Array 1 510493-510717 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952644.1 Alloscardovia omnicolens F0580 Scaffold75, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 510493 27 100.0 37 ........................... CAGCCTGATACCACGCGGTCACCTCTATTCAGCTATT 510557 27 100.0 40 ........................... CAGCGCACCAACGTACTCATCATTCCTACTTATTCCTATT 510624 27 100.0 40 ........................... CAGCGCACTCTGCCATCACGTCCAACCATTCCCACCTATT 510691 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================== ================== 4 27 100.0 39 TTACCAAAGAGGATGAAAGCTAATTCA # Left flank : AAGCTAATTCACAGCGCACTCACGTTGGAAGCTATCCCACTCGCTTCTATTTTACCAAAGAGGATGAAAGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACCAAAGAGGATGAAAGCTAATTCACAGCTCCAGTTAATCATATTCTTCCCCTTATGCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACCAACGTACTCATCATTCCTACTTATTCCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACGCCACTCTGCGATTAGTCCACGCTATTCTATTTTACCAAAGAGGATGAAAGCTAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTACCAAAGAGGATGAAAGCTAATTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952645.1 Alloscardovia omnicolens F0580 Scaffold92, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1 28 100.0 36 ............................ CAGCCGGTTGGAACTGTGACGTTTTCCGCTTACTAT 65 28 100.0 39 ............................ CAGCGCACTTGATAGCGGTAATGGCAGTTACAGTACTAT 132 28 100.0 39 ............................ CAGCGCACAGTCACGTAAGACTTTGCGCGTGGAAACTAT 199 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 100.0 38 TTTACCAAAGAGGATGAAAGCTAATTCA # Left flank : | # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCAAAGAGGATGAAAGCTAATTCACAGCTTAAACCGTAACGATAATTCATATGCGTCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACTATACTCCTGATGAAATGCATGATATGCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCCTACTCACGGGTTTTATCCTTTACTTCTATTTTACCAAAGAGGATGAAAGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCAAAGAGGATGAAAGCTAATTCACAGCCCTTGCCCTTAGATACGCCTTTAACGAGCTATTTTACCAAAGAGGATG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACCAAAGAGGATGAAAGCTAATTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 706-932 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952645.1 Alloscardovia omnicolens F0580 Scaffold92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 706 31 100.0 33 ............................... ACAGCGCACCTAGCTATTAGTATCACACCTGAT 770 31 100.0 34 ............................... ACAGCGGTCTATGTCGTGCAATAAGTTGTGATTT 835 31 100.0 36 ............................... ACAGCGCACACTGAAGTAGATAAGCTTTATTTTTTT 902 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 100.0 35 CTATTTTACCAAAGAGGATGAAAGCTAATTC # Left flank : AAGAGGATGAAAGCTAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCAAAGAGGATGAAAGCTAATTCACAGCTTAAACCGTAACGATAATTCATATGCGTCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACTATACTCCTGATGAAATGCATGATATGCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCCTACTCACGGGTTTTATCCTTTACTTCTATTTTACCAAAGAGGATGAAAGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCAAAGAGGATGAAAGCTAATTCACAGCCCTTGCCCTTAGATACGCCTTTAACGAG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAAAGAGGATGAAAGCTAATTCACAGCCGACCAGACAACCATTCTCGCCGCATTCCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACACCGTCTTCAAAGTCGCACGCACGCAACTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACTTCTTCCCAGATTTGAGAACTCATAATCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACCAACGTACTCATCATTCCTACTTATTCCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACGACAATCGCGAACACGTTGGTGGACTTCTATTTTACCAAAGAGGATGAAAGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTTTACCAAAGAGGATGAAAGCTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 1332-1091 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952645.1 Alloscardovia omnicolens F0580 Scaffold92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== =========================== ================== 1331 40 100.0 27 ........................................ GAATAAGTAGGAATGATGAGTACGTTG 1264 40 100.0 27 ........................................ ATTATGAGTTCTCAAATCTGGGAAGAA 1197 40 100.0 27 ........................................ TTGCGTGCGTGCGACTTTGAAGACGGT 1130 40 100.0 0 ........................................ | ========== ====== ====== ====== ======================================== =========================== ================== 4 40 100.0 27 GTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAG # Left flank : AAATCTCTCAACCTCTGATACAATTCACGTTGTCTAGGATTACACCATTCTTGCTGTGAATTAGCTCTTACATCCTTTGATAAAATGGGAAGACGTAAGCGGAAATTAAATAATCGTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGCAAGCGGTCTGAAAAGCGGCAATCCAGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGACGCGATTTAACAGTAGAAAGTTACAGGTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGATTTCCTAAAGTTAACTCTTTGGTAATAGCTGTGAATTAGCTTTCATCCTCTTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTAGCTTTCATCCTCTTTGGTAAAATAGAAGTCCACCAACGTGTTCGCGATTGTC # Right flank : GAATGCGGCGAGAATGGTTGTCTGGTCGGCTGTGAATTAGCTTTCATCCTCTTTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTAGCTTTCATCCTCTTTGGTAAAATAGAAAAAAATAAAGCTTATCTACTTCAGTGTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGAAATCACAACTTATTGCACGACATAGACCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGATCAGGTGTGATACTAATAGCTAGGTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAGCTCGTTAAAGGCGTATCTAAGGGCAAGGGCTGTGAATTAGCTTTCATCCTCTTTGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGTGAATTAGCTTTCATCCTCTTTGGTAAAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1546-1781 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952645.1 Alloscardovia omnicolens F0580 Scaffold92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================= ================== 1546 38 100.0 29 ...................................... ACCTGTAACTTTCTACTGTTAAATCGCGT 1613 38 100.0 26 ...................................... TGGATTGCCGCTTTTCAGACCGCTTG 1677 38 100.0 29 ...................................... ACGATTATTTAATTTCCGCTTACGTCTTC 1744 36 84.2 0 .C......T...--......................AA | T,G [1764,1767] ========== ====== ====== ====== ====================================== ============================= ================== 4 38 96.0 28 CTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGC # Left flank : GAAAGCTAATTCACAGCCGACCAGACAACCATTCTCGCCGCATTCCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACACCGTCTTCAAAGTCGCACGCACGCAACTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACTTCTTCCCAGATTTGAGAACTCATAATCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACCAACGTACTCATCATTCCTACTTATTCCTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGCACGACAATCGCGAACACGTTGGTGGACTTCTATTTTACCAAAGAGGATGAAAGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAAAGAGGATGAAAGCTAATTCACAGCTATTACCAAAGAGTTAACTTTAGGAAAT # Right flank : AGAATGGTGTAATCCTAGACAACGTGAATTGTATCAGAGGTTGAGAGATTTTTCGATCCTGAGTAGGTATTGTTCTAAATGAAATTCGTTTGTTGTCATCATGTTTTTGGGTGCATCAATCATTTTGGTAAGCGAGGTCTTATAGCTATCGGAGATAGCCCACACCCCTTAACCGATTAACCCCCATATTTCCCAACGCTCCCACACAATCAAAAAATCTCGAAAATATCGTTAAATTTTTCTCCTTTTTCAGCGTGTTGCACTTATATAGAGCACCCGGTTCGCGTTAAAGTAGTGTACGCGCGAAAACACGAAAAGAGAGTGCAAACAGCACGACGATAATCAACGTACAGCACAGAAGACAGGCCAAGGCGGAGAGCGTGTACGAAACGCGAGAGGGGAGCGGCGAGAGCGAATCAGCGCCGCAACGCGAAACAAGAAAAAGCAAAAATAAAGAAAACAAAACCTCAACAAACCGAGGTAATGCTGCGCGACCAGAA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTTTACCAAAGAGGATGAAAGCTAATTCACAGCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //