== ====== ====== ============================= ================================= ================== 78 29 96.8 32 CTGCTCCCCGCGCACGCGGGGATGGTCCG # Left flank : TGGGCGCGGGTGACCGAGATGGCCGGGCCCGGCCGCGCACTCCTGGTCTTCCAGAAGCGCGGTGAGCAAGGACTCTCGTTCGCGGTGCACGACCATCATTGGCAGCCGGTCGACCTGGACGGCGTGACTCTGATTCGCCGTCCCAGCGACACACCGTTCAACCCCGCAATCCCAGGCGGCTGGAGCAAGGCGGCCAAACGTCGCCGCTTCGGCGGGCGAGGCAGGCCGGCGTAGATCCGAACAGCGGATTCGAACATCAGCATCTGCTCGTTGGCTCTAAGATCCATATTCGGACTGGCGCGCTCCCGCACAGACGGAGACAACCGTCGTTCTGATCTCTTCATTTCGTGAGCTACTGTCCACATATGCGATGGCCGGATCGAGTAGGTGAGACCTCCCGGGCTCCCAGGTTCGTCGACGCCTGCCCGCGCCGCCCGAGCCGCCAAGAGCGAGTGAACAAAATCCAGCTAGTTGATCTCCAGCGCCGCAGGTCAATTAGT # Right flank : GGAAGGGTTCTCTCCTGCGCCCCGCTCGCGCGAGGTGATTCGTCGTGCTGTTCCGCATCCCGGCCGCGTGCGAATGCCCTGCGCAGCGGGTAGCGGGTTATCCGCCCTCATGGTTCGCGGCGGTGGCGGCCGGCGCCGTCGGTGTTTGGGGTTGACGCCGGGGCGGGTTCGTCTGGTACGGCGGCTTCCGGGTTGGGGCTGACGGCGGCCACGCCCTGTTTCAGCGCCTCCTGAGCGCCGGGCGCGGCGTGCTCCTCTTCCTCGAGTGCTTCCGCGCCGGCTTTCGTGCGCAGCGGCACCTCGGGCAGGAACAAGAAGATGATCAAACCGAGGACCATGACGCCGGCGGCGATCAGGAAGATCATGTCCATCGAATCGGAGAAGCCCGCTTTGAAGGGGTGAGCCAGGATCGGATTCAGCTTCTCCAGGAACGAAGTGTCGTTGAGGTCCGCGGTTTCCATCTGGCCGGTGCGCAGGGCCTCGATGACCGGCGCGTTGGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 506483-509120 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJAC01000003.1 Actinoplanes sp. LAM7112 C_Contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 506483 29 100.0 32 ............................. GGTGACGGAACCGTACCGCGGGCGGTCGATGG 506544 29 100.0 32 ............................. AACAGCTCGATCGTGATGGGCGCCGAGGGGAT 506605 29 96.6 32 ............................T GCACTCCGACGGCGGTGTGCCCGCGCTGCGGC 506666 29 96.6 32 ............................T CCGACCAGGCCGAGAAGTTCCCGGCAGCATCC 506727 29 100.0 32 ............................. TCGATGGTGTTATCCGCGGCCTCATGGACCTC 506788 29 96.6 32 ............................G ATGCTCACCGACGCCGGGATCCTGCTGCCCGA 506849 29 96.6 32 ............................G GACCCCATGACCACCGCCGAGGAGACCCCCAC 506910 29 100.0 32 ............................. GTGAGGACCATGTCGTGCACGTCAGCGCTCTC 506971 29 96.6 32 ............................G ACGTGGGCGGAGTTGGCGCCCACGCTCGGCAC 507032 29 100.0 32 ............................. ATGATCCGGGCCCGGCAACCGAACATCGACCA 507093 29 100.0 32 ............................. ACGCACCCGCCCTGCTGCTTGTCGTCGACGTC 507154 29 96.6 32 ............................G GTGCTCTACGCGGGAGGCAGCCGCACCGTCGT 507215 29 100.0 32 ............................. CGTCGCATCACCGCACGAAGGACATAGACGTG 507276 29 96.6 14 ............................G CAAGGCCGCTACCT Deletion [507319] 507319 29 86.2 32 ..A.C..A....................G GTAGACGTCCTGGTCACGAAATACACGCAGAC TTGGGGAA [507329] 507388 29 96.6 32 ............................G CCGAGAAGTGGCAGAAGACCTCCGGCCCGAAC 507449 29 96.6 32 ............................A CAGCACGGCGTGAATGACCAGCCAGCCGACCA 507510 29 100.0 32 ............................. AACACGATCGGGAAGCTGTCGTGGACGGTGCC 507571 29 100.0 32 ............................. CCGCGCCCGTTGGAGACGTTCACCCAGACCGA 507632 29 96.6 32 ............................G GATGCTCCTCGGGTCGAGAATCAGCGGGACCC 507693 29 100.0 32 ............................. GACTGGCTGGCGAAGCCGGAGAACCGCAAGAA 507754 29 96.6 32 ............................G GGTTTTCAGATCCGGCCCCCGAAGGAGGGGGA 507815 29 100.0 32 ............................. ATGTCCGTGAAGCCGTACCCGCCACGGGCGAA 507876 29 96.6 32 ............................G TTCCAGCGCTTCGTTCCCCAATGCGTGTAGCC 507937 29 100.0 32 ............................. GACGGACCGCTGGCCGGGCGGACCGTGCCGCA 507998 29 93.1 32 .....................A......G GTGTCGGCCAGCATGACGTCGTCGAGGCGCAT 508059 29 93.1 32 .....................A......T GAAGACCCACTGGTCACCGCGGCACGAGACCT 508120 29 93.1 32 .....................A......G GCTTCCTGGCCGAATTTCCAGCCGGCGAAGTC 508181 29 96.6 32 .....................A....... CAGGCCCGGGCTTCCTGCGCAGCGATCCTGGC 508242 29 89.7 32 ......T..............A......T GCGCGCCAGACACCGTTATCTGTGACTCCGTA 508303 29 96.6 32 .....................A....... TTCTGTGTCTCGACCTTGTTCAGACCGAGCCT 508364 29 89.7 32 .....................T.....TG ATGGCCTTGGTCTGGTCCTGGGTGGGGAACAT C [508369] 508426 29 96.6 32 .....................A....... GGGTCGTTTCGCCAGAGACAGAGACAGAGACA 508487 29 96.6 32 .....................A....... CATGCCCGGTTAGTCTCGATACCCTTCGTCTT 508548 29 93.1 32 .....................A......G GCCACGAAAAGTCAACGGCGGCGGAAGACGGC 508609 27 82.8 32 .....--.A............A......G GTGGTGCCGTCCGCACCCACCCACTCAAAGAA 508668 27 82.8 32 ..........T...--.....A......G TACCGCTACAACTCACGCGGGCAGATCGTCAT 508727 28 79.3 30 ....-......TT...T....A......G TGGCACGGCAGTGGCCGCGATCGACTGGAT 508785 29 86.2 32 ...T............T....A......A GCCGACCTGGCCGAGACCAAGGACTGGGTCGA 508846 28 89.7 36 ..........T......-...A....... ACGTCGGCCCAAGTCGGTCGCGGGCTAGGATCGCGG 508910 29 89.7 32 ..............T......A......T TGGTTCTACCTGCACGAGAACTGCACCGCGCC 508971 29 89.7 32 ............TG.......A....... ATCGCTAGGAAGGCGGCCTGGGTCGGTGCGGG 509032 27 72.4 33 ...........TT.T.--...A..G.T.. GGCCATTCAACGGGCGCCCAGGCTGGCTCAGAC 509092 29 75.9 0 T....T..T..T.G.......A......G | ========== ====== ====== ====== ============================= ==================================== ================== 44 29 93.9 32 CTGCTCCCCGCGCACGCGGGGCTGATCCC # Left flank : CCGGTGTGCTGTCCCGCCCTGAGAACGTACGGCTGGCCGGCCGCGCTTCCAGCACCAGCACCGGCACGCGCCGCATCGACGTCAAACGGCTCGCCATCCCAGTGCTCCCGTACGACCAACAGTGCCGTCACGGCCAGGCGTTCCGCCAGCTCACCGAGTTCCACGCAAGACTGCGCGACCTAGCCGAAACCGGAGAAGACCTAGCCCGCGAACTTAACGACGGCCTGATCCGAGGATCCCTGACCACAGCGGCGGAGTGATAGGAAGACCAAGCTTGTTGAGCGTCAAACCAACGTGCTCCAGCCGAACCAGGCGCGGTCTCAAAGAGACCGCGAACGCCGCGCCGCACGTCGACACCTGATCGATTGGACCGGTGGGAGGATCGAGAATGCGAAATATCTCGGGTGGACCACCGGGACAGCCAGGCCCATCAAGACACCCAGCCAAACCAAGTGAACAAAATCTGCACAGTTGATCTCCGGAGCCCCAGGTCAATTAGT # Right flank : GATCGCAATCAACGGTGCGGACGGGCCGGCACCTGCTCCTCGCATGCGGGGGTGAGCCGTACATTTGCACGCTCGAGGACAACCTGAACACCTGCTCCCCACCTTGGTGGGGTTAGCCGTGCGGCGGCGCCGCCGTCCGGGTGACTGGCTACTGCTCCTGGTCAGGAACAGCGCTTTTGCACCGGGGAGAGCCATTCGGTCAATGTCGGGCCGACGGTCTTGTCGACGTCAGCCGGGGTCTTTATCGCGGCGAAGAACGCCGCGTCGGCCGACCTCGCCTGCATGGTCTCGGCTGACTTCTGGCCGGCTTGCACCAGTTCGGCGTCGGCGCTGGTGGCCGTGGCCTCTTTGACGGCAGTGGCGAAGGTGGCCAGAGACTTCTGGGCCGCTGGCAACGCCTTGCGGTCGGCGACGTAGGCCGTCAGGGACTCGGCGAACGGGCCCATGTTCTTCTCGTATGCGCGCCCGAGCACCTCGCACGTCGTCTTGACAGCGGCCAG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //