Array 1 1641656-1640848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072793.1 Thiothrix unzii strain A1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1641655 28 100.0 32 ............................ GTTGCGACAAATCAGGCCATGACGCTGATGGA 1641595 28 100.0 32 ............................ TAAACCCAAGGACGGCAAGGTAACGACGAATC 1641535 28 100.0 32 ............................ TAGCAAAGTTGCCACTGGTGCAATATCAAAGC 1641475 28 100.0 32 ............................ ACCGTGCGCCAAATCAGCACACCCCCGCAAAC 1641415 28 100.0 32 ............................ TCCAATTCCACCATCGGCAACGACTACACACT 1641355 28 100.0 32 ............................ GTATCAGGAAAGCAGTGAAGAAATACACGCCT 1641295 28 100.0 32 ............................ GCATGGCGACGATTGCCGATGTGGTGATGGTG 1641235 28 100.0 32 ............................ ACGCAAGGGCAAGTATTTAGTAGTGGTGTATA 1641175 28 100.0 32 ............................ ATCGCGTTAGCCGCAGCAGGTTATGCCGTGGA 1641115 28 100.0 32 ............................ ATGTGTTTGATTACTCAAATCATAGCACAACC 1641055 28 100.0 32 ............................ CCGCGTAAACTCCTTATCGACGATGCCATTCT 1640995 28 100.0 32 ............................ AACACATCGACCTCTCTAATCACCTGTTGCGC 1640935 28 100.0 32 ............................ AGCGCGTAAACCCACCATTGCATATCACTGAC 1640875 28 92.9 0 ....................T...T... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTTCACTGCCGCACTGGCAGCTTAGAAA # Left flank : CAGGCAGAAATGCTGGGGTATGCGCGTGAGCATGAGGAGTTTTTGCTGTGAGTCAGTATGTGTTACTCAAACATCTGCGGGTGCAGAACGCGAATGCGATTGCCAGCCCGTTTACCTTTGGTTTTCCGGCGGTCACGGCGTTTATGGGTTTGGCTCATGCGCTGCAACGCCACTTGAACCCGACGGCTGACCCTGATGAATTGCTGATTCGGGGTGTGGGGATCGCGAGTCATGCGTTCACGATGCAAGACCATCAGGAAAATTACAGTCGCACGTTACGTTTGACCGCGAATCCGCTGGATAAGGATGGCAATCGCCCGTCATTTGTGGAGGAGGGGCGGTGTCATTTGACGGTTTCGTTGGTACTGGAAGTCGATAATTTACCGGATGGACGACCGTTGGAACGCTTGCTGGCGCAGTTTGAACCGTTGTTGCTGGCGCGGTGCAAATTGGCGGGTGGCGATGAAAAGCCACTGTGTAGTGCGGTAGGTAAATTTACC # Right flank : AGTAGGCTAAACGGTTTGTCACACTCGGCGATCAAGTCCCAGTGCTACCACGGCGATGCAATGATTGATTCTTTCAAATAATCACCGTGCGCATCCGGTTTTTCTGCAATGGCTCGATAAGCGTTACACTGTGGCGTTGTATGTTTCAACGAAAGCAGGAGAACCTTATGCAGCCCACGACACGCCCGTTACCCGAATTGATGTGGTCGTTAGGTTACGGCGGTTTGTTGCCGTTTCTGGCGTTAAGTGCAGCGTTGATGTACGAAACCAGTTTGCCCGGGCTGGAAAATGTGCGCTTGGATTGGTGGTTGGCGGCGTATGCGGCGATTATTCTGAGTTTTCTGGGGGCGGTGCATTGGGGCGTGACACTGGGAATGCTCGATAAATTAGAGCAGCGCGAACGCACCCATTTGCTGTTGTTTAGCGTTGTTCCGGGTGTGTTGGCGTGGTTTGCGTTGTTGTTGCCGATTCAGGGGGCGTTATTCGCACTAGCTGGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACTGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2809738-2803882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072793.1 Thiothrix unzii strain A1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 2809737 28 100.0 37 ............................ CGGCTGAGGTCAATCATATTGCCAGTGTTGGCAAAGT 2809672 28 100.0 35 ............................ TTGGATGGGTTGAGCGGATCTACCGTGAAACGCTG 2809609 28 100.0 36 ............................ ATCACCAGCAGGAGGATAACTACAGCCAGCCGGATT 2809545 28 100.0 36 ............................ TTGCTGGGGGCTGTTGATTGGACTCCTTTTGATAAT 2809481 28 100.0 36 ............................ AATTCTTTTATTTTGCCACGTTGCGGAGAATTACCG 2809417 28 100.0 36 ............................ AGATTGATGATTAATCCCCACAAAACGCGGGGAACA 2809353 28 100.0 36 ............................ TTACGAACACCGCGCCCTATTCCAGCGTGGGCGGTG 2809289 28 100.0 36 ............................ GGAAAACAATTCCCAGAGTTTTTAATGTGGAAAAAA 2809225 28 100.0 36 ............................ GCCAGCGAAGACTTGCACGACCTCGCCGAAAAACTC 2809161 28 100.0 37 ............................ GCGTGGAATTGGTGTTCCCACGTTTCGTTCATTTGCT 2809096 28 100.0 36 ............................ TTGATGTGATTTTTCGCGAAAAGCTGCGGGCGGATG 2809032 28 100.0 37 ............................ TTGTTACGCCAGCCGGAACCACAAACGTTCCTGACGC 2808967 28 100.0 36 ............................ TTACCCAATGGCATACGACACTATCGACGGCAAAGA 2808903 28 100.0 36 ............................ ATTGATTGCCATGAGAGCGTTTCCACGAACGCGGGT 2808839 28 100.0 37 ............................ TTGTTACGCCAGCCGGAACCACAAACGTTCCTGACGC 2808774 28 100.0 36 ............................ CAGGGTCTTCCGCCTCACCAATCATGCAAGGATAAG 2808710 28 100.0 35 ............................ GAGGATTGGAAGGAGGAACCGCAGCAATTAAACAA 2808647 28 100.0 37 ............................ TTTTGGCTTCGTGGTTTTGGGCTTGTTGGCTGGCTTC 2808582 28 100.0 36 ............................ TCAGACAAATCACAGCCTTAAAGAGCAAAATAAAGA 2808518 28 100.0 36 ............................ TTAAATCGGCTGGGAAAGAATTGGCAAATTGAGAAT 2808454 28 100.0 36 ............................ TTATGGATTACAGCACAATCAACAATGTATTTAAAA 2808390 28 100.0 36 ............................ ATAATCGCCGCGCAACTTCCGCGAATCTTCCAATTC 2808326 28 100.0 36 ............................ GTGTTTTAATGCTTTTAAAGAAGCTTTACCAAAAGA 2808262 28 100.0 36 ............................ CGCGCTTGCCACAAAATCAGGAGTAAGCCAGAAAAC 2808198 28 100.0 36 ............................ GATACAAATCAATACATTGTAGGCAACCTACCCGAA 2808134 28 100.0 36 ............................ GCGTTAGTCTCATTTGCCGGGATGTTGACAGTATGT 2808070 28 100.0 36 ............................ AGGACATGGACAACATAAAGTGTCTTGCCTGTTCGT 2808006 28 100.0 36 ............................ TCATCAAGACAAAGCTCTAAAAAGTTAACTTTAGGA 2807942 28 100.0 36 ............................ ATGCGTAAATGGTTAGTTCGGCATGGTGTTTCCGGT 2807878 28 100.0 36 ............................ TTGCTGGGGGCTGTTGATTGGACTCCTTTTGAAAAT 2807814 28 100.0 37 ............................ AGTGCTTGACGCACAGCAGGGAGTGAGCCTAAAAACA 2807749 28 100.0 36 ............................ CCAGAAACCCAATAGAGTTAATAATCTTTTGTTCGT 2807685 28 100.0 37 ............................ CAGTTTCGCGGCCTGAATTACTCAAACCGTGAGCATA 2807620 28 100.0 37 ............................ TCCCCAATAGTCATAAGCAGCAACGCGAACATAATAG 2807555 28 100.0 35 ............................ TCAGGAAAAAATGTGGCGATATTACAATAATGCGC 2807492 28 100.0 36 ............................ CGCTTGCAGTTGCGCCTTTTCATCCGCAATCTTTTT 2807428 28 100.0 36 ............................ GCGGAGGCTGCGAGAAGCAGCACGCCGTTAATTATT 2807364 28 100.0 36 ............................ CGTGATGATGCTTTCTGCACTAACGGGCTTTCTGCT 2807300 28 100.0 36 ............................ ATGCAAAGCCGCTGGCCTCACGGGGCTTGCGGAACT 2807236 28 100.0 36 ............................ CCTTCCGGGCAAACAGCAATCAGGTCATAGATTACA 2807172 28 100.0 36 ............................ AGAAAAACAGAGCGTCGATAACCTTCATTCGCCAAG 2807108 28 100.0 36 ............................ GGAAAATGGAGATAAAAGCGACAATGCCGCCGTCGT 2807044 28 100.0 36 ............................ AGGCTAATGGAAACACTAAATCTAGGCAATACTCGT 2806980 28 100.0 36 ............................ GGGGGCGATAGTGGCGATATTGATAATGCTGTAATG 2806916 28 100.0 36 ............................ CCGCGCCGCGCCCGATCAGAGATCATGGATTCCAGA 2806852 28 100.0 37 ............................ TGTTTATGCTAACGGCTCTTGTTTGGGTTGCTCCACT 2806787 28 100.0 36 ............................ CGCCAATTTTGAATATTTCCCCATGCCGCGCAACGT 2806723 28 100.0 36 ............................ GAGTTCAATATTCATTTTCTACTCCTGTGATTCGTT 2806659 28 100.0 35 ............................ GCGTAACCAGCGTTTTCCGGGGATTGCACTGTTTA 2806596 28 100.0 36 ............................ TGAGCGGCGAGTCAGAGTGGGTGGGGTGCAGTTCAG 2806532 28 100.0 36 ............................ CGTCGCCTCGCCTGATATTTCCAGCCACAAGTACGG 2806468 28 100.0 36 ............................ CGTGCAGCATTAACCTGCCCGCGCAAGCTATACGAG 2806404 28 100.0 36 ............................ TCGTAAACGGATAGCCCGCCAGCTTGATGTTTTCGG 2806340 28 100.0 36 ............................ CAATGCTCATTGCATCCAGCAATTTCTGTCCAGACT 2806276 28 100.0 37 ............................ CCGTGCAGCATTAGACTGCCCACGCAAGCTATATGAG 2806211 28 100.0 35 ............................ CCACCAGGGGCGATAGTTACGCCCCCGATAGCCAA 2806148 28 100.0 36 ............................ AATCATCGGCAAAATGGTGTCGCCGAGTTGGGTCAT 2806084 28 100.0 36 ............................ GGATTTGCACGCCTTTGCCGATGTCGGCTTGGAGCT 2806020 28 100.0 36 ............................ GAGCCAGCTCAATGGCTCCTCTTGTGCCTTTAATGC 2805956 28 100.0 36 ............................ GGATTTGCACGCCTTTGCCGATGTCGGCTTGGAGCT 2805892 28 100.0 36 ............................ GTTTTGGCACATCCACCAAGACCCGTCCCCCATGAT 2805828 28 100.0 36 ............................ CAACCACTTTTAAGACACCCCGAACGCCCGTATCGG 2805764 28 100.0 35 ............................ CCGGTGCAAGCCGTGCCGGGTTTGCAACAGCCAAT 2805701 28 100.0 36 ............................ CGATCAAGCAGAATTACTGAGCAACCTGTTTGGCGG 2805637 28 100.0 36 ............................ TTAAATTGATGGAAGCCATTGATATAGTTGATAAGA 2805573 28 100.0 36 ............................ AGATGCTTTGGTTGATCCTGCCGGTGCTGAATATAT 2805509 28 100.0 36 ............................ TCTTAACCTTGCGGTCAGCCAACACTTCACCGGCGC 2805445 28 100.0 36 ............................ ATAACCATGCCCGGTTACATCATGCCGCTTTATTGC 2805381 28 100.0 36 ............................ ATGCCCCAACGCCATCGTGTCCGCTAATACGTCAGC 2805317 28 100.0 36 ............................ GGTCACTACATCCGCAGCGGCGTTATTGTCCCAGAG 2805253 28 100.0 36 ............................ AAAGGCACGATTGTTACCAACGAGGAGGAAACCGCA 2805189 28 100.0 36 ............................ GGGAGGCACTCGCAACATTTCAGCGACCGCAGGATC 2805125 28 100.0 36 ............................ CAAACGGAAATAGGGAAGTAGCACCCGCGCAATTGC 2805061 28 100.0 36 ............................ AGTGCTTCCAGCCGTCATGTGGCTGAACCAGTTCGC 2804997 28 100.0 36 ............................ CCAACTGCACCGCTTGACCTTCCGGGAATACCGCCG 2804933 28 100.0 37 ............................ CCGGGCAAACTATCGAGATAAAGAATGCCAGCGGAAA 2804868 28 100.0 35 ............................ CAGGTGGAAGTCATCAATGATTTCAGCCGCGACGT 2804805 28 100.0 36 ............................ TTCAGGTTGTCGAGTGTTAGCCGGTCACGCTTGACG 2804741 28 100.0 36 ............................ CTGTTGGTTTGCGCCCAAAGCTGCCCGCATCGGTGC 2804677 28 100.0 36 ............................ TTTCGTCCTTGTCGGCTCCAATGTCCCTTAAAAACT 2804613 28 100.0 37 ............................ CGGTTGAATATCCTACTATGTAAGTAATCGCGGAAAT 2804548 28 100.0 36 ............................ CCAATTTTATCGGACAAATCGCTATTGTTTTGCACT 2804484 28 100.0 36 ............................ ATGTACGAACTAAGCGCGGTCGTATCAATGCTAGTC 2804420 28 100.0 36 ............................ CTGCATGGCGATAACGCCAAGATGCAATTGTCGCTG 2804356 28 100.0 36 ............................ TCCGCGCCAGTTGCGCGGTTTCGTCGGTCGTTAATT 2804292 28 100.0 35 ............................ TACCACTTTTACGCGAAACAGTACCACTTTTACGC 2804229 28 100.0 37 ............................ GCTGAGCTTTTCAGCTTTTCCGTCACGAGATCGTCAG 2804164 28 100.0 37 ............................ CCGTTCCTTGCATCTCCTGCTGGGGGAAGTATCACAG 2804099 28 100.0 35 ............................ CCATAAACAAAAACAACCAGCAGACAGAAAACAAC 2804036 28 100.0 35 ............................ CAGAATCAGAACCGCCAACAGGTAGTGAATCAATA 2803973 28 100.0 36 ............................ TAAACATAATTAGGAGATTGCATTAAACCGTTTACA 2803909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 92 28 100.0 36 CTCATAACCCCGCATGGGGATTCGTAAC # Left flank : TCTGGCGTGCGGCATCGCCGCAGGCTTGCTGGAAAAGGGCTTCCGCGCCAAATTCTTCAGTGCCACCGCTCTCGTCCAGCAATTGCAGCAGGCCAAGGAAAAACTGTTGCTGGCAGAGATGTTGTTGCGCCTTGACCGTTACGAAGTGTTACTGCTGGATGACATCGGCTATGTCAAAAAGAGCAACCAAGAAACCCAAGTGCTGTTTGAACTGATTGCCCACCGCTATGAAACTGGCTCACTCATCATCACCTCCAATCATCCCTTCAGCGAATGGGGGCAGATATTTGAGGACAACATGATGACCGTCGCCGCCATTGATCGGCTCGTCCACCATGCCACCATTTTGGAATGCCAAGGGGAGAGTTACCGCCGACAATCTGCCATGAACAGGAGGCAAAACTAATCCACTTTCACACGACAACTAACCGGACAAGATAGTTGTCGCCGACCGGACAAAGTAATTGACGCGGCATAACCGTCCGCGCTACTGCTAAATC # Right flank : GCCTGATTTCAAGCGGATTTTGGGTGCTTTTGCTTGAAACAGACGACCTAAACATAGCATGAAAATGTGGTGGGAGTTCATCAAACATCAGGGATTTTTGCTTCAGTAGCGAGTGAAGTTGCTACAAAACTGAGAAGTCACGGCGGTGGTCATCTATCGGTGTCTGTTTTAGCTCGCCTTTGCCAGAGCTGCTTTTGGACAAATGATTCACCTCGATATTTTGGCGATTGGCAGCACTGATTTGTGTCACGCGGTCGCCGGGGATCATCAATTGGCTCAATTCACGCCGTAATTTGATTGCCTGCGCATCGGTAATATCGCCGGTGAACACCGAATATTGATCGTGATTCAAATAACGCCGCAACAACTTCTTGAATTTTTCGGTACGCTTGGCTTCGACATCGTAAGTCATCAACATGAACATTCACACCCTCCGCTTAAACGCTTCGTATTCTGCTACGCCCAATACCTCTCGTTCCAACCCCAGTGCCTCACGGTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 3 2815244-2812205 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072793.1 Thiothrix unzii strain A1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 2815243 28 100.0 35 ............................ ATGGCCTCGCGCTGGGGGTTCGGGGGCTTGGTGAT 2815180 28 100.0 36 ............................ ACCTCATCGCCGCTCGCTTGAACGCCGGGCAGAACT 2815116 28 100.0 36 ............................ CGACGTGCTGGACGCATGGGGCATTCGCGCGGAACT 2815052 28 100.0 36 ............................ TTCATTGTCGTCACCGTTGCCGGTCAAAAGCTGCGG 2814988 28 100.0 36 ............................ GGTACGTCAAGAGCAAGCCGCACCCGCACTCGCAGC 2814924 28 100.0 36 ............................ GGCTTCCGCCATCGCTGCCAGTAGTTTTTCTTGTTG 2814860 28 100.0 36 ............................ TGACGTTTAGCTTATTTCTGACATTCCTTCTGCACT 2814796 28 100.0 36 ............................ CGAAATGTCACCGAAAATCCGTAGGGGTGATCTGGT 2814732 28 100.0 36 ............................ AAAAGGCGAATTGGAAGTAGTTGGCGGCTTGGTCGG 2814668 28 100.0 37 ............................ CTGCACAGTTGCAGCGTTTCCGCGATCAATCCACCAA 2814603 28 100.0 36 ............................ TACTTTGAACATTAAAAATGCTCCTCTGCTGAATCA 2814539 28 100.0 36 ............................ CCATCGTGCTTTTTCCCACTCGTGCCAGTGCCGAAT 2814475 28 100.0 36 ............................ CAATGGCGAAAAGCTCCATCACTAACCCGGTACGCT 2814411 28 100.0 36 ............................ AAGATTCTCTTCGGTGACTTTGCCACCCTCAATCAC 2814347 28 100.0 36 ............................ TAAGGTGATGTCCCGCATCAGTTCCAAGATTGCGAT 2814283 28 100.0 36 ............................ CATATAGCTGTAGCTTCCCATAACGGATGCTGCGGT 2814219 28 100.0 36 ............................ CATTTTGGACAAGGAAGGCAATAAGCAATACAAAGT 2814155 28 100.0 36 ............................ GTTGCCGCACCGGGTTTGGTTTTAGTGGCCCGGCGT 2814091 28 100.0 36 ............................ TGCGGTTAATGGCGGTTGCTAAATAGCTTTCTTGCA 2814027 28 100.0 36 ............................ CCCTCATCGTGAAGGGGACAGCCCACAGGGGTGGTT 2813963 28 100.0 36 ............................ TCGGTGTCGGTTCCGCGCTTGCCCTTGGGCGTATTG 2813899 28 100.0 36 ............................ CCACCCTTCTTTCTGCCCGATTGATGCCGATATGGA 2813835 28 100.0 36 ............................ GAGTCCATCGTCGGTTGTACGATTGCTGATGCAACG 2813771 28 100.0 36 ............................ GGCCAGTAAACCGCGTAAAGGCGGCAAAGCTCCATC 2813707 28 100.0 36 ............................ GTTTTTGGGTTTGATCTGGGTATTAGTCCCGACACC 2813643 28 100.0 37 ............................ CCGGTGTCACCGAGAGTCGTTAATGTGCCATCCATAG 2813578 28 100.0 36 ............................ ATGTTAATCCGTCTATGTTGATAGTGGCAGGCCATG 2813514 28 100.0 36 ............................ TCTGCACTGCTTCCGGGTCAAGGTAGTTTTTATCTA 2813450 28 100.0 37 ............................ ATGATTACCCCGCCCTTTCCGGTTCCAATCAGATAAG 2813385 28 100.0 36 ............................ TCGATAGGCACGCCGAAGATGCGGTGTTGCTGTGCC 2813321 28 100.0 36 ............................ GCCTTGCAAGAGTGGCGACTCGCCGGGCGGTTTGAG 2813257 28 100.0 36 ............................ TGAAGGGTTGCAGGATTTGTCTTGATTGTTGCCCGT 2813193 28 100.0 37 ............................ CGGTCAACGATGGGGCATCGGCAACCATTTCTGGGGT 2813128 28 96.4 36 .........T.................. TCCATTTCGACAGATGCGATCACGATGCTGCCTACT 2813064 28 100.0 36 ............................ CTGGATGAAGACGAACAAACCCTAACTACTATTCAG 2813000 28 100.0 36 ............................ GTATGTGGACGCGAAACGGAGATGAGGGAGAGCATT 2812936 28 100.0 36 ............................ TCGGTTGGGCGCGTAGCAATCCCCTTGGTTATTAGT 2812872 28 100.0 36 ............................ TATATGTTCGGGTCGGCGGTTCTTTTCTGGTCTATC 2812808 28 100.0 36 ............................ GTATTCCGGGGCAATCAGGATACGCGGCTTTTGCCC 2812744 28 100.0 36 ............................ CATTACGGTGCAAAAGGCGCAAGGGGTCAAGCGTGG 2812680 28 100.0 36 ............................ AGTGGTGACGCGCATCCGTTGCGGGCAGGCATACAT 2812616 28 100.0 36 ............................ GCCGAAAAACACCGAGTCACGCGCTATCAGTTACAC 2812552 28 100.0 37 ............................ CTGGATAGATTCGGCGTACAGGTGCGTTTCTTCAAAC 2812487 28 100.0 36 ............................ CGCTCGGCGTAATTCATCAGCTTTTCTCCAGCAAGT 2812423 28 100.0 36 ............................ CCGGTCACGTGGGATGTTCAGCGCAATGGCGCACTC 2812359 28 100.0 36 ............................ CATCTTCATCCGGCGTGACGCATGAGCTTCATTTGC 2812295 28 100.0 35 ............................ TGGAGCTGATGACATCTTTCTATCCAAAGAGCAAC 2812232 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 48 28 99.9 36 CTCATAACCCCGCATGGGGATTCGTAAC # Left flank : TTCCCGTTCCTGACGGCGGGGATGGCGGCATGGCAAAGCCGCCGCCGTATGGCGATGTACTGGCTATTGGTCGCGCTGCTGCATTTTGTTGGGGTGTATTGGGTGAGCATCGCCACCAACATTCCCTTGCATCAAGACATCTTGGCGTGGAATCCCGCCGCGCCGCCTGCGGATTGGCAAACATTACGTGACACATGGACGACGGGTAACTGGGTGCGCACGATCGCTGAAGCGGTGTGTTTCATCGGGGCATTAACGCTGTTGGTGCTGCGTGAACAACTAGCGGCGCAACCGCGTTATGTGATGCGCCAGCAAAACTAGCGTAATGCTTGCTCCAGTGCATCTTCCGCAATCGGGAATGCCAGTGTCACCAACGGAAACCGCTCTGTCAGCCGCGCCAGTCGGTGCGCTTGTTCCTTGTCGTAAAATACCACCACCCGCGTATTTGGTAGCCGTTGCACTACTGCCAACGAATGCGGCAAAAACGCATCAGGAACACC # Right flank : TGGTATCACCACCACCGTCTATTCCGCGACAATTATCTTGTCCGGTCGGCGACAATTACGGTGGCCGGTTGAGTTGGTAGACTCAGGCGTATTTCTCTAAGGAGAAACCGATGCCTGGATTCCCGACCAATACTCAACAATACAGGCTCTATATGAAACTCCGAGAAGCAGGACTCACGCAAGTGAGTGCCGCCGTTAAGGCTGGCCTTTCCGAACGGACAGGCCGCCGTCTTGAACAACCCAGCCATGTCCCACCCGGCGGACAGCCAGCCCCACGAAGCTGGCGTACCCGTACTGACCCACTGGCGGGTGTTTGGGAAAGTGAGCTGGTTCCCTTACTGCAAGACAACCCTGAACTGTTGCCCAAGACCTTGTGGGAATACGTGTGCCAGCGTTACCCCGACCAGTATGACAGCAAGGTGGAACGCACCTTACAACGCCGCATCAAGGCGTGGAAGCTGCAACACGGCAAACCGCTGGAGGTGATGTTTTTGCAGCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //